Wall clock time and date at job start Mon Mar 30 2020 06:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.46900 * 120.36556 * 22.35625 * 3 2 1 5 5 C 1.40469 * 120.56623 * 0.02562 * 4 3 2 6 6 H 1.08000 * 119.99911 * 24.84240 * 5 4 3 7 7 C 1.40133 * 120.00003 * 204.84280 * 5 4 3 8 8 N 1.30746 * 119.99852 * 17.58918 * 7 5 4 9 9 Si 1.86805 * 120.00067 * 197.59170 * 7 5 4 10 10 H 1.48503 * 109.46834 * 89.99559 * 9 7 5 11 11 H 1.48494 * 109.47377 * 209.99784 * 9 7 5 12 12 H 1.48500 * 109.46794 * 330.00007 * 9 7 5 13 13 C 1.40260 * 118.86383 * 180.02562 * 4 3 2 14 14 C 1.38945 * 120.44971 * 359.96604 * 13 4 3 15 15 S 1.76229 * 129.76474 * 180.02562 * 14 13 4 16 16 C 1.75423 * 91.59656 * 179.97438 * 15 14 13 17 17 C 1.32392 * 110.90573 * 359.97438 * 16 15 14 18 18 C 1.40509 * 120.93436 * 0.03403 * 14 13 4 19 19 C 1.38034 * 120.36106 * 202.38503 * 3 2 1 20 20 C 1.50704 * 119.63020 * 359.97438 * 19 3 2 21 21 O 1.42901 * 109.47260 * 269.98155 * 20 19 3 22 22 H 0.96999 * 119.99290 * 180.02562 * 8 7 5 23 23 H 1.07999 * 119.77368 * 180.02562 * 13 4 3 24 24 H 1.07998 * 124.54671 * 179.73637 * 16 15 14 25 25 H 1.08009 * 122.04829 * 179.97438 * 17 16 15 26 26 H 1.08998 * 109.46830 * 29.98090 * 20 19 3 27 27 H 1.08997 * 109.47023 * 149.98207 * 20 19 3 28 28 H 0.96700 * 113.99625 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3111 -1.1712 -0.4821 5 6 2.6291 -2.3068 -0.9496 6 1 1.6250 -2.2127 -1.3360 7 6 3.2517 -3.5618 -0.9146 8 7 4.2982 -3.7514 -0.1542 9 14 2.5863 -4.9638 -1.9543 10 1 3.2461 -4.9499 -3.2846 11 1 2.8632 -6.2565 -1.2779 12 1 1.1205 -4.7995 -2.1271 13 6 4.7132 -1.1368 -0.4676 14 6 5.3852 -0.0120 -0.0053 15 16 7.1161 0.2947 0.1205 16 6 6.8343 1.8964 0.7781 17 6 5.5377 2.1441 0.8793 18 6 4.6797 1.1117 0.4570 19 6 3.2652 1.1022 0.4536 20 6 2.5109 2.3088 0.9500 21 8 2.2732 3.2032 -0.1388 22 1 4.7293 -4.6200 -0.1303 23 1 5.2743 -1.9901 -0.8191 24 1 7.6139 2.5862 1.0657 25 1 5.1614 3.0805 1.2642 26 1 1.5584 1.9923 1.3749 27 1 3.0993 2.8157 1.7148 28 1 1.7904 4.0038 0.1081 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396223028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:05 Heat of formation + Delta-G solvation = 7.036940 kcal Electronic energy + Delta-G solvation = -16163.391543 eV Core-core repulsion = 13463.158699 eV Total energy + Delta-G solvation = -2700.232845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.79294 -36.27131 -35.82264 -34.90027 -33.06422 -30.78965 -29.23769 -26.17504 -25.02866 -22.89527 -21.25064 -20.18378 -17.52420 -17.11799 -16.89733 -16.50936 -15.52692 -15.24509 -14.07658 -13.59461 -13.33913 -13.21113 -13.06721 -12.76323 -12.28179 -12.19228 -11.88191 -11.64636 -11.55620 -11.44241 -11.30706 -10.91345 -10.41500 -10.13127 -10.03875 -9.79640 -9.61889 -9.38900 -8.64599 -7.57814 -7.26516 -6.90630 -4.77519 1.69572 1.88375 2.54066 2.78184 2.87360 2.91546 2.93859 3.31677 3.61314 3.68889 3.97654 4.25079 4.78203 5.06862 5.21862 5.48488 5.50711 5.71228 5.77113 5.97354 6.40522 6.51681 6.63744 6.70433 6.79172 6.97938 7.29417 7.42029 7.49339 7.60563 7.89155 8.00804 8.25156 8.33953 8.57284 9.62169 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.009063 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.216148 B = 3088.660849 C = 4565.199213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.299 3.701 3 C -0.129 4.129 4 C 0.155 3.845 5 C -0.413 4.413 6 H 0.091 0.909 7 C 0.072 3.928 8 N -0.752 5.752 9 Si 0.919 3.081 10 H -0.260 1.260 11 H -0.271 1.271 12 H -0.256 1.256 13 C -0.149 4.149 14 C -0.056 4.056 15 S 0.005 5.995 16 C -0.257 4.257 17 C -0.069 4.069 18 C -0.196 4.196 19 C 0.035 3.965 20 C 0.113 3.887 21 O -0.559 6.559 22 H 0.294 0.706 23 H 0.132 0.868 24 H 0.147 0.853 25 H 0.121 0.879 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.326 4.524 1.346 5.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.012 4.012 3 C -0.134 4.134 4 C 0.146 3.854 5 C -0.441 4.441 6 H 0.109 0.891 7 C -0.152 4.152 8 N -0.373 5.373 9 Si 0.742 3.258 10 H -0.184 1.184 11 H -0.196 1.196 12 H -0.180 1.180 13 C -0.176 4.176 14 C -0.172 4.172 15 S 0.265 5.735 16 C -0.389 4.389 17 C -0.099 4.099 18 C -0.202 4.202 19 C 0.030 3.970 20 C 0.035 3.965 21 O -0.364 6.364 22 H 0.105 0.895 23 H 0.150 0.850 24 H 0.165 0.835 25 H 0.138 0.862 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 3.410 3.160 0.834 4.724 hybrid contribution -1.175 0.587 0.367 1.363 sum 2.236 3.748 1.201 4.526 Atomic orbital electron populations 1.81035 1.12414 1.10596 1.12522 1.25540 0.92539 0.91282 0.91862 1.16713 0.83520 0.98726 1.14470 1.18113 0.90741 0.89378 0.87137 1.19744 1.01626 0.91035 1.31683 0.89078 1.26156 0.94081 1.01003 0.93958 1.69755 1.15544 1.25976 1.26074 0.86081 0.80954 0.78500 0.80282 1.18417 1.19567 1.17981 1.20522 0.93119 0.96443 1.07512 1.22384 0.94382 0.97847 1.02549 1.83792 1.05601 1.13139 1.71013 1.24503 0.99193 1.00785 1.14462 1.19734 0.92321 0.98268 0.99547 1.17303 0.91931 0.95440 1.15513 1.18953 0.91122 0.91579 0.95327 1.21064 0.97547 0.89283 0.88590 1.86641 1.79561 1.34420 1.35771 0.89452 0.85030 0.83548 0.86150 0.93486 0.92791 0.78302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.28 18.54 41.84 0.78 -10.51 15 2 C 0.30 6.84 12.66 -22.47 -0.28 6.56 15 3 C -0.13 -2.97 5.91 -104.54 -0.62 -3.58 15 4 C 0.15 3.75 5.72 -104.79 -0.60 3.15 15 5 C -0.41 -9.85 8.55 -38.03 -0.33 -10.17 15 6 H 0.09 2.17 7.38 -52.49 -0.39 1.78 15 7 C 0.07 1.60 5.14 -17.30 -0.09 1.51 15 8 N -0.75 -16.94 10.97 55.56 0.61 -16.33 15 9 Si 0.92 16.70 29.60 -169.99 -5.03 11.67 15 10 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 11 H -0.27 -4.77 7.11 56.52 0.40 -4.37 15 12 H -0.26 -4.75 7.11 56.52 0.40 -4.35 15 13 C -0.15 -3.54 8.71 -38.56 -0.34 -3.87 15 14 C -0.06 -1.25 6.44 -38.46 -0.25 -1.50 15 15 S 0.00 0.10 23.29 -107.50 -2.50 -2.41 15 16 C -0.26 -4.46 11.08 28.81 0.32 -4.14 15 17 C -0.07 -1.27 9.52 -40.57 -0.39 -1.65 15 18 C -0.20 -4.18 5.83 -106.88 -0.62 -4.80 15 19 C 0.04 0.75 5.60 -103.47 -0.58 0.17 15 20 C 0.11 1.94 6.51 36.01 0.23 2.18 15 21 O -0.56 -9.34 13.64 -35.23 -0.48 -9.82 15 22 H 0.29 5.91 8.29 -40.82 -0.34 5.57 15 23 H 0.13 3.16 6.16 -52.49 -0.32 2.84 15 24 H 0.15 2.08 8.06 -52.49 -0.42 1.66 15 25 H 0.12 1.89 7.27 -52.48 -0.38 1.51 15 26 H 0.05 0.80 7.03 -51.93 -0.37 0.44 15 27 H 0.05 0.79 7.05 -51.93 -0.37 0.43 15 28 H 0.37 4.04 9.12 45.56 0.42 4.45 15 LS Contribution 269.39 15.07 4.06 4.06 Total: -1.00 -26.70 269.39 -7.07 -33.77 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -0.96 Total: 5.73 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -3.54 Total: -16.16 kcal Atomic # 7 Polarization: -28.22 SS G_CDS: 1.39 Total: -26.84 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.48 Total: -9.82 kcal Atomic # 14 Polarization: 16.70 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: 0.10 SS G_CDS: -2.50 Total: -2.41 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -26.70 -7.07 -33.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.807 kcal (2) G-P(sol) polarization free energy of solvation -26.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds