Wall clock time and date at job start Mon Mar 30 2020 06:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35725 * 117.00137 * 2 1 4 4 C 1.38088 * 119.61637 * 359.97438 * 3 2 1 5 5 C 1.39689 * 122.40880 * 180.02562 * 4 3 2 6 6 S 1.76241 * 130.06354 * 179.97438 * 5 4 3 7 7 C 1.75468 * 91.55455 * 180.02562 * 6 5 4 8 8 C 1.32743 * 110.70040 * 0.02562 * 7 6 5 9 9 C 1.39889 * 120.74428 * 0.02562 * 5 4 3 10 10 C 1.47878 * 118.38653 * 0.02562 * 9 5 4 11 11 C 1.39868 * 120.67791 * 180.02562 * 10 9 5 12 12 H 1.07998 * 120.00352 * 219.68995 * 11 10 9 13 13 C 1.40328 * 119.99985 * 39.69219 * 11 10 9 14 14 N 1.30652 * 119.99859 * 19.85389 * 13 11 10 15 15 Si 1.86798 * 120.00279 * 199.86071 * 13 11 10 16 16 H 1.48498 * 109.47358 * 59.99531 * 15 13 11 17 17 H 1.48504 * 109.46996 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47035 * 299.99455 * 15 13 11 19 19 C 1.39986 * 119.61826 * 179.97438 * 3 2 1 20 20 C 1.43196 * 120.47507 * 359.72983 * 19 3 2 21 21 N 3.52781 * 165.58446 * 179.30910 * 2 1 3 22 22 H 1.09000 * 109.47032 * 300.00386 * 1 2 3 23 23 H 1.09000 * 109.47340 * 60.00169 * 1 2 3 24 24 H 1.09000 * 109.47246 * 180.02562 * 1 2 3 25 25 H 1.08002 * 118.79781 * 0.02562 * 4 3 2 26 26 H 1.08001 * 124.65487 * 179.97438 * 7 6 5 27 27 H 1.08000 * 122.09510 * 180.02562 * 8 7 6 28 28 H 0.96999 * 119.99917 * 183.35776 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2854 2.3624 -0.0005 5 6 1.8582 3.6364 -0.0011 6 16 1.0931 5.2241 -0.0024 7 6 2.6526 6.0284 -0.0030 8 6 3.6388 5.1399 -0.0028 9 6 3.2480 3.7956 -0.0017 10 6 4.0945 2.5831 -0.0023 11 6 5.4894 2.6866 -0.0023 12 1 6.0812 2.0091 -0.5999 13 6 6.1199 3.6708 0.7742 14 7 5.4822 4.2240 1.7714 15 14 7.8709 4.1900 0.3822 16 1 7.9293 4.7313 -0.9994 17 1 8.3034 5.2372 1.3423 18 1 8.7721 3.0148 0.4919 19 6 3.4436 1.2732 0.0005 20 6 4.2254 0.0735 0.0069 21 7 4.8457 -0.8782 0.0106 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2088 2.2760 -0.0005 26 1 2.7912 7.0995 -0.0043 27 1 4.6776 5.4355 -0.0027 28 1 5.8998 4.9383 2.2776 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396224600.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:02 Heat of formation + Delta-G solvation = 26.050756 kcal Electronic energy + Delta-G solvation = -16341.781877 eV Core-core repulsion = 13642.373533 eV Total energy + Delta-G solvation = -2699.408344 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.17746 -37.36274 -35.31340 -34.12707 -33.13752 -30.22769 -28.71961 -26.45405 -25.61861 -23.05514 -21.54561 -20.04630 -18.58752 -16.99306 -16.46850 -16.03949 -15.48872 -15.17526 -14.95086 -14.08559 -13.45963 -13.00776 -12.79572 -12.62348 -12.10954 -12.03663 -11.92396 -11.73358 -11.55333 -11.32968 -11.09083 -11.06540 -10.83575 -10.67207 -10.33216 -9.74814 -9.54055 -9.17597 -8.36411 -7.45275 -7.15616 -6.74943 -4.96575 1.74719 2.12363 2.47857 2.83754 2.85225 2.89726 2.93241 3.29809 3.57611 3.89990 3.99799 4.09834 4.37457 5.13137 5.35477 5.47027 5.55133 5.75079 5.85771 5.99428 6.23560 6.45228 6.51768 6.59984 6.82727 6.83949 6.98628 7.33805 7.47018 7.48465 7.86459 8.00426 8.20778 8.28398 8.90779 9.56104 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.010618 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.986516 B = 2636.378211 C = 4231.804789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.238 3.762 4 C -0.313 4.313 5 C -0.030 4.030 6 S 0.015 5.985 7 C -0.276 4.276 8 C -0.027 4.027 9 C -0.156 4.156 10 C 0.228 3.772 11 C -0.422 4.422 12 H 0.099 0.901 13 C 0.079 3.921 14 N -0.737 5.737 15 Si 0.910 3.090 16 H -0.254 1.254 17 H -0.270 1.270 18 H -0.257 1.257 19 C -0.218 4.218 20 C 0.313 3.687 21 N -0.507 5.507 22 H 0.053 0.947 23 H 0.053 0.947 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.146 0.854 27 H 0.128 0.872 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.028 4.265 -1.610 6.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.233 6.233 3 C 0.187 3.813 4 C -0.339 4.339 5 C -0.147 4.147 6 S 0.276 5.724 7 C -0.409 4.409 8 C -0.056 4.056 9 C -0.163 4.163 10 C 0.220 3.780 11 C -0.448 4.448 12 H 0.117 0.883 13 C -0.148 4.148 14 N -0.357 5.357 15 Si 0.732 3.268 16 H -0.178 1.178 17 H -0.195 1.195 18 H -0.181 1.181 19 C -0.226 4.226 20 C 0.004 3.996 21 N -0.187 5.187 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.108 0.892 25 H 0.127 0.873 26 H 0.164 0.836 27 H 0.145 0.855 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.421 3.368 -1.350 6.523 hybrid contribution 1.560 0.501 0.073 1.641 sum -3.860 3.869 -1.277 5.613 Atomic orbital electron populations 1.22929 0.79418 1.02723 1.01343 1.86039 1.20723 1.28183 1.88374 1.18216 0.89874 0.82823 0.90355 1.19216 0.97676 0.89292 1.27668 1.22133 0.95780 0.95392 1.01388 1.83487 1.10480 0.97863 1.80594 1.24592 0.94310 1.01817 1.20206 1.19718 0.99216 0.91329 0.95382 1.18903 0.90497 0.93002 1.13946 1.18904 0.91490 0.86036 0.81554 1.19608 0.91612 1.12797 1.20765 0.88331 1.26111 1.01687 0.94024 0.92983 1.69755 1.39576 1.16440 1.09957 0.86271 0.80489 0.79733 0.80290 1.17782 1.19485 1.18071 1.15903 0.86855 0.87624 1.32232 1.25182 0.91727 0.91708 0.91019 1.80989 1.10196 1.12023 1.15480 0.92836 0.92852 0.89239 0.87319 0.83591 0.85469 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.79 101.05 0.99 1.43 15 2 O -0.32 -6.32 9.90 -18.88 -0.19 -6.50 15 3 C 0.24 5.17 6.67 -38.98 -0.26 4.91 15 4 C -0.31 -6.45 8.99 -39.09 -0.35 -6.80 15 5 C -0.03 -0.66 6.47 -38.42 -0.25 -0.90 15 6 S 0.02 0.28 23.30 -107.50 -2.50 -2.22 15 7 C -0.28 -5.20 11.11 28.85 0.32 -4.88 15 8 C -0.03 -0.58 8.26 -40.80 -0.34 -0.92 15 9 C -0.16 -3.59 5.52 -104.68 -0.58 -4.16 15 10 C 0.23 5.51 5.66 -102.11 -0.58 4.93 15 11 C -0.42 -9.93 8.20 -38.19 -0.31 -10.24 15 12 H 0.10 2.30 7.76 -52.49 -0.41 1.90 15 13 C 0.08 1.70 3.86 -17.27 -0.07 1.63 15 14 N -0.74 -16.38 10.82 55.57 0.60 -15.78 15 15 Si 0.91 16.23 29.61 -169.99 -5.03 11.20 15 16 H -0.25 -4.45 7.11 56.52 0.40 -4.05 15 17 H -0.27 -4.63 7.11 56.52 0.40 -4.22 15 18 H -0.26 -4.70 7.11 56.52 0.40 -4.30 15 19 C -0.22 -5.19 5.95 -104.09 -0.62 -5.81 15 20 C 0.31 7.69 14.02 -22.47 -0.31 7.37 15 21 N -0.51 -12.68 18.54 41.84 0.78 -11.90 15 22 H 0.05 0.71 7.62 -51.93 -0.40 0.31 15 23 H 0.05 0.69 7.62 -51.93 -0.40 0.29 15 24 H 0.09 1.01 8.14 -51.93 -0.42 0.58 15 25 H 0.11 1.95 6.09 -52.49 -0.32 1.63 15 26 H 0.15 2.32 8.06 -52.49 -0.42 1.90 15 27 H 0.13 2.64 6.07 -52.49 -0.32 2.32 15 28 H 0.30 5.91 8.30 -40.82 -0.34 5.57 15 LS Contribution 267.62 15.07 4.03 4.03 Total: -1.00 -26.21 267.62 -6.49 -32.70 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -1.82 Total: 1.93 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -2.36 Total: -13.44 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 1.38 Total: -27.69 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.19 Total: -6.50 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.03 Total: 11.20 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -2.50 Total: -2.22 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.21 -6.49 -32.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224600.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.748 kcal (2) G-P(sol) polarization free energy of solvation -26.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds