Wall clock time and date at job start Mon Mar 30 2020 06:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35725 * 117.00137 * 2 1 4 4 C 1.38088 * 119.61637 * 359.97438 * 3 2 1 5 5 C 1.39689 * 122.40880 * 180.02562 * 4 3 2 6 6 S 1.76241 * 130.06354 * 179.97438 * 5 4 3 7 7 C 1.75468 * 91.55455 * 180.02562 * 6 5 4 8 8 C 1.32743 * 110.70040 * 0.02562 * 7 6 5 9 9 C 1.39889 * 120.74428 * 0.02562 * 5 4 3 10 10 C 1.47878 * 118.38653 * 0.02562 * 9 5 4 11 11 C 1.39868 * 120.67791 * 180.02562 * 10 9 5 12 12 H 1.07998 * 120.00352 * 219.68995 * 11 10 9 13 13 C 1.40328 * 119.99985 * 39.69219 * 11 10 9 14 14 N 1.30652 * 119.99859 * 19.85389 * 13 11 10 15 15 Si 1.86798 * 120.00279 * 199.86071 * 13 11 10 16 16 H 1.48498 * 109.47358 * 59.99531 * 15 13 11 17 17 H 1.48504 * 109.46996 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47035 * 299.99455 * 15 13 11 19 19 C 1.39986 * 119.61826 * 179.97438 * 3 2 1 20 20 C 1.43196 * 120.47507 * 359.72983 * 19 3 2 21 21 N 3.52781 * 165.58446 * 179.30910 * 2 1 3 22 22 H 1.09000 * 109.47032 * 300.00386 * 1 2 3 23 23 H 1.09000 * 109.47340 * 60.00169 * 1 2 3 24 24 H 1.09000 * 109.47246 * 180.02562 * 1 2 3 25 25 H 1.08002 * 118.79781 * 0.02562 * 4 3 2 26 26 H 1.08001 * 124.65487 * 179.97438 * 7 6 5 27 27 H 1.08000 * 122.09510 * 180.02562 * 8 7 6 28 28 H 0.96999 * 119.99917 * 183.35776 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2093 0.0000 4 6 1.2854 2.3624 -0.0005 5 6 1.8582 3.6364 -0.0011 6 16 1.0931 5.2241 -0.0024 7 6 2.6526 6.0284 -0.0030 8 6 3.6388 5.1399 -0.0028 9 6 3.2480 3.7956 -0.0017 10 6 4.0945 2.5831 -0.0023 11 6 5.4894 2.6866 -0.0023 12 1 6.0812 2.0091 -0.5999 13 6 6.1199 3.6708 0.7742 14 7 5.4822 4.2240 1.7714 15 14 7.8709 4.1900 0.3822 16 1 7.9293 4.7313 -0.9994 17 1 8.3034 5.2372 1.3423 18 1 8.7721 3.0148 0.4919 19 6 3.4436 1.2732 0.0005 20 6 4.2254 0.0735 0.0069 21 7 4.8457 -0.8782 0.0106 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 0.2088 2.2760 -0.0005 26 1 2.7912 7.0995 -0.0043 27 1 4.6776 5.4355 -0.0027 28 1 5.8998 4.9383 2.2776 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396224600.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:23:01 Heat of formation + Delta-G solvation = 12.620312 kcal Electronic energy + Delta-G solvation = -16342.364265 eV Core-core repulsion = 13642.373533 eV Total energy + Delta-G solvation = -2699.990731 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.72217 -38.92635 -37.17535 -35.78360 -34.75812 -31.89906 -30.25484 -27.78153 -27.26594 -24.69802 -23.16656 -21.65895 -20.17350 -18.67317 -18.06709 -17.59238 -17.02990 -16.55899 -16.49207 -15.60323 -14.98083 -14.59893 -14.47205 -14.28804 -13.86510 -13.56560 -13.50071 -13.38621 -13.08419 -13.02228 -12.58176 -12.44393 -12.42167 -12.08517 -11.84913 -11.34461 -11.12586 -10.73347 -10.01866 -9.06752 -8.78661 -8.31549 -6.69496 0.10562 0.44190 0.92624 1.35086 1.37864 1.45400 1.49534 1.66582 2.09857 2.11079 2.41266 2.50377 2.60924 3.38305 3.59508 4.29897 4.36481 4.47069 4.48388 4.65620 4.75912 4.86947 4.89935 5.00109 5.16271 5.23612 5.39441 5.68293 5.82340 5.87044 6.13791 6.37081 6.53292 6.67016 7.03041 7.97257 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.010618 C = 0.006615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.986516 B = 2636.378211 C = 4231.804789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.235 3.765 4 C -0.309 4.309 5 C -0.061 4.061 6 S 0.076 5.924 7 C -0.263 4.263 8 C -0.054 4.054 9 C -0.174 4.174 10 C 0.206 3.794 11 C -0.449 4.449 12 H 0.086 0.914 13 C 0.053 3.947 14 N -0.760 5.760 15 Si 0.973 3.027 16 H -0.248 1.248 17 H -0.253 1.253 18 H -0.267 1.267 19 C -0.253 4.253 20 C 0.317 3.683 21 N -0.532 5.532 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.119 0.881 25 H 0.137 0.863 26 H 0.180 0.820 27 H 0.125 0.875 28 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.226 6.125 -1.582 8.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.253 6.253 3 C 0.184 3.816 4 C -0.334 4.334 5 C -0.177 4.177 6 S 0.337 5.663 7 C -0.396 4.396 8 C -0.083 4.083 9 C -0.182 4.182 10 C 0.199 3.801 11 C -0.475 4.475 12 H 0.104 0.896 13 C -0.172 4.172 14 N -0.380 5.380 15 Si 0.791 3.209 16 H -0.172 1.172 17 H -0.176 1.176 18 H -0.191 1.191 19 C -0.262 4.262 20 C 0.008 3.992 21 N -0.213 5.213 22 H 0.082 0.918 23 H 0.085 0.915 24 H 0.137 0.863 25 H 0.155 0.845 26 H 0.197 0.803 27 H 0.142 0.858 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.658 5.225 -1.319 8.566 hybrid contribution 1.755 -0.018 0.073 1.757 sum -4.903 5.207 -1.246 7.259 Atomic orbital electron populations 1.23324 0.76434 1.05160 1.02464 1.86013 1.23806 1.27418 1.88051 1.18248 0.89389 0.84000 0.89998 1.19493 0.98948 0.88648 1.26282 1.22557 0.96045 0.97521 1.01609 1.83229 1.08932 0.94871 1.79233 1.25086 0.94255 1.03290 1.16961 1.19732 0.99844 0.91044 0.97716 1.19146 0.91265 0.93425 1.14373 1.19220 0.92172 0.86792 0.81964 1.19742 0.91826 1.14061 1.21824 0.89633 1.26727 1.04892 0.93346 0.92237 1.69750 1.41196 1.16783 1.10282 0.85367 0.75631 0.79236 0.80626 1.17196 1.17630 1.19137 1.16202 0.88178 0.87328 1.34476 1.25496 0.91397 0.91776 0.90485 1.80944 1.10766 1.12673 1.16949 0.91795 0.91485 0.86330 0.84523 0.80308 0.85763 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.79 113.37 1.11 1.63 15 2 O -0.34 -13.24 9.90 -90.47 -0.90 -14.14 15 3 C 0.23 10.25 6.67 22.66 0.15 10.40 15 4 C -0.31 -12.35 8.99 22.58 0.20 -12.14 15 5 C -0.06 -2.54 6.47 23.02 0.15 -2.39 15 6 S 0.08 2.57 23.30 -56.49 -1.32 1.25 15 7 C -0.26 -9.13 11.11 66.65 0.74 -8.39 15 8 C -0.05 -2.24 8.26 21.52 0.18 -2.06 15 9 C -0.17 -8.01 5.52 -19.90 -0.11 -8.12 15 10 C 0.21 10.27 5.66 -18.24 -0.10 10.17 15 11 C -0.45 -21.89 8.20 23.17 0.19 -21.70 15 12 H 0.09 4.23 7.76 -2.91 -0.02 4.21 15 13 C 0.05 2.30 3.86 85.38 0.33 2.63 15 14 N -0.76 -33.76 10.82 21.89 0.24 -33.52 15 15 Si 0.97 33.12 29.61 68.60 2.03 35.15 15 16 H -0.25 -8.17 7.11 99.48 0.71 -7.46 15 17 H -0.25 -7.83 7.11 99.48 0.71 -7.12 15 18 H -0.27 -9.45 7.11 99.48 0.71 -8.74 15 19 C -0.25 -12.48 5.95 -19.52 -0.12 -12.60 15 20 C 0.32 16.18 14.02 88.33 1.24 17.41 15 21 N -0.53 -27.60 18.54 19.00 0.35 -27.25 15 22 H 0.06 1.53 7.62 -2.39 -0.02 1.51 15 23 H 0.07 1.56 7.62 -2.39 -0.02 1.54 15 24 H 0.12 2.36 8.14 -2.39 -0.02 2.34 15 25 H 0.14 4.53 6.09 -2.91 -0.02 4.51 15 26 H 0.18 4.93 8.06 -2.91 -0.02 4.91 15 27 H 0.12 5.09 6.07 -2.91 -0.02 5.07 15 28 H 0.31 12.03 8.30 -92.71 -0.77 11.26 15 Total: -1.00 -57.22 267.62 5.58 -51.64 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.21 Total: 12.04 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 3.96 Total: -25.16 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.59 Total: -60.77 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.90 Total: -14.14 kcal Atomic # 14 Polarization: 33.12 SS G_CDS: 2.03 Total: 35.15 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.32 Total: 1.25 kcal Total: -57.22 5.58 -51.64 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224600.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.259 kcal (2) G-P(sol) polarization free energy of solvation -57.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds