Wall clock time and date at job start Mon Mar 30 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.35350 * 124.73506 * 175.66010 * 3 2 1 5 5 C 1.39788 * 115.42759 * 180.02562 * 4 3 2 6 6 C 1.40559 * 112.65266 * 359.97438 * 5 4 3 7 7 C 1.38930 * 120.07301 * 180.02562 * 6 5 4 8 8 C 1.40372 * 120.02537 * 359.97438 * 7 6 5 9 9 C 1.40863 * 120.18532 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00122 * 154.34595 * 9 8 7 11 11 C 1.40021 * 119.99853 * 334.34990 * 9 8 7 12 12 N 1.30796 * 120.00089 * 343.17346 * 11 9 8 13 13 Si 1.86806 * 119.99838 * 163.16909 * 11 9 8 14 14 H 1.48505 * 109.46662 * 90.00191 * 13 11 9 15 15 H 1.48497 * 109.47144 * 209.99911 * 13 11 9 16 16 H 1.48499 * 109.47124 * 330.00152 * 13 11 9 17 17 C 1.41348 * 119.63298 * 0.02562 * 8 7 6 18 18 C 1.35060 * 120.40165 * 0.02562 * 17 8 7 19 19 C 1.50700 * 119.55830 * 179.72911 * 18 17 8 20 20 O 1.42896 * 109.47179 * 359.97438 * 19 18 17 21 21 S 1.75459 * 124.73822 * 355.72360 * 3 2 1 22 22 H 1.07997 * 122.28586 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.98403 * 179.97438 * 7 6 5 24 24 H 0.96997 * 119.99901 * 179.97438 * 12 11 9 25 25 H 1.07994 * 119.79745 * 180.02562 * 17 8 7 26 26 H 1.09000 * 109.47119 * 119.99760 * 19 18 17 27 27 H 1.09008 * 109.46457 * 239.99356 * 19 18 17 28 28 H 0.96702 * 113.99947 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3387 1.1101 -0.0842 5 6 4.7182 0.8852 -0.0676 6 6 5.0433 -0.4783 0.0360 7 6 6.3740 -0.8765 0.0663 8 6 7.3960 0.0829 -0.0071 9 6 8.7464 -0.3170 0.0227 10 1 9.5039 0.3048 -0.4310 11 6 9.1064 -1.5208 0.6406 12 7 8.2760 -2.1077 1.4632 13 14 10.7728 -2.2888 0.2899 14 1 11.7685 -1.7778 1.2660 15 1 10.6729 -3.7653 0.4117 16 1 11.2017 -1.9335 -1.0867 17 6 7.0627 1.4526 -0.1112 18 6 5.7695 1.8411 -0.1397 19 6 5.4357 3.3069 -0.2449 20 8 6.6440 4.0679 -0.2982 21 16 3.5684 -1.4368 0.1075 22 1 2.9166 2.1013 -0.1598 23 1 6.6221 -1.9245 0.1463 24 1 8.5253 -2.9418 1.8910 25 1 7.8469 2.1929 -0.1683 26 1 4.8547 3.4832 -1.1501 27 1 4.8536 3.6102 0.6254 28 1 6.5049 5.0225 -0.3662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396224113.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:49 Heat of formation + Delta-G solvation = 4.900439 kcal Electronic energy + Delta-G solvation = -15770.319724 eV Core-core repulsion = 13069.994234 eV Total energy + Delta-G solvation = -2700.325490 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80066 -36.50741 -36.17792 -35.02499 -33.09969 -30.60047 -29.38943 -26.14742 -25.27576 -22.90052 -21.36330 -20.09042 -17.73820 -17.52044 -16.97083 -15.71771 -15.31187 -14.64167 -14.59838 -14.11708 -13.76866 -13.49559 -13.17323 -12.80084 -12.47303 -12.28106 -12.04587 -11.70994 -11.64779 -11.28765 -11.14628 -10.85533 -10.38688 -10.22107 -10.11016 -9.90087 -9.65322 -9.27293 -8.54212 -7.58437 -7.22648 -6.82863 -4.69972 1.18429 2.12477 2.60155 2.69734 2.82500 2.86360 2.90665 3.05131 3.54301 3.60767 3.86130 4.23544 4.57894 4.63724 5.16715 5.49504 5.70024 5.80833 5.84933 6.09742 6.47756 6.54724 6.60451 6.78606 6.92760 7.02770 7.44185 7.48502 7.60774 7.69534 7.96460 8.00403 8.12399 8.37369 8.45486 9.67002 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.006877 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.214796 B = 4070.780094 C = 5363.693302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C 0.306 3.694 3 C -0.234 4.234 4 C 0.011 3.989 5 C -0.218 4.218 6 C -0.052 4.052 7 C -0.169 4.169 8 C 0.126 3.874 9 C -0.408 4.408 10 H 0.093 0.907 11 C 0.067 3.933 12 N -0.754 5.754 13 Si 0.918 3.082 14 H -0.264 1.264 15 H -0.271 1.271 16 H -0.255 1.255 17 C -0.160 4.160 18 C -0.025 4.025 19 C 0.118 3.882 20 O -0.565 6.565 21 S 0.066 5.934 22 H 0.125 0.875 23 H 0.126 0.874 24 H 0.292 0.708 25 H 0.119 0.881 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.571 4.294 -1.750 4.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.145 5.145 2 C -0.007 4.007 3 C -0.352 4.352 4 C -0.024 4.024 5 C -0.223 4.223 6 C -0.168 4.168 7 C -0.196 4.196 8 C 0.119 3.881 9 C -0.436 4.436 10 H 0.111 0.889 11 C -0.156 4.156 12 N -0.376 5.376 13 Si 0.741 3.259 14 H -0.189 1.189 15 H -0.196 1.196 16 H -0.179 1.179 17 C -0.179 4.179 18 C -0.028 4.028 19 C 0.041 3.959 20 O -0.369 6.369 21 S 0.328 5.672 22 H 0.143 0.857 23 H 0.143 0.857 24 H 0.103 0.897 25 H 0.137 0.863 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -0.411 1.962 -1.417 2.455 hybrid contribution 1.069 1.576 -0.092 1.906 sum 0.658 3.538 -1.509 3.902 Atomic orbital electron populations 1.81164 1.11587 1.08126 1.13577 1.24610 0.91256 0.93049 0.91798 1.18898 0.87710 0.98567 1.29979 1.20079 0.92065 0.96725 0.93502 1.17124 0.91180 0.92588 1.21389 1.22383 0.96743 0.94715 1.03008 1.20569 0.87773 1.00059 1.11227 1.17587 0.93155 0.90339 0.86998 1.19906 0.93639 1.02895 1.27196 0.88940 1.26186 1.00279 0.96331 0.92837 1.69792 1.36250 1.15178 1.16400 0.86119 0.80480 0.78676 0.80663 1.18911 1.19555 1.17868 1.20637 0.95021 0.95638 1.06579 1.18862 0.93010 0.91182 0.99737 1.20882 0.85871 0.89921 0.99237 1.86542 1.31615 1.21420 1.97359 1.83681 0.95436 1.06637 1.81462 0.85739 0.85666 0.89663 0.86316 0.93017 0.93056 0.78180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -9.11 18.54 41.84 0.78 -8.34 15 2 C 0.31 5.75 15.77 -22.47 -0.35 5.40 15 3 C -0.23 -4.42 6.23 -38.69 -0.24 -4.66 15 4 C 0.01 0.20 9.61 -40.03 -0.38 -0.19 15 5 C -0.22 -4.48 5.84 -106.89 -0.62 -5.10 15 6 C -0.05 -1.16 6.45 -38.45 -0.25 -1.40 15 7 C -0.17 -3.96 8.71 -38.52 -0.34 -4.30 15 8 C 0.13 2.96 5.56 -106.92 -0.59 2.37 15 9 C -0.41 -9.27 9.03 -37.92 -0.34 -9.62 15 10 H 0.09 1.97 7.90 -52.49 -0.41 1.55 15 11 C 0.07 1.44 5.14 -17.32 -0.09 1.36 15 12 N -0.75 -17.00 10.96 55.55 0.61 -16.39 15 13 Si 0.92 15.98 29.59 -169.99 -5.03 10.95 15 14 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 15 H -0.27 -4.66 7.11 56.52 0.40 -4.26 15 16 H -0.26 -4.42 7.11 56.52 0.40 -4.02 15 17 C -0.16 -3.48 9.02 -39.53 -0.36 -3.83 15 18 C -0.03 -0.50 5.90 -104.20 -0.62 -1.11 15 19 C 0.12 1.82 6.85 36.01 0.25 2.06 15 20 O -0.57 -8.28 12.05 -35.23 -0.42 -8.70 15 21 S 0.07 1.29 23.22 -107.50 -2.50 -1.21 15 22 H 0.12 1.89 7.88 -52.49 -0.41 1.48 15 23 H 0.13 3.04 6.18 -52.49 -0.32 2.71 15 24 H 0.29 5.91 8.30 -40.82 -0.34 5.57 15 25 H 0.12 2.51 6.88 -52.49 -0.36 2.15 15 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.05 0.71 8.14 -51.92 -0.42 0.29 15 28 H 0.37 3.30 9.12 45.56 0.42 3.71 15 LS Contribution 272.33 15.07 4.10 4.10 Total: -1.00 -25.82 272.33 -7.48 -33.30 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: -1.08 Total: 5.31 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: -3.94 Total: -19.03 kcal Atomic # 7 Polarization: -26.11 SS G_CDS: 1.38 Total: -24.73 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: -0.42 Total: -8.70 kcal Atomic # 14 Polarization: 15.98 SS G_CDS: -5.03 Total: 10.95 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.50 Total: -1.21 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -25.82 -7.48 -33.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224113.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.195 kcal (2) G-P(sol) polarization free energy of solvation -25.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds