Wall clock time and date at job start Mon Mar 30 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35584 * 117.00741 * 2 1 4 4 C 1.37985 * 119.70961 * 359.97438 * 3 2 1 5 5 C 1.38093 * 120.65719 * 179.72146 * 4 3 2 6 6 C 1.39517 * 120.14485 * 359.97438 * 5 4 3 7 7 C 1.43202 * 119.89755 * 180.02562 * 6 5 4 8 8 N 6.70878 * 116.32254 * 0.23421 * 2 1 3 9 9 C 1.41063 * 120.20197 * 0.02562 * 6 5 4 10 10 S 1.75988 * 130.23658 * 180.02562 * 9 6 5 11 11 C 1.75466 * 91.76512 * 180.02562 * 10 9 6 12 12 C 1.39886 * 124.84915 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99577 * 180.02562 * 12 11 10 14 14 C 1.40122 * 120.00453 * 0.02777 * 12 11 10 15 15 N 1.30803 * 120.00282 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00040 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47090 * 90.00197 * 16 14 12 18 18 H 1.48497 * 109.47131 * 209.99831 * 16 14 12 19 19 H 1.48499 * 109.47025 * 329.99861 * 16 14 12 20 20 C 1.36974 * 110.29394 * 0.02562 * 11 10 9 21 21 C 1.39709 * 115.03874 * 0.02562 * 20 11 10 22 22 H 1.08993 * 109.47224 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47274 * 300.00695 * 1 2 3 24 24 H 1.09000 * 109.46842 * 60.00180 * 1 2 3 25 25 H 1.07997 * 119.67029 * 359.73971 * 4 3 2 26 26 H 1.08002 * 119.92839 * 179.97438 * 5 4 3 27 27 H 0.96997 * 120.00601 * 179.97438 * 15 14 12 28 28 H 1.07993 * 122.47866 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2080 0.0000 4 6 1.2874 2.3615 -0.0005 5 6 1.8941 3.6020 0.0052 6 6 3.2857 3.7014 0.0122 7 6 3.9092 4.9905 0.0187 8 7 4.4038 6.0131 0.0246 9 6 4.0803 2.5359 0.0129 10 16 5.8307 2.3535 0.0215 11 6 5.7027 0.6035 0.0148 12 6 6.7893 -0.2775 0.0170 13 1 6.6196 -1.3441 0.0121 14 6 8.0977 0.2238 0.0256 15 7 8.3033 1.5156 0.0311 16 14 9.5487 -0.9527 0.0292 17 1 9.9406 -1.2597 -1.3699 18 1 10.6931 -0.3251 0.7374 19 1 9.1658 -2.2086 0.7230 20 6 4.3868 0.2235 0.0060 21 6 3.4675 1.2755 0.0038 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2096 2.2935 -0.0052 26 1 1.2899 4.4973 0.0043 27 1 9.2090 1.8626 0.0374 28 1 4.0824 -0.8127 0.0004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396224547.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:02 Heat of formation + Delta-G solvation = 7.933157 kcal Electronic energy + Delta-G solvation = -15850.670020 eV Core-core repulsion = 13150.476038 eV Total energy + Delta-G solvation = -2700.193982 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.44467 -37.19404 -35.85219 -34.84455 -33.24843 -29.64913 -29.35696 -27.18283 -25.42750 -22.63576 -22.29584 -19.81496 -18.41173 -17.45468 -17.05980 -15.84310 -15.32190 -15.26032 -14.47951 -13.99267 -13.66623 -13.36075 -13.10590 -12.87996 -12.36824 -12.22147 -12.00002 -11.69035 -11.64585 -11.55799 -11.22925 -10.92433 -10.65999 -10.53569 -10.25542 -10.13722 -9.50313 -9.23139 -8.19503 -7.52250 -7.27422 -6.52946 -4.73130 1.49628 2.03636 2.70652 2.81906 2.88567 3.04135 3.22515 3.31268 3.49954 3.63935 3.85626 3.92795 4.54529 4.71706 4.91053 5.30974 5.41607 5.50888 5.59600 5.69959 6.06639 6.35934 6.54950 6.61776 6.82320 7.00072 7.10548 7.34944 7.35442 7.59141 7.82049 8.04222 8.16413 8.18972 8.33315 9.58300 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.007388 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.331075 B = 3789.064964 C = 5104.245106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.125 3.875 4 C -0.213 4.213 5 C -0.098 4.098 6 C -0.012 4.012 7 C 0.274 3.726 8 N -0.454 5.454 9 C -0.211 4.211 10 S 0.168 5.832 11 C 0.046 3.954 12 C -0.378 4.378 13 H 0.102 0.898 14 C 0.052 3.948 15 N -0.778 5.778 16 Si 0.940 3.060 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.255 1.255 20 C -0.342 4.342 21 C 0.003 3.997 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.120 0.880 26 H 0.117 0.883 27 H 0.304 0.696 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.486 -3.000 -0.031 7.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.078 3.922 4 C -0.235 4.235 5 C -0.121 4.121 6 C -0.021 4.021 7 C -0.040 4.040 8 N -0.131 5.131 9 C -0.329 4.329 10 S 0.430 5.570 11 C -0.074 4.074 12 C -0.412 4.412 13 H 0.120 0.880 14 C -0.169 4.169 15 N -0.404 5.404 16 Si 0.763 3.237 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.179 1.179 20 C -0.366 4.366 21 C -0.006 4.006 22 H 0.109 0.891 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.138 0.862 26 H 0.135 0.865 27 H 0.117 0.883 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.212 -0.485 -0.006 4.240 hybrid contribution -1.113 -1.677 -0.018 2.012 sum -5.325 -2.162 -0.025 5.747 Atomic orbital electron populations 1.22944 0.79884 1.02975 1.00863 1.86000 1.19975 1.27869 1.88520 1.19213 0.90723 0.83464 0.98837 1.20408 0.98671 0.91790 1.12593 1.20223 0.91435 0.96725 1.03724 1.15161 0.91784 0.83993 1.11157 1.25975 0.92715 0.92766 0.92563 1.81091 1.08746 1.12131 1.11117 1.23553 1.03083 0.93620 1.12604 1.85184 0.91770 1.03256 1.76784 1.21445 0.95599 0.95025 0.95296 1.19335 0.88777 0.95515 1.37552 0.88012 1.26342 1.02020 0.96257 0.92330 1.68536 1.25759 1.13409 1.32724 0.85719 0.78091 0.80059 0.79819 1.18724 1.19562 1.17896 1.19494 0.90118 0.97357 1.29671 1.17207 0.89277 0.92600 1.01523 0.89073 0.93140 0.93155 0.86191 0.86483 0.88289 0.86731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.80 101.05 0.99 1.34 15 2 O -0.31 -5.65 10.33 -18.45 -0.19 -5.84 15 3 C 0.13 2.50 6.78 -38.06 -0.26 2.24 15 4 C -0.21 -3.65 8.97 -39.73 -0.36 -4.00 15 5 C -0.10 -1.72 9.73 -39.16 -0.38 -2.10 15 6 C -0.01 -0.25 5.77 -106.42 -0.61 -0.87 15 7 C 0.27 5.68 15.04 -22.48 -0.34 5.34 15 8 N -0.45 -9.74 18.54 41.83 0.78 -8.97 15 9 C -0.21 -4.84 6.34 -37.79 -0.24 -5.08 15 10 S 0.17 4.07 19.80 -107.50 -2.13 1.94 15 11 C 0.05 1.14 6.11 -39.42 -0.24 0.90 15 12 C -0.38 -8.99 9.26 -38.26 -0.35 -9.35 15 13 H 0.10 2.27 7.85 -52.48 -0.41 1.86 15 14 C 0.05 1.14 5.50 -17.28 -0.10 1.05 15 15 N -0.78 -17.89 10.58 55.56 0.59 -17.30 15 16 Si 0.94 16.49 29.56 -169.99 -5.03 11.46 15 17 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 18 H -0.27 -4.66 7.11 56.52 0.40 -4.26 15 19 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 20 C -0.34 -8.32 9.97 -39.49 -0.39 -8.71 15 21 C 0.00 0.07 5.86 -107.01 -0.63 -0.56 15 22 H 0.09 0.89 8.14 -51.93 -0.42 0.46 15 23 H 0.05 0.55 7.64 -51.93 -0.40 0.15 15 24 H 0.05 0.55 7.63 -51.93 -0.40 0.15 15 25 H 0.12 1.63 6.19 -52.49 -0.32 1.30 15 26 H 0.12 1.71 8.06 -52.49 -0.42 1.29 15 27 H 0.30 6.28 8.30 -40.82 -0.34 5.94 15 28 H 0.11 2.72 8.06 -52.49 -0.42 2.30 15 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -26.63 271.11 -6.74 -33.37 By element: Atomic # 1 Polarization: 2.96 SS G_CDS: -1.93 Total: 1.03 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: -2.91 Total: -19.79 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 1.36 Total: -26.27 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.19 Total: -5.84 kcal Atomic # 14 Polarization: 16.49 SS G_CDS: -5.03 Total: 11.46 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.13 Total: 1.94 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.63 -6.74 -33.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224547.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.300 kcal (2) G-P(sol) polarization free energy of solvation -26.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds