Wall clock time and date at job start Mon Mar 30 2020 06:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35706 * 117.00117 * 2 1 4 4 C 1.38357 * 120.10592 * 5.32943 * 3 2 1 5 5 C 1.37724 * 121.10445 * 180.02562 * 4 3 2 6 6 C 1.40073 * 121.58922 * 359.96248 * 5 4 3 7 7 S 1.75860 * 130.30035 * 179.97438 * 6 5 4 8 8 C 1.70040 * 93.03509 * 180.02562 * 7 6 5 9 9 C 1.35413 * 111.93266 * 359.97438 * 8 7 6 10 10 C 1.43196 * 123.12994 * 180.02562 * 9 8 7 11 11 N 6.08643 * 167.64565 * 340.18784 * 2 1 3 12 12 C 1.39143 * 119.82236 * 0.02562 * 6 5 4 13 13 C 1.41002 * 120.11002 * 185.06257 * 3 2 1 14 14 C 1.40547 * 120.47314 * 359.97438 * 13 3 2 15 15 H 1.07996 * 119.99883 * 135.79359 * 14 13 3 16 16 C 1.39946 * 119.99585 * 315.78895 * 14 13 3 17 17 N 1.30906 * 119.99430 * 159.71057 * 16 14 13 18 18 Si 1.86790 * 120.00360 * 339.70683 * 16 14 13 19 19 H 1.48501 * 109.47149 * 94.34117 * 18 16 14 20 20 H 1.48509 * 109.47290 * 214.33782 * 18 16 14 21 21 H 1.48498 * 109.47361 * 334.33731 * 18 16 14 22 22 H 1.09000 * 109.47040 * 295.45429 * 1 2 3 23 23 H 1.08998 * 109.47265 * 55.45509 * 1 2 3 24 24 H 1.09008 * 109.46885 * 175.45618 * 1 2 3 25 25 H 1.08001 * 119.44339 * 0.02562 * 4 3 2 26 26 H 1.07998 * 119.20360 * 179.97438 * 5 4 3 27 27 H 1.07998 * 124.03474 * 180.02562 * 8 7 6 28 28 H 0.97001 * 119.99840 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 1.2983 2.3686 0.1112 5 6 1.9021 3.6064 0.1129 6 6 3.2917 3.7450 0.0035 7 16 4.2922 5.1911 -0.0196 8 6 5.7327 4.3015 -0.1765 9 6 5.5021 2.9676 -0.2123 10 6 6.5463 1.9959 -0.3390 11 7 7.3744 1.2252 -0.4414 12 6 4.0932 2.6134 -0.1108 13 6 3.4488 1.2878 -0.1076 14 6 4.2219 0.1190 -0.2151 15 1 5.0251 0.0673 -0.9352 16 6 3.9510 -0.9776 0.6111 17 7 4.3686 -2.1711 0.2724 18 14 2.9938 -0.7381 2.1971 19 1 1.5532 -1.0012 1.9503 20 1 3.4995 -1.6803 3.2276 21 1 3.1675 0.6573 2.6743 22 1 -0.3633 0.4417 0.9279 23 1 -0.3634 0.5827 -0.8464 24 1 -0.3633 -1.0245 -0.0814 25 1 0.2239 2.3017 0.1981 26 1 1.2895 4.4914 0.2009 27 1 6.7145 4.7470 -0.2393 28 1 4.1805 -2.9313 0.8448 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396223181.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:50 Heat of formation + Delta-G solvation = 19.415354 kcal Electronic energy + Delta-G solvation = -16604.034121 eV Core-core repulsion = 13904.338045 eV Total energy + Delta-G solvation = -2699.696076 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72198 -38.94723 -37.26389 -35.61314 -34.99158 -32.29084 -29.84303 -28.09298 -26.86709 -25.41959 -22.96685 -22.25162 -19.98834 -18.86366 -17.93990 -17.64915 -17.04797 -16.52756 -16.31923 -15.88155 -15.21135 -14.84008 -14.66632 -14.26399 -13.98969 -13.82244 -13.71280 -13.28186 -13.21136 -12.95036 -12.68112 -12.55672 -12.25915 -11.97314 -11.75348 -11.30393 -11.19239 -10.89712 -9.82226 -9.10440 -8.84452 -8.36765 -6.32981 -0.27676 0.65753 0.74778 0.86683 1.07735 1.28332 1.38090 1.46404 1.83198 2.20143 2.44310 2.64874 2.84954 3.28085 3.36868 3.96616 4.24073 4.39379 4.51437 4.53168 4.58597 4.78117 4.81338 4.86905 5.10630 5.27420 5.47997 5.52691 5.74552 5.89292 6.28361 6.42530 6.65239 6.75181 7.07475 8.23663 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.011036 C = 0.007746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.339047 B = 2536.448695 C = 3614.056280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.331 6.331 3 C -0.002 4.002 4 C -0.137 4.137 5 C -0.149 4.149 6 C -0.159 4.159 7 S 0.241 5.759 8 C -0.190 4.190 9 C -0.046 4.046 10 C 0.298 3.702 11 N -0.477 5.477 12 C -0.126 4.126 13 C 0.073 3.927 14 C -0.469 4.469 15 H 0.050 0.950 16 C 0.066 3.934 17 N -0.851 5.851 18 Si 0.958 3.042 19 H -0.224 1.224 20 H -0.290 1.290 21 H -0.266 1.266 22 H 0.060 0.940 23 H 0.066 0.934 24 H 0.099 0.901 25 H 0.149 0.851 26 H 0.149 0.851 27 H 0.202 0.798 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.655 13.824 2.357 16.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C -0.048 4.048 4 C -0.158 4.158 5 C -0.172 4.172 6 C -0.273 4.273 7 S 0.508 5.492 8 C -0.330 4.330 9 C -0.064 4.064 10 C -0.017 4.017 11 N -0.155 5.155 12 C -0.134 4.134 13 C 0.068 3.932 14 C -0.498 4.498 15 H 0.068 0.932 16 C -0.149 4.149 17 N -0.478 5.478 18 Si 0.781 3.219 19 H -0.148 1.148 20 H -0.218 1.218 21 H -0.191 1.191 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.117 0.883 25 H 0.167 0.833 26 H 0.167 0.833 27 H 0.219 0.781 28 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.484 13.750 2.277 15.819 hybrid contribution 0.107 -2.124 0.226 2.139 sum -7.377 11.626 2.504 13.994 Atomic orbital electron populations 1.23141 0.78556 1.04142 1.01822 1.86122 1.21574 1.27159 1.89788 1.18962 0.91178 0.85017 1.09670 1.20999 1.00196 0.91247 1.03355 1.20001 0.90578 0.97432 1.09233 1.22683 0.98614 0.96606 1.09422 1.82041 0.90501 1.03397 1.73274 1.25352 1.07264 0.94998 1.05401 1.15970 0.88017 0.90059 1.12395 1.25441 0.91801 0.92195 0.92226 1.81079 1.14185 1.08967 1.11245 1.19837 0.90045 0.93203 1.10265 1.17904 0.89667 0.91004 0.94635 1.18919 1.15429 0.96568 1.18868 0.93230 1.26659 0.93392 0.93022 1.01813 1.69804 1.39763 1.00609 1.37615 0.85582 0.81441 0.78671 0.76166 1.14792 1.21792 1.19066 0.92140 0.91561 0.88302 0.83329 0.83307 0.78136 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.54 9.41 113.37 1.07 1.60 15 2 O -0.33 -14.36 5.99 -90.27 -0.54 -14.90 15 3 C 0.00 -0.08 5.19 22.98 0.12 0.04 15 4 C -0.14 -4.74 8.97 22.18 0.20 -4.54 15 5 C -0.15 -4.72 10.01 22.59 0.23 -4.50 15 6 C -0.16 -5.54 6.46 22.93 0.15 -5.39 15 7 S 0.24 5.90 22.98 -56.49 -1.30 4.60 15 8 C -0.19 -5.44 10.65 67.17 0.72 -4.72 15 9 C -0.05 -1.82 5.85 -20.78 -0.12 -1.95 15 10 C 0.30 13.80 13.30 88.33 1.17 14.97 15 11 N -0.48 -24.00 18.46 19.00 0.35 -23.64 15 12 C -0.13 -5.54 6.19 -18.74 -0.12 -5.65 15 13 C 0.07 3.68 4.83 -19.63 -0.09 3.58 15 14 C -0.47 -27.20 8.16 23.25 0.19 -27.01 15 15 H 0.05 3.21 6.93 -2.91 -0.02 3.19 15 16 C 0.07 3.73 4.88 85.24 0.42 4.14 15 17 N -0.85 -50.16 13.93 21.83 0.30 -49.85 15 18 Si 0.96 45.05 24.81 68.60 1.70 46.75 15 19 H -0.22 -9.48 5.87 99.48 0.58 -8.90 15 20 H -0.29 -13.24 7.11 99.48 0.71 -12.53 15 21 H -0.27 -12.72 7.11 99.48 0.71 -12.01 15 22 H 0.06 1.54 7.69 -2.39 -0.02 1.52 15 23 H 0.07 1.68 7.63 -2.39 -0.02 1.66 15 24 H 0.10 2.60 8.14 -2.38 -0.02 2.58 15 25 H 0.15 3.96 6.26 -2.91 -0.02 3.94 15 26 H 0.15 3.47 8.06 -2.91 -0.02 3.45 15 27 H 0.20 4.17 8.06 -2.91 -0.02 4.15 15 28 H 0.29 15.43 8.30 -92.71 -0.77 14.66 15 Total: -1.00 -70.25 261.22 5.53 -64.72 By element: Atomic # 1 Polarization: 0.65 SS G_CDS: 1.09 Total: 1.73 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 3.92 Total: -29.41 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: 0.66 Total: -73.50 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -0.54 Total: -14.90 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.70 Total: 46.75 kcal Atomic # 16 Polarization: 5.90 SS G_CDS: -1.30 Total: 4.60 kcal Total: -70.25 5.53 -64.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396223181.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.137 kcal (2) G-P(sol) polarization free energy of solvation -70.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds