Wall clock time and date at job start Mon Mar 30 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.35350 * 123.09032 * 255.68048 * 3 2 1 5 5 S 1.70005 * 112.11979 * 180.02562 * 4 3 2 6 6 C 1.75822 * 93.05483 * 0.02562 * 5 4 3 7 7 C 1.39070 * 130.24439 * 180.02562 * 6 5 4 8 8 C 1.40311 * 119.99208 * 179.19916 * 7 6 5 9 9 C 1.41069 * 120.16180 * 180.22978 * 8 7 6 10 10 H 1.07994 * 120.00433 * 205.17478 * 9 8 7 11 11 C 1.39877 * 119.99561 * 25.17723 * 9 8 7 12 12 N 1.30882 * 120.00453 * 17.79060 * 11 9 8 13 13 Si 1.86807 * 119.99802 * 197.79253 * 11 9 8 14 14 H 1.48506 * 109.47132 * 59.99890 * 13 11 9 15 15 H 1.48502 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47061 * 299.99814 * 13 11 9 17 17 C 1.41179 * 119.67966 * 0.74524 * 8 7 6 18 18 C 1.35434 * 120.21504 * 359.48889 * 17 8 7 19 19 C 1.50692 * 119.62237 * 180.02562 * 18 17 8 20 20 O 1.42903 * 109.47248 * 0.02562 * 19 18 17 21 21 C 1.39977 * 109.93836 * 359.72718 * 6 5 4 22 22 H 1.08002 * 123.94070 * 0.02562 * 4 3 2 23 23 H 1.08007 * 120.00600 * 359.97438 * 7 6 5 24 24 H 0.97004 * 120.00352 * 180.02562 * 12 11 9 25 25 H 1.08005 * 119.89319 * 179.50287 * 17 8 7 26 26 H 1.09005 * 109.47166 * 120.01733 * 19 18 17 27 27 H 1.09000 * 109.47360 * 240.01692 * 19 18 17 28 28 H 0.96699 * 114.00128 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3068 0.2814 1.0987 5 16 4.9758 0.2028 0.7851 6 6 4.7339 -0.2269 -0.9025 7 6 5.6617 -0.4822 -1.9066 8 6 5.2244 -0.8277 -3.1943 9 6 6.1624 -1.0922 -4.2141 10 1 5.8867 -0.9579 -5.2496 11 6 7.4498 -1.5286 -3.8842 12 7 7.6890 -2.0223 -2.6959 13 14 8.8277 -1.4067 -5.1396 14 1 9.0190 0.0137 -5.5284 15 1 10.0846 -1.9310 -4.5475 16 1 8.4750 -2.2055 -6.3408 17 6 3.8411 -0.8987 -3.4672 18 6 2.9395 -0.6450 -2.4889 19 6 1.4661 -0.7251 -2.7949 20 8 1.2831 -1.0823 -4.1664 21 6 3.3649 -0.3059 -1.1835 22 1 2.8852 0.5268 2.0623 23 1 6.7187 -0.4269 -1.6920 24 1 8.5819 -2.3246 -2.4669 25 1 3.5007 -1.1565 -4.4593 26 1 1.0033 -1.4793 -2.1583 27 1 1.0026 0.2433 -2.6065 28 1 0.3566 -1.1527 -4.4343 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396224926.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:52 Heat of formation + Delta-G solvation = 6.925706 kcal Electronic energy + Delta-G solvation = -16039.548733 eV Core-core repulsion = 13339.311065 eV Total energy + Delta-G solvation = -2700.237668 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.81988 -36.49178 -36.23114 -34.74761 -33.05305 -30.49357 -29.29235 -25.81133 -24.86301 -23.90313 -20.83665 -20.72944 -17.43316 -17.33892 -16.63563 -16.18413 -15.28579 -14.61794 -14.59619 -14.15545 -13.57702 -13.49762 -13.21274 -12.77861 -12.43034 -12.29242 -12.14145 -11.71803 -11.56172 -11.19896 -10.99750 -10.74465 -10.62831 -10.31107 -10.00665 -9.81422 -9.61809 -9.23059 -8.46312 -7.60310 -7.05589 -6.81885 -4.57022 1.28603 2.32388 2.45926 2.69125 2.71303 2.94941 2.96019 3.01090 3.09305 3.73904 3.84929 4.33528 4.57200 4.70408 5.27893 5.34237 5.60772 5.77863 5.91166 6.09875 6.38203 6.58648 6.72729 6.76885 6.98627 7.10285 7.47079 7.54469 7.71922 7.78078 7.85792 8.04878 8.27884 8.55824 8.59856 9.87864 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.007315 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.397006 B = 3826.969401 C = 4985.831246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.289 3.711 3 C -0.012 4.012 4 C -0.235 4.235 5 S 0.120 5.880 6 C -0.090 4.090 7 C -0.156 4.156 8 C 0.120 3.880 9 C -0.432 4.432 10 H 0.087 0.913 11 C 0.072 3.928 12 N -0.772 5.772 13 Si 0.915 3.085 14 H -0.260 1.260 15 H -0.276 1.276 16 H -0.262 1.262 17 C -0.153 4.153 18 C -0.041 4.041 19 C 0.122 3.878 20 O -0.563 6.563 21 C -0.173 4.173 22 H 0.157 0.843 23 H 0.127 0.873 24 H 0.288 0.712 25 H 0.118 0.882 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.476 2.142 2.044 3.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.027 4.027 3 C -0.032 4.032 4 C -0.374 4.374 5 S 0.386 5.614 6 C -0.205 4.205 7 C -0.182 4.182 8 C 0.113 3.887 9 C -0.461 4.461 10 H 0.105 0.895 11 C -0.149 4.149 12 N -0.396 5.396 13 Si 0.738 3.262 14 H -0.185 1.185 15 H -0.200 1.200 16 H -0.187 1.187 17 C -0.172 4.172 18 C -0.043 4.043 19 C 0.045 3.955 20 O -0.367 6.367 21 C -0.179 4.179 22 H 0.174 0.826 23 H 0.145 0.855 24 H 0.099 0.901 25 H 0.136 0.864 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -1.146 2.268 3.182 4.072 hybrid contribution -0.911 -0.289 -1.135 1.484 sum -2.058 1.979 2.047 3.513 Atomic orbital electron populations 1.81146 1.11967 1.10769 1.09080 1.25475 0.92353 0.92551 0.92277 1.15998 0.84042 1.08573 0.94543 1.24539 0.99659 1.11773 1.01433 1.82543 1.00841 1.72692 1.05304 1.22156 0.95904 1.06056 0.96346 1.20620 0.97748 1.07788 0.92058 1.17501 0.91164 0.87764 0.92237 1.19678 0.95057 1.36403 0.94927 0.89455 1.26036 1.00191 0.92298 0.96355 1.69819 1.23635 1.25465 1.20641 0.86242 0.78965 0.80159 0.80831 1.18455 1.20044 1.18670 1.20670 0.92506 1.05254 0.98734 1.18631 0.92706 1.01060 0.91943 1.20877 0.94888 0.97629 0.82128 1.86526 1.30273 1.92924 1.26958 1.17750 0.90699 1.17387 0.92078 0.82579 0.85484 0.90098 0.86397 0.93678 0.93650 0.78263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.40 18.54 41.84 0.78 -7.62 15 2 C 0.29 5.28 12.80 -22.47 -0.29 5.00 15 3 C -0.01 -0.23 5.85 -105.92 -0.62 -0.85 15 4 C -0.23 -3.91 10.63 29.70 0.32 -3.60 15 5 S 0.12 2.10 22.98 -107.50 -2.47 -0.37 15 6 C -0.09 -1.97 6.43 -38.62 -0.25 -2.22 15 7 C -0.16 -3.73 8.73 -38.49 -0.34 -4.07 15 8 C 0.12 2.94 5.56 -106.93 -0.59 2.34 15 9 C -0.43 -10.39 9.03 -37.90 -0.34 -10.73 15 10 H 0.09 2.00 7.90 -52.49 -0.41 1.58 15 11 C 0.07 1.64 5.13 -17.34 -0.09 1.55 15 12 N -0.77 -18.09 10.98 55.54 0.61 -17.48 15 13 Si 0.91 16.91 29.59 -169.99 -5.03 11.88 15 14 H -0.26 -4.80 7.11 56.52 0.40 -4.39 15 15 H -0.28 -4.98 7.11 56.52 0.40 -4.58 15 16 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 17 C -0.15 -3.56 9.03 -39.47 -0.36 -3.92 15 18 C -0.04 -0.89 5.89 -104.41 -0.61 -1.51 15 19 C 0.12 2.29 5.87 36.00 0.21 2.50 15 20 O -0.56 -9.72 12.06 -35.23 -0.42 -10.15 15 21 C -0.17 -3.73 6.01 -104.95 -0.63 -4.36 15 22 H 0.16 2.11 8.06 -52.49 -0.42 1.69 15 23 H 0.13 3.11 6.15 -52.48 -0.32 2.78 15 24 H 0.29 6.10 8.30 -40.82 -0.34 5.76 15 25 H 0.12 2.70 6.90 -52.48 -0.36 2.34 15 26 H 0.05 0.83 7.57 -51.93 -0.39 0.44 15 27 H 0.05 0.82 7.57 -51.93 -0.39 0.43 15 28 H 0.37 4.34 9.12 45.56 0.42 4.76 15 LS Contribution 267.99 15.07 4.04 4.04 Total: -1.00 -26.06 267.99 -7.12 -33.18 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -1.03 Total: 6.40 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -3.59 Total: -19.88 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 1.39 Total: -25.10 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: -0.42 Total: -10.15 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.47 Total: -0.37 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.06 -7.12 -33.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224926.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.110 kcal (2) G-P(sol) polarization free energy of solvation -26.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds