Wall clock time and date at job start Mon Mar 30 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35706 * 117.00117 * 2 1 4 4 C 1.38357 * 120.10592 * 5.32943 * 3 2 1 5 5 C 1.37724 * 121.10445 * 180.02562 * 4 3 2 6 6 C 1.40073 * 121.58922 * 359.96248 * 5 4 3 7 7 S 1.75860 * 130.30035 * 179.97438 * 6 5 4 8 8 C 1.70040 * 93.03509 * 180.02562 * 7 6 5 9 9 C 1.35413 * 111.93266 * 359.97438 * 8 7 6 10 10 C 1.43196 * 123.12994 * 180.02562 * 9 8 7 11 11 N 6.08643 * 167.64565 * 340.18784 * 2 1 3 12 12 C 1.39143 * 119.82236 * 0.02562 * 6 5 4 13 13 C 1.41002 * 120.11002 * 185.06257 * 3 2 1 14 14 C 1.40547 * 120.47314 * 359.97438 * 13 3 2 15 15 H 1.07996 * 119.99883 * 135.79359 * 14 13 3 16 16 C 1.39946 * 119.99585 * 315.78895 * 14 13 3 17 17 N 1.30906 * 119.99430 * 159.71057 * 16 14 13 18 18 Si 1.86790 * 120.00360 * 339.70683 * 16 14 13 19 19 H 1.48501 * 109.47149 * 94.34117 * 18 16 14 20 20 H 1.48509 * 109.47290 * 214.33782 * 18 16 14 21 21 H 1.48498 * 109.47361 * 334.33731 * 18 16 14 22 22 H 1.09000 * 109.47040 * 295.45429 * 1 2 3 23 23 H 1.08998 * 109.47265 * 55.45509 * 1 2 3 24 24 H 1.09008 * 109.46885 * 175.45618 * 1 2 3 25 25 H 1.08001 * 119.44339 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.20360 * 179.97438 * 5 4 3 27 27 H 1.07998 * 124.03474 * 180.02562 * 8 7 6 28 28 H 0.97001 * 119.99840 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2983 2.3686 0.1112 5 6 1.9021 3.6064 0.1129 6 6 3.2917 3.7450 0.0035 7 16 4.2922 5.1911 -0.0196 8 6 5.7327 4.3015 -0.1765 9 6 5.5021 2.9676 -0.2123 10 6 6.5463 1.9959 -0.3390 11 7 7.3744 1.2252 -0.4414 12 6 4.0932 2.6134 -0.1108 13 6 3.4488 1.2878 -0.1076 14 6 4.2219 0.1190 -0.2151 15 1 5.0251 0.0673 -0.9352 16 6 3.9510 -0.9776 0.6111 17 7 4.3686 -2.1711 0.2724 18 14 2.9938 -0.7381 2.1971 19 1 1.5532 -1.0012 1.9503 20 1 3.4995 -1.6803 3.2276 21 1 3.1675 0.6573 2.6743 22 1 -0.3633 0.4417 0.9279 23 1 -0.3634 0.5827 -0.8464 24 1 -0.3633 -1.0245 -0.0814 25 1 0.2239 2.3017 0.1981 26 1 1.2895 4.4914 0.2009 27 1 6.7145 4.7470 -0.2393 28 1 4.1805 -2.9313 0.8448 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396223181.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:50 Heat of formation + Delta-G solvation = 37.184467 kcal Electronic energy + Delta-G solvation = -16603.263594 eV Core-core repulsion = 13904.338045 eV Total energy + Delta-G solvation = -2698.925550 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.14362 -37.37013 -35.57469 -33.91475 -33.38192 -30.62835 -28.27888 -26.74686 -25.18409 -23.87160 -21.32975 -20.65578 -18.28913 -17.28219 -16.42223 -16.09036 -15.46593 -14.96105 -14.78686 -14.27609 -13.52421 -13.24361 -12.96768 -12.74808 -12.31335 -12.25281 -12.08727 -11.67925 -11.55895 -11.37642 -11.16873 -11.07062 -10.67416 -10.33306 -10.13441 -9.75682 -9.61637 -9.16099 -8.25570 -7.56973 -7.07832 -6.84650 -4.51018 1.25304 2.18818 2.29987 2.51130 2.59866 3.09296 3.17336 3.27660 3.52696 3.98413 4.10328 4.30583 4.38397 4.91608 5.01473 5.38804 5.60953 5.70046 5.72274 5.92215 5.98180 6.12278 6.37715 6.43932 6.66259 6.89162 7.13012 7.14221 7.36227 7.52644 8.04326 8.13226 8.31480 8.48588 8.66015 9.92320 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.011036 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.339047 B = 2536.448695 C = 3614.056280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.299 6.299 3 C 0.001 3.999 4 C -0.128 4.128 5 C -0.187 4.187 6 C -0.110 4.110 7 S 0.117 5.883 8 C -0.239 4.239 9 C 0.016 3.984 10 C 0.286 3.714 11 N -0.430 5.430 12 C -0.127 4.127 13 C 0.110 3.890 14 C -0.416 4.416 15 H 0.099 0.901 16 C 0.099 3.901 17 N -0.782 5.782 18 Si 0.914 3.086 19 H -0.246 1.246 20 H -0.291 1.291 21 H -0.253 1.253 22 H 0.041 0.959 23 H 0.046 0.954 24 H 0.084 0.916 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.161 0.839 28 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 8.440 1.609 10.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.214 6.214 3 C -0.046 4.046 4 C -0.150 4.150 5 C -0.213 4.213 6 C -0.225 4.225 7 S 0.383 5.617 8 C -0.378 4.378 9 C -0.002 4.002 10 C -0.030 4.030 11 N -0.107 5.107 12 C -0.134 4.134 13 C 0.104 3.896 14 C -0.443 4.443 15 H 0.117 0.883 16 C -0.124 4.124 17 N -0.404 5.404 18 Si 0.739 3.261 19 H -0.171 1.171 20 H -0.218 1.218 21 H -0.177 1.177 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.102 0.898 25 H 0.128 0.872 26 H 0.122 0.878 27 H 0.179 0.821 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.878 8.330 1.531 9.774 hybrid contribution -0.569 -1.195 0.536 1.428 sum -5.447 7.135 2.067 9.211 Atomic orbital electron populations 1.22772 0.81307 1.02332 1.00045 1.86153 1.18609 1.26834 1.89816 1.18716 0.91565 0.83670 1.10627 1.20524 0.98256 0.92108 1.04104 1.19300 0.90519 0.96127 1.15316 1.22153 0.97525 0.94704 1.08100 1.82324 0.94287 1.08184 1.76878 1.24543 1.03921 0.96172 1.13162 1.15825 0.88917 0.88832 1.06610 1.25022 0.92060 0.92457 0.93487 1.81107 1.12299 1.08269 1.08992 1.19436 0.88637 0.92803 1.12506 1.17630 0.88365 0.90702 0.92902 1.19286 1.14267 0.94145 1.16571 0.88341 1.26120 0.92708 0.93417 1.00106 1.69735 1.34807 0.99930 1.35916 0.86208 0.81130 0.79966 0.78763 1.17087 1.21794 1.17678 0.94093 0.93518 0.89751 0.87181 0.87780 0.82105 0.90090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.41 101.05 0.95 1.45 15 2 O -0.30 -6.53 5.99 -18.82 -0.11 -6.64 15 3 C 0.00 0.01 5.19 -38.49 -0.20 -0.19 15 4 C -0.13 -2.50 8.97 -39.73 -0.36 -2.86 15 5 C -0.19 -3.54 10.01 -39.08 -0.39 -3.93 15 6 C -0.11 -2.18 6.46 -38.56 -0.25 -2.43 15 7 S 0.12 1.85 22.98 -107.50 -2.47 -0.62 15 8 C -0.24 -4.00 10.65 29.72 0.32 -3.68 15 9 C 0.02 0.34 5.85 -106.03 -0.62 -0.28 15 10 C 0.29 6.35 13.30 -22.48 -0.30 6.05 15 11 N -0.43 -10.12 18.46 41.84 0.77 -9.34 15 12 C -0.13 -2.85 6.19 -102.89 -0.64 -3.49 15 13 C 0.11 2.70 4.83 -104.25 -0.50 2.20 15 14 C -0.42 -11.11 8.16 -38.07 -0.31 -11.42 15 15 H 0.10 2.84 6.93 -52.49 -0.36 2.47 15 16 C 0.10 2.60 4.88 -17.31 -0.08 2.51 15 17 N -0.78 -20.83 13.93 55.55 0.77 -20.06 15 18 Si 0.91 20.91 24.81 -169.99 -4.22 16.70 15 19 H -0.25 -5.28 5.87 56.52 0.33 -4.95 15 20 H -0.29 -6.45 7.11 56.52 0.40 -6.05 15 21 H -0.25 -5.98 7.11 56.52 0.40 -5.57 15 22 H 0.04 0.60 7.69 -51.93 -0.40 0.20 15 23 H 0.05 0.67 7.63 -51.93 -0.40 0.27 15 24 H 0.08 1.19 8.14 -51.92 -0.42 0.77 15 25 H 0.11 1.79 6.26 -52.49 -0.33 1.46 15 26 H 0.10 1.67 8.06 -52.49 -0.42 1.25 15 27 H 0.16 2.19 8.06 -52.49 -0.42 1.77 15 28 H 0.29 6.95 8.30 -40.82 -0.34 6.61 15 LS Contribution 261.22 15.07 3.94 3.94 Total: -1.00 -28.20 261.22 -5.66 -33.86 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -1.96 Total: -1.76 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -2.38 Total: -16.06 kcal Atomic # 7 Polarization: -30.95 SS G_CDS: 1.55 Total: -29.40 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.11 Total: -6.64 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.22 Total: 16.70 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.47 Total: -0.62 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -28.20 -5.66 -33.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223181.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.042 kcal (2) G-P(sol) polarization free energy of solvation -28.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds