Wall clock time and date at job start Mon Mar 30 2020 06:25:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35584 * 117.00741 * 2 1 4 4 C 1.37985 * 119.70961 * 359.97438 * 3 2 1 5 5 C 1.38093 * 120.65719 * 179.72146 * 4 3 2 6 6 C 1.39517 * 120.14485 * 359.97438 * 5 4 3 7 7 C 1.43202 * 119.89755 * 180.02562 * 6 5 4 8 8 N 6.70878 * 116.32254 * 0.23421 * 2 1 3 9 9 C 1.41063 * 120.20197 * 0.02562 * 6 5 4 10 10 S 1.75988 * 130.23658 * 180.02562 * 9 6 5 11 11 C 1.75466 * 91.76512 * 180.02562 * 10 9 6 12 12 C 1.39886 * 124.84915 * 179.97438 * 11 10 9 13 13 H 1.08006 * 119.99577 * 180.02562 * 12 11 10 14 14 C 1.40122 * 120.00453 * 0.02777 * 12 11 10 15 15 N 1.30803 * 120.00282 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 120.00040 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47090 * 90.00197 * 16 14 12 18 18 H 1.48497 * 109.47131 * 209.99831 * 16 14 12 19 19 H 1.48499 * 109.47025 * 329.99861 * 16 14 12 20 20 C 1.36974 * 110.29394 * 0.02562 * 11 10 9 21 21 C 1.39709 * 115.03874 * 0.02562 * 20 11 10 22 22 H 1.08993 * 109.47224 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47274 * 300.00695 * 1 2 3 24 24 H 1.09000 * 109.46842 * 60.00180 * 1 2 3 25 25 H 1.07997 * 119.67029 * 359.73971 * 4 3 2 26 26 H 1.08002 * 119.92839 * 179.97438 * 5 4 3 27 27 H 0.96997 * 120.00601 * 179.97438 * 15 14 12 28 28 H 1.07993 * 122.47866 * 179.97438 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0446 1.2080 0.0000 4 6 1.2874 2.3615 -0.0005 5 6 1.8941 3.6020 0.0052 6 6 3.2857 3.7014 0.0122 7 6 3.9092 4.9905 0.0187 8 7 4.4038 6.0131 0.0246 9 6 4.0803 2.5359 0.0129 10 16 5.8307 2.3535 0.0215 11 6 5.7027 0.6035 0.0148 12 6 6.7893 -0.2775 0.0170 13 1 6.6196 -1.3441 0.0121 14 6 8.0977 0.2238 0.0256 15 7 8.3033 1.5156 0.0311 16 14 9.5487 -0.9527 0.0292 17 1 9.9406 -1.2597 -1.3699 18 1 10.6931 -0.3251 0.7374 19 1 9.1658 -2.2086 0.7230 20 6 4.3868 0.2235 0.0060 21 6 3.4675 1.2755 0.0038 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.2096 2.2935 -0.0052 26 1 1.2899 4.4973 0.0043 27 1 9.2090 1.8626 0.0374 28 1 4.0824 -0.8127 0.0004 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396224547.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:02 Heat of formation + Delta-G solvation = -6.079580 kcal Electronic energy + Delta-G solvation = -15851.277658 eV Core-core repulsion = 13150.476038 eV Total energy + Delta-G solvation = -2700.801619 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.92493 -38.69201 -37.51754 -36.50258 -34.89290 -31.16189 -31.01052 -28.36251 -27.06409 -24.21802 -23.87378 -21.44614 -20.11991 -18.92623 -18.67337 -17.40795 -16.77316 -16.49433 -16.11497 -15.61182 -15.09476 -14.96812 -14.61926 -14.45972 -13.85609 -13.84000 -13.51070 -13.21110 -13.12835 -13.08967 -12.74666 -12.26741 -12.18079 -12.01717 -11.70100 -11.66844 -11.10064 -11.04252 -9.81246 -9.22486 -8.92272 -8.27601 -6.50519 -0.07607 0.40875 1.22436 1.28245 1.36890 1.54436 1.66754 1.69064 1.81664 2.13054 2.20310 2.59788 2.89071 3.13675 3.20876 4.11857 4.15285 4.46814 4.54475 4.61225 4.77796 4.81657 4.91742 4.95560 5.31121 5.42997 5.50060 5.61703 5.78017 5.86424 6.07456 6.37073 6.52715 6.54921 6.73818 7.96222 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.021042 B = 0.007388 C = 0.005484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.331075 B = 3789.064964 C = 5104.245106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.334 6.334 3 C 0.131 3.869 4 C -0.203 4.203 5 C -0.063 4.063 6 C -0.038 4.038 7 C 0.283 3.717 8 N -0.473 5.473 9 C -0.219 4.219 10 S 0.130 5.870 11 C 0.021 3.979 12 C -0.414 4.414 13 H 0.105 0.895 14 C 0.017 3.983 15 N -0.807 5.807 16 Si 1.012 2.988 17 H -0.257 1.257 18 H -0.263 1.263 19 H -0.251 1.251 20 C -0.364 4.364 21 C -0.029 4.029 22 H 0.114 0.886 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.169 0.831 26 H 0.160 0.840 27 H 0.311 0.689 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.786 -2.950 -0.034 9.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.083 3.917 4 C -0.224 4.224 5 C -0.086 4.086 6 C -0.047 4.047 7 C -0.030 4.030 8 N -0.150 5.150 9 C -0.337 4.337 10 S 0.391 5.609 11 C -0.098 4.098 12 C -0.447 4.447 13 H 0.123 0.877 14 C -0.201 4.201 15 N -0.434 5.434 16 Si 0.831 3.169 17 H -0.181 1.181 18 H -0.187 1.187 19 H -0.174 1.174 20 C -0.389 4.389 21 C -0.038 4.038 22 H 0.133 0.867 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.187 0.813 26 H 0.178 0.822 27 H 0.125 0.875 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.548 -0.434 -0.009 6.562 hybrid contribution -0.744 -1.661 -0.020 1.820 sum -7.292 -2.095 -0.030 7.587 Atomic orbital electron populations 1.23392 0.76444 1.05386 1.02620 1.85984 1.23481 1.27269 1.87994 1.19363 0.89841 0.85266 0.97280 1.20910 1.00891 0.90225 1.10363 1.20813 0.90239 0.98687 0.98829 1.15347 0.93047 0.82934 1.13392 1.26014 0.92357 0.92633 0.91978 1.81093 1.08962 1.12876 1.12091 1.23601 1.02132 0.94728 1.13247 1.85017 0.94209 1.03706 1.77992 1.21708 0.96367 0.95333 0.96377 1.19625 0.89809 0.95683 1.39573 0.87730 1.27273 1.04022 0.97773 0.90999 1.68611 1.26741 1.14971 1.33105 0.84692 0.74460 0.77785 0.80003 1.18117 1.18665 1.17438 1.19566 0.90580 0.97471 1.31290 1.17433 0.91204 0.92133 1.03030 0.86728 0.91223 0.91220 0.81340 0.82204 0.87546 0.87539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.80 113.37 1.11 1.43 15 2 O -0.33 -11.40 10.33 -88.93 -0.92 -12.32 15 3 C 0.13 4.95 6.78 23.26 0.16 5.11 15 4 C -0.20 -6.00 8.97 22.18 0.20 -5.80 15 5 C -0.06 -1.95 9.73 22.54 0.22 -1.73 15 6 C -0.04 -1.52 5.77 -21.03 -0.12 -1.64 15 7 C 0.28 11.52 15.04 88.33 1.33 12.85 15 8 N -0.47 -20.02 18.54 19.00 0.35 -19.67 15 9 C -0.22 -10.21 6.34 23.43 0.15 -10.07 15 10 S 0.13 6.59 19.80 -56.49 -1.12 5.47 15 11 C 0.02 1.11 6.11 22.37 0.14 1.25 15 12 C -0.41 -20.72 9.26 23.13 0.21 -20.50 15 13 H 0.10 4.94 7.85 -2.91 -0.02 4.91 15 14 C 0.02 0.78 5.50 85.30 0.47 1.25 15 15 N -0.81 -38.60 10.58 21.86 0.23 -38.37 15 16 Si 1.01 34.13 29.56 68.60 2.03 36.16 15 17 H -0.26 -8.36 7.11 99.48 0.71 -7.65 15 18 H -0.26 -8.40 7.11 99.48 0.71 -7.70 15 19 H -0.25 -8.19 7.11 99.48 0.71 -7.48 15 20 C -0.36 -18.60 9.97 22.33 0.22 -18.38 15 21 C -0.03 -1.37 5.86 -21.41 -0.13 -1.50 15 22 H 0.11 1.78 8.14 -2.39 -0.02 1.76 15 23 H 0.07 1.16 7.64 -2.39 -0.02 1.14 15 24 H 0.07 1.16 7.63 -2.39 -0.02 1.14 15 25 H 0.17 3.39 6.19 -2.91 -0.02 3.37 15 26 H 0.16 3.65 8.06 -2.91 -0.02 3.63 15 27 H 0.31 13.26 8.30 -92.71 -0.77 12.49 15 28 H 0.11 5.37 8.06 -2.91 -0.02 5.35 15 Total: -1.00 -61.24 271.11 5.74 -55.50 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 1.21 Total: 10.97 kcal Atomic # 6 Polarization: -41.70 SS G_CDS: 3.96 Total: -37.74 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: 0.58 Total: -58.04 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: -0.92 Total: -12.32 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Atomic # 16 Polarization: 6.59 SS G_CDS: -1.12 Total: 5.47 kcal Total: -61.24 5.74 -55.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224547.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.421 kcal (2) G-P(sol) polarization free energy of solvation -61.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds