Wall clock time and date at job start Mon Mar 30 2020 06:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.46900 * 120.36556 * 22.35625 * 3 2 1 5 5 C 1.40469 * 120.56623 * 0.02562 * 4 3 2 6 6 H 1.08000 * 119.99911 * 24.84240 * 5 4 3 7 7 C 1.40133 * 120.00003 * 204.84280 * 5 4 3 8 8 N 1.30746 * 119.99852 * 17.58918 * 7 5 4 9 9 Si 1.86805 * 120.00067 * 197.59170 * 7 5 4 10 10 H 1.48503 * 109.46834 * 89.99559 * 9 7 5 11 11 H 1.48494 * 109.47377 * 209.99784 * 9 7 5 12 12 H 1.48500 * 109.46794 * 330.00007 * 9 7 5 13 13 C 1.40260 * 118.86383 * 180.02562 * 4 3 2 14 14 C 1.38945 * 120.44971 * 359.96604 * 13 4 3 15 15 S 1.76229 * 129.76474 * 180.02562 * 14 13 4 16 16 C 1.75423 * 91.59656 * 179.97438 * 15 14 13 17 17 C 1.32392 * 110.90573 * 359.97438 * 16 15 14 18 18 C 1.40509 * 120.93436 * 0.03403 * 14 13 4 19 19 C 1.38034 * 120.36106 * 202.38503 * 3 2 1 20 20 C 1.50704 * 119.63020 * 359.97438 * 19 3 2 21 21 O 1.42901 * 109.47260 * 269.98155 * 20 19 3 22 22 H 0.96999 * 119.99290 * 180.02562 * 8 7 5 23 23 H 1.07999 * 119.77368 * 180.02562 * 13 4 3 24 24 H 1.07998 * 124.54671 * 179.73637 * 16 15 14 25 25 H 1.08009 * 122.04829 * 179.97438 * 17 16 15 26 26 H 1.08998 * 109.46830 * 29.98090 * 20 19 3 27 27 H 1.08997 * 109.47023 * 149.98207 * 20 19 3 28 28 H 0.96700 * 113.99625 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3111 -1.1712 -0.4821 5 6 2.6291 -2.3068 -0.9496 6 1 1.6250 -2.2127 -1.3360 7 6 3.2517 -3.5618 -0.9146 8 7 4.2982 -3.7514 -0.1542 9 14 2.5863 -4.9638 -1.9543 10 1 3.2461 -4.9499 -3.2846 11 1 2.8632 -6.2565 -1.2779 12 1 1.1205 -4.7995 -2.1271 13 6 4.7132 -1.1368 -0.4676 14 6 5.3852 -0.0120 -0.0053 15 16 7.1161 0.2947 0.1205 16 6 6.8343 1.8964 0.7781 17 6 5.5377 2.1441 0.8793 18 6 4.6797 1.1117 0.4570 19 6 3.2652 1.1022 0.4536 20 6 2.5109 2.3088 0.9500 21 8 2.2732 3.2032 -0.1388 22 1 4.7293 -4.6200 -0.1303 23 1 5.2743 -1.9901 -0.8191 24 1 7.6139 2.5862 1.0657 25 1 5.1614 3.0805 1.2642 26 1 1.5584 1.9923 1.3749 27 1 3.0993 2.8157 1.7148 28 1 1.7904 4.0038 0.1081 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396223028.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:04 Heat of formation + Delta-G solvation = -9.074792 kcal Electronic energy + Delta-G solvation = -16164.090201 eV Core-core repulsion = 13463.158699 eV Total energy + Delta-G solvation = -2700.931502 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.39603 -37.65618 -37.51255 -36.56563 -34.67904 -32.39783 -30.88060 -27.80419 -26.54740 -24.55141 -22.80567 -21.79042 -19.19545 -18.56876 -18.39506 -18.08131 -17.05948 -16.81064 -15.60377 -14.96363 -14.88817 -14.85192 -14.73306 -14.34441 -13.94609 -13.80639 -13.56363 -13.23236 -13.12488 -13.03710 -12.80294 -12.47075 -11.95832 -11.67327 -11.64805 -11.34423 -11.01821 -10.94515 -10.27581 -9.24690 -8.90454 -8.49448 -6.52182 0.12824 0.16976 0.96169 1.29894 1.36593 1.42512 1.48930 1.76748 1.88156 2.11050 2.25663 2.57464 3.29906 3.36688 3.64366 4.08240 4.15269 4.34517 4.45878 4.53223 4.81237 4.91043 4.97690 5.10721 5.24419 5.34731 5.63019 5.75077 5.87930 5.92308 6.25064 6.53042 6.61058 6.77997 6.91203 8.01724 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017320 B = 0.009063 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.216148 B = 3088.660849 C = 4565.199213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.305 3.695 3 C -0.154 4.154 4 C 0.133 3.867 5 C -0.448 4.448 6 H 0.078 0.922 7 C 0.042 3.958 8 N -0.780 5.780 9 Si 0.983 3.017 10 H -0.253 1.253 11 H -0.257 1.257 12 H -0.264 1.264 13 C -0.170 4.170 14 C -0.082 4.082 15 S 0.017 5.983 16 C -0.233 4.233 17 C -0.084 4.084 18 C -0.200 4.200 19 C 0.030 3.970 20 C 0.119 3.881 21 O -0.577 6.577 22 H 0.303 0.697 23 H 0.118 0.882 24 H 0.189 0.811 25 H 0.155 0.845 26 H 0.045 0.955 27 H 0.087 0.913 28 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.495 6.128 1.936 7.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.005 4.005 3 C -0.160 4.160 4 C 0.125 3.875 5 C -0.476 4.476 6 H 0.097 0.903 7 C -0.180 4.180 8 N -0.402 5.402 9 Si 0.803 3.197 10 H -0.177 1.177 11 H -0.181 1.181 12 H -0.188 1.188 13 C -0.197 4.197 14 C -0.197 4.197 15 S 0.277 5.723 16 C -0.366 4.366 17 C -0.113 4.113 18 C -0.206 4.206 19 C 0.025 3.975 20 C 0.042 3.958 21 O -0.385 6.385 22 H 0.115 0.885 23 H 0.136 0.864 24 H 0.206 0.794 25 H 0.173 0.827 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.580 4.790 1.435 6.782 hybrid contribution -1.373 0.277 0.246 1.422 sum 3.208 5.067 1.681 6.228 Atomic orbital electron populations 1.81006 1.12564 1.11126 1.13258 1.25602 0.92574 0.90870 0.91459 1.16913 0.83565 0.99549 1.15935 1.18389 0.91386 0.90135 0.87623 1.19818 1.01602 0.92287 1.33874 0.90345 1.26842 0.94158 1.02488 0.94473 1.69765 1.16466 1.27065 1.26901 0.85161 0.79616 0.76028 0.78944 1.17727 1.18117 1.18844 1.20405 0.93086 0.96951 1.09243 1.22766 0.96703 0.97909 1.02332 1.83779 1.03059 1.14691 1.70748 1.25049 1.00004 0.99799 1.11722 1.19966 0.92156 0.98901 1.00262 1.17776 0.92394 0.95897 1.14552 1.19412 0.91665 0.92482 0.93926 1.21000 0.97481 0.88368 0.88999 1.86565 1.80237 1.35720 1.36023 0.88524 0.86383 0.79425 0.82718 0.93716 0.89473 0.75257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.54 18.54 19.00 0.35 -23.19 15 2 C 0.31 14.30 12.66 88.33 1.12 15.42 15 3 C -0.15 -7.26 5.91 -19.81 -0.12 -7.37 15 4 C 0.13 6.72 5.72 -19.97 -0.11 6.60 15 5 C -0.45 -22.46 8.55 23.27 0.20 -22.26 15 6 H 0.08 3.97 7.38 -2.91 -0.02 3.95 15 7 C 0.04 1.92 5.14 85.31 0.44 2.36 15 8 N -0.78 -36.30 10.97 21.86 0.24 -36.06 15 9 Si 0.98 34.94 29.60 68.60 2.03 36.97 15 10 H -0.25 -8.65 7.11 99.48 0.71 -7.94 15 11 H -0.26 -8.48 7.11 99.48 0.71 -7.78 15 12 H -0.26 -9.63 7.11 99.48 0.71 -8.93 15 13 C -0.17 -8.36 8.71 22.93 0.20 -8.16 15 14 C -0.08 -3.62 6.44 22.99 0.15 -3.48 15 15 S 0.02 0.63 23.29 -56.49 -1.32 -0.68 15 16 C -0.23 -7.09 11.08 66.72 0.74 -6.36 15 17 C -0.08 -2.75 9.52 21.77 0.21 -2.55 15 18 C -0.20 -8.21 5.83 -21.33 -0.12 -8.34 15 19 C 0.03 1.26 5.60 -19.12 -0.11 1.15 15 20 C 0.12 3.84 6.51 71.24 0.46 4.30 15 21 O -0.58 -17.82 13.64 -148.98 -2.03 -19.85 15 22 H 0.30 12.46 8.29 -92.71 -0.77 11.69 15 23 H 0.12 5.97 6.16 -2.91 -0.02 5.95 15 24 H 0.19 4.18 8.06 -2.91 -0.02 4.16 15 25 H 0.16 4.02 7.27 -2.91 -0.02 3.99 15 26 H 0.04 1.46 7.03 -2.39 -0.02 1.44 15 27 H 0.09 2.22 7.05 -2.39 -0.02 2.20 15 28 H 0.40 7.42 9.12 -74.06 -0.68 6.74 15 Total: -1.00 -58.88 269.39 2.88 -56.00 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 0.56 Total: 15.49 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 3.05 Total: -28.67 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.59 Total: -59.25 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: -2.03 Total: -19.85 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -1.32 Total: -0.68 kcal Total: -58.88 2.88 -56.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223028.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.924 kcal (2) G-P(sol) polarization free energy of solvation -58.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds