Wall clock time and date at job start Mon Mar 30 2020 06:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 S 1.75174 * 124.63514 * 258.95266 * 3 2 1 5 5 C 1.75868 * 92.83336 * 180.02562 * 4 3 2 6 6 C 1.40057 * 129.59160 * 180.02562 * 5 4 3 7 7 C 1.37516 * 120.48498 * 179.97438 * 6 5 4 8 8 C 1.38692 * 120.12540 * 359.97438 * 7 6 5 9 9 C 1.37321 * 120.25976 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.77330 * 180.02562 * 9 8 7 11 11 O 1.42898 * 109.46831 * 0.02562 * 10 9 8 12 12 C 1.39285 * 110.80998 * 359.97438 * 5 4 3 13 13 C 1.38650 * 124.63685 * 78.95055 * 3 2 1 14 14 C 1.39661 * 123.34832 * 0.04799 * 13 3 2 15 15 H 1.07997 * 120.00218 * 136.01620 * 14 13 3 16 16 C 1.40439 * 119.99817 * 316.02124 * 14 13 3 17 17 N 1.30614 * 119.99820 * 155.37056 * 16 14 13 18 18 Si 1.86799 * 119.99996 * 335.36497 * 16 14 13 19 19 H 1.48504 * 109.46963 * 94.84472 * 18 16 14 20 20 H 1.48503 * 109.47024 * 214.84207 * 18 16 14 21 21 H 1.48497 * 109.47280 * 334.84594 * 18 16 14 22 22 H 1.07999 * 119.75958 * 359.97438 * 6 5 4 23 23 H 1.07996 * 119.93175 * 180.27447 * 7 6 5 24 24 H 1.08007 * 119.86804 * 180.02562 * 8 7 6 25 25 H 1.08995 * 109.47482 * 119.99910 * 10 9 8 26 26 H 1.08999 * 109.47402 * 240.00227 * 10 9 8 27 27 H 0.96705 * 114.00537 * 180.02562 * 11 10 9 28 28 H 0.97001 * 119.99501 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.5634 0.2773 1.4146 5 6 5.0582 0.1011 0.5048 6 6 6.3855 0.1872 0.9434 7 6 7.4249 0.0153 0.0596 8 6 7.1655 -0.2461 -1.2776 9 6 5.8709 -0.3354 -1.7268 10 6 5.6017 -0.6204 -3.1818 11 8 6.8422 -0.7560 -3.8781 12 6 4.7927 -0.1613 -0.8371 13 6 3.3561 -0.2176 -1.1196 14 6 2.8327 -0.4651 -2.3906 15 1 3.2544 0.0284 -3.2537 16 6 1.7579 -1.3555 -2.5462 17 7 0.9641 -1.2471 -3.5777 18 14 1.4638 -2.6952 -1.2780 19 1 0.4706 -2.2226 -0.2801 20 1 0.9458 -3.9117 -1.9541 21 1 2.7409 -3.0160 -0.5916 22 1 6.5943 0.3901 1.9834 23 1 8.4450 0.0792 0.4083 24 1 7.9850 -0.3808 -1.9681 25 1 5.0321 -1.5454 -3.2716 26 1 5.0303 0.2014 -3.6135 27 1 6.7452 -0.9406 -4.8224 28 1 0.2220 -1.8624 -3.6853 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396224059.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:57 Heat of formation + Delta-G solvation = 13.034660 kcal Electronic energy + Delta-G solvation = -16435.353116 eV Core-core repulsion = 13735.380352 eV Total energy + Delta-G solvation = -2699.972764 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17753 -36.36038 -35.98459 -34.47241 -33.02574 -31.09628 -29.19159 -26.89987 -25.28543 -22.90118 -21.58289 -20.00959 -18.19665 -17.14205 -16.57559 -16.01994 -15.44032 -14.72923 -14.53777 -14.12071 -13.80819 -13.48133 -13.23430 -13.07988 -12.42211 -12.28792 -12.02451 -11.67236 -11.49494 -11.28935 -10.96313 -10.64631 -10.35247 -10.28317 -10.07454 -9.85615 -9.58839 -9.31186 -8.57793 -7.68866 -7.36596 -6.99277 -4.89763 1.31751 1.77520 2.38010 2.70014 2.99040 3.01534 3.08326 3.21405 3.81540 4.12014 4.23980 4.34099 4.55810 4.81516 5.24929 5.34087 5.42183 5.74692 5.83959 5.94630 6.01758 6.05343 6.37122 6.43162 6.56111 6.86760 6.94861 6.98357 7.22773 7.40839 7.81042 7.93342 7.99109 8.26973 8.86795 9.60299 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018934 B = 0.011014 C = 0.007719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.441184 B = 2541.722276 C = 3626.432296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C 0.317 3.683 3 C -0.331 4.331 4 S 0.049 5.951 5 C -0.106 4.106 6 C -0.106 4.106 7 C -0.109 4.109 8 C -0.122 4.122 9 C -0.037 4.037 10 C 0.116 3.884 11 O -0.580 6.580 12 C -0.064 4.064 13 C 0.129 3.871 14 C -0.409 4.409 15 H 0.112 0.888 16 C 0.095 3.905 17 N -0.762 5.762 18 Si 0.876 3.124 19 H -0.238 1.238 20 H -0.279 1.279 21 H -0.243 1.243 22 H 0.118 0.882 23 H 0.121 0.879 24 H 0.130 0.870 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.378 0.622 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.554 -0.898 1.273 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C 0.008 3.992 3 C -0.450 4.450 4 S 0.310 5.690 5 C -0.222 4.222 6 C -0.130 4.130 7 C -0.129 4.129 8 C -0.143 4.143 9 C -0.038 4.038 10 C 0.040 3.960 11 O -0.385 6.385 12 C -0.073 4.073 13 C 0.117 3.883 14 C -0.438 4.438 15 H 0.129 0.871 16 C -0.131 4.131 17 N -0.382 5.382 18 Si 0.698 3.302 19 H -0.162 1.162 20 H -0.205 1.205 21 H -0.166 1.166 22 H 0.136 0.864 23 H 0.139 0.861 24 H 0.148 0.852 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.224 0.776 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.368 -0.534 3.183 8.969 hybrid contribution 0.162 -0.997 -1.590 1.884 sum 8.530 -1.531 1.594 8.811 Atomic orbital electron populations 1.81064 1.11848 1.16258 1.08554 1.24077 0.91050 0.91527 0.92549 1.18711 0.87757 1.40556 0.98019 1.83012 0.93707 1.81545 1.10783 1.22501 0.97406 1.05129 0.97132 1.20427 0.89863 1.03319 0.99368 1.20877 0.98079 1.00518 0.93429 1.20660 0.96207 1.01963 0.95448 1.19507 0.92118 0.98442 0.93779 1.21172 0.84443 1.01371 0.89027 1.86352 1.31717 1.95180 1.25294 1.19211 0.93418 1.02644 0.92038 1.17413 0.87581 0.90800 0.92544 1.19215 1.10708 1.20253 0.93661 0.87059 1.26249 0.92325 0.98698 0.95863 1.69590 1.09687 1.31853 1.27113 0.86826 0.82463 0.79214 0.81707 1.16154 1.20450 1.16559 0.86397 0.86111 0.85212 0.90883 0.91356 0.77554 0.89447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -12.93 17.40 41.84 0.73 -12.21 15 2 C 0.32 7.99 11.24 -22.47 -0.25 7.74 15 3 C -0.33 -7.79 5.23 -37.51 -0.20 -7.99 15 4 S 0.05 0.99 23.12 -107.50 -2.49 -1.49 15 5 C -0.11 -2.06 6.41 -38.51 -0.25 -2.31 15 6 C -0.11 -1.71 10.06 -39.16 -0.39 -2.10 15 7 C -0.11 -1.61 10.03 -39.68 -0.40 -2.01 15 8 C -0.12 -1.99 9.35 -39.75 -0.37 -2.36 15 9 C -0.04 -0.68 5.93 -103.96 -0.62 -1.30 15 10 C 0.12 1.95 5.75 36.01 0.21 2.16 15 11 O -0.58 -8.23 12.10 -35.23 -0.43 -8.65 15 12 C -0.06 -1.34 5.97 -105.18 -0.63 -1.97 15 13 C 0.13 2.98 4.70 -105.88 -0.50 2.48 15 14 C -0.41 -9.70 7.57 -38.22 -0.29 -9.99 15 15 H 0.11 2.59 5.96 -52.49 -0.31 2.28 15 16 C 0.10 2.32 4.76 -17.24 -0.08 2.24 15 17 N -0.76 -18.80 13.92 55.58 0.77 -18.03 15 18 Si 0.88 20.10 24.92 -169.99 -4.24 15.87 15 19 H -0.24 -5.81 5.28 56.52 0.30 -5.51 15 20 H -0.28 -6.08 7.11 56.52 0.40 -5.67 15 21 H -0.24 -5.56 7.11 56.52 0.40 -5.16 15 22 H 0.12 1.59 8.06 -52.49 -0.42 1.17 15 23 H 0.12 1.38 8.06 -52.49 -0.42 0.96 15 24 H 0.13 1.95 6.95 -52.48 -0.36 1.59 15 25 H 0.07 1.28 7.54 -51.93 -0.39 0.88 15 26 H 0.07 1.17 6.56 -51.93 -0.34 0.83 15 27 H 0.38 3.57 9.12 45.56 0.42 3.98 15 28 H 0.29 6.76 8.29 -40.82 -0.34 6.42 15 LS Contribution 258.51 15.07 3.90 3.90 Total: -1.00 -27.68 258.51 -6.59 -34.27 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -1.08 Total: 1.76 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -3.77 Total: -15.41 kcal Atomic # 7 Polarization: -31.74 SS G_CDS: 1.50 Total: -30.24 kcal Atomic # 8 Polarization: -8.23 SS G_CDS: -0.43 Total: -8.65 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -4.24 Total: 15.87 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.68 -6.59 -34.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224059.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.306 kcal (2) G-P(sol) polarization free energy of solvation -27.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds