Wall clock time and date at job start Mon Mar 30 2020 06:14:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.35350 * 124.73506 * 175.66010 * 3 2 1 5 5 C 1.39788 * 115.42759 * 180.02562 * 4 3 2 6 6 C 1.40559 * 112.65266 * 359.97438 * 5 4 3 7 7 C 1.38930 * 120.07301 * 180.02562 * 6 5 4 8 8 C 1.40372 * 120.02537 * 359.97438 * 7 6 5 9 9 C 1.40863 * 120.18532 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00122 * 154.34595 * 9 8 7 11 11 C 1.40021 * 119.99853 * 334.34990 * 9 8 7 12 12 N 1.30796 * 120.00089 * 343.17346 * 11 9 8 13 13 Si 1.86806 * 119.99838 * 163.16909 * 11 9 8 14 14 H 1.48505 * 109.46662 * 90.00191 * 13 11 9 15 15 H 1.48497 * 109.47144 * 209.99911 * 13 11 9 16 16 H 1.48499 * 109.47124 * 330.00152 * 13 11 9 17 17 C 1.41348 * 119.63298 * 0.02562 * 8 7 6 18 18 C 1.35060 * 120.40165 * 0.02562 * 17 8 7 19 19 C 1.50700 * 119.55830 * 179.72911 * 18 17 8 20 20 O 1.42896 * 109.47179 * 359.97438 * 19 18 17 21 21 S 1.75459 * 124.73822 * 355.72360 * 3 2 1 22 22 H 1.07997 * 122.28586 * 359.97438 * 4 3 2 23 23 H 1.08002 * 119.98403 * 179.97438 * 7 6 5 24 24 H 0.96997 * 119.99901 * 179.97438 * 12 11 9 25 25 H 1.07994 * 119.79745 * 180.02562 * 17 8 7 26 26 H 1.09000 * 109.47119 * 119.99760 * 19 18 17 27 27 H 1.09008 * 109.46457 * 239.99356 * 19 18 17 28 28 H 0.96702 * 113.99947 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3387 1.1101 -0.0842 5 6 4.7182 0.8852 -0.0676 6 6 5.0433 -0.4783 0.0360 7 6 6.3740 -0.8765 0.0663 8 6 7.3960 0.0829 -0.0071 9 6 8.7464 -0.3170 0.0227 10 1 9.5039 0.3048 -0.4310 11 6 9.1064 -1.5208 0.6406 12 7 8.2760 -2.1077 1.4632 13 14 10.7728 -2.2888 0.2899 14 1 11.7685 -1.7778 1.2660 15 1 10.6729 -3.7653 0.4117 16 1 11.2017 -1.9335 -1.0867 17 6 7.0627 1.4526 -0.1112 18 6 5.7695 1.8411 -0.1397 19 6 5.4357 3.3069 -0.2449 20 8 6.6440 4.0679 -0.2982 21 16 3.5684 -1.4368 0.1075 22 1 2.9166 2.1013 -0.1598 23 1 6.6221 -1.9245 0.1463 24 1 8.5253 -2.9418 1.8910 25 1 7.8469 2.1929 -0.1683 26 1 4.8547 3.4832 -1.1501 27 1 4.8536 3.6102 0.6254 28 1 6.5049 5.0225 -0.3662 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396224113.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:49 Heat of formation + Delta-G solvation = -9.614730 kcal Electronic energy + Delta-G solvation = -15770.949149 eV Core-core repulsion = 13069.994234 eV Total energy + Delta-G solvation = -2700.954915 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.35809 -37.94267 -37.49798 -36.61132 -34.67446 -32.11814 -31.02059 -27.75603 -26.67097 -24.49568 -22.91759 -21.67563 -19.31384 -19.09552 -18.15201 -17.31993 -16.85548 -16.20045 -15.77471 -15.59936 -15.27315 -15.01129 -14.63529 -14.33566 -14.03665 -13.84597 -13.58249 -13.21945 -13.13551 -12.77423 -12.68137 -12.23436 -11.94572 -11.72299 -11.58882 -11.25745 -11.20334 -10.82504 -10.08504 -9.23634 -8.82169 -8.41767 -6.41079 -0.35943 0.53647 0.94403 1.17851 1.19731 1.41463 1.54213 1.59512 2.02452 2.15355 2.32063 2.65075 3.05933 3.50794 3.53492 4.14857 4.41476 4.50333 4.55217 4.72041 4.89866 4.92537 5.00208 5.18803 5.28182 5.41104 5.78836 5.88497 5.99246 6.07273 6.45584 6.47359 6.69671 6.79212 7.10667 8.11025 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020311 B = 0.006877 C = 0.005219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.214796 B = 4070.780094 C = 5363.693302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.318 3.682 3 C -0.227 4.227 4 C 0.023 3.977 5 C -0.225 4.225 6 C -0.073 4.073 7 C -0.195 4.195 8 C 0.105 3.895 9 C -0.445 4.445 10 H 0.095 0.905 11 C 0.033 3.967 12 N -0.791 5.791 13 Si 0.987 3.013 14 H -0.258 1.258 15 H -0.267 1.267 16 H -0.253 1.253 17 C -0.184 4.184 18 C -0.022 4.022 19 C 0.122 3.878 20 O -0.585 6.585 21 S 0.074 5.926 22 H 0.166 0.834 23 H 0.107 0.893 24 H 0.298 0.702 25 H 0.118 0.882 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.583 5.694 -2.082 6.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C 0.005 3.995 3 C -0.345 4.345 4 C -0.011 4.011 5 C -0.230 4.230 6 C -0.189 4.189 7 C -0.223 4.223 8 C 0.098 3.902 9 C -0.473 4.473 10 H 0.113 0.887 11 C -0.187 4.187 12 N -0.414 5.414 13 Si 0.807 3.193 14 H -0.183 1.183 15 H -0.191 1.191 16 H -0.177 1.177 17 C -0.203 4.203 18 C -0.025 4.025 19 C 0.045 3.955 20 O -0.393 6.393 21 S 0.336 5.664 22 H 0.183 0.817 23 H 0.125 0.875 24 H 0.109 0.891 25 H 0.136 0.864 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -1.405 3.390 -1.750 4.065 hybrid contribution 1.144 1.216 0.004 1.670 sum -0.261 4.606 -1.746 4.933 Atomic orbital electron populations 1.81196 1.11812 1.08414 1.13673 1.24399 0.90904 0.92741 0.91462 1.18978 0.87766 0.98416 1.29318 1.20330 0.90688 0.98372 0.91679 1.17446 0.92561 0.91990 1.20972 1.22672 0.97018 0.96317 1.02862 1.20454 0.88865 0.99314 1.13649 1.17913 0.93672 0.91351 0.87241 1.20146 0.93791 1.04381 1.28945 0.88658 1.26979 1.03606 0.96150 0.91952 1.69841 1.38186 1.15880 1.17517 0.85103 0.76078 0.77742 0.80419 1.18266 1.19093 1.17679 1.20696 0.96194 0.94882 1.08526 1.19363 0.92023 0.94115 0.97021 1.20896 0.86343 0.86891 1.01411 1.86482 1.31701 1.23703 1.97462 1.83668 0.94602 1.06923 1.81205 0.81664 0.87548 0.89107 0.86425 0.90375 0.90772 0.75144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.14 18.54 19.00 0.35 -16.79 15 2 C 0.32 11.01 15.77 88.33 1.39 12.40 15 3 C -0.23 -7.96 6.23 22.85 0.14 -7.82 15 4 C 0.02 0.78 9.61 21.98 0.21 0.99 15 5 C -0.22 -8.86 5.84 -21.34 -0.12 -8.99 15 6 C -0.07 -3.22 6.45 23.00 0.15 -3.07 15 7 C -0.20 -9.58 8.71 22.96 0.20 -9.38 15 8 C 0.11 5.13 5.56 -21.35 -0.12 5.01 15 9 C -0.44 -21.15 9.03 23.35 0.21 -20.94 15 10 H 0.10 4.26 7.90 -2.91 -0.02 4.23 15 11 C 0.03 1.47 5.14 85.28 0.44 1.91 15 12 N -0.79 -37.28 10.96 21.84 0.24 -37.04 15 13 Si 0.99 33.44 29.59 68.60 2.03 35.47 15 14 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 15 H -0.27 -8.72 7.11 99.48 0.71 -8.02 15 16 H -0.25 -8.40 7.11 99.48 0.71 -7.69 15 17 C -0.18 -8.12 9.02 22.30 0.20 -7.92 15 18 C -0.02 -0.86 5.90 -19.59 -0.12 -0.98 15 19 C 0.12 3.32 6.85 71.24 0.49 3.81 15 20 O -0.58 -15.62 12.05 -148.98 -1.79 -17.41 15 21 S 0.07 2.84 23.22 -56.49 -1.31 1.53 15 22 H 0.17 4.12 7.88 -2.91 -0.02 4.09 15 23 H 0.11 5.50 6.18 -2.91 -0.02 5.48 15 24 H 0.30 12.57 8.30 -92.71 -0.77 11.80 15 25 H 0.12 5.08 6.88 -2.91 -0.02 5.06 15 26 H 0.08 1.75 8.14 -2.39 -0.02 1.73 15 27 H 0.07 1.72 8.14 -2.38 -0.02 1.70 15 28 H 0.40 5.74 9.12 -74.06 -0.68 5.06 15 Total: -1.00 -56.61 272.33 3.14 -53.47 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.55 Total: 15.75 kcal Atomic # 6 Polarization: -38.05 SS G_CDS: 3.07 Total: -34.97 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.59 Total: -53.83 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -1.79 Total: -17.41 kcal Atomic # 14 Polarization: 33.44 SS G_CDS: 2.03 Total: 35.47 kcal Atomic # 16 Polarization: 2.84 SS G_CDS: -1.31 Total: 1.53 kcal Total: -56.61 3.14 -53.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224113.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.857 kcal (2) G-P(sol) polarization free energy of solvation -56.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds