Wall clock time and date at job start Mon Mar 30 2020 06:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.35350 * 123.09032 * 255.68048 * 3 2 1 5 5 S 1.70005 * 112.11979 * 180.02562 * 4 3 2 6 6 C 1.75822 * 93.05483 * 0.02562 * 5 4 3 7 7 C 1.39070 * 130.24439 * 180.02562 * 6 5 4 8 8 C 1.40311 * 119.99208 * 179.19916 * 7 6 5 9 9 C 1.41069 * 120.16180 * 180.22978 * 8 7 6 10 10 H 1.07994 * 120.00433 * 205.17478 * 9 8 7 11 11 C 1.39877 * 119.99561 * 25.17723 * 9 8 7 12 12 N 1.30882 * 120.00453 * 17.79060 * 11 9 8 13 13 Si 1.86807 * 119.99802 * 197.79253 * 11 9 8 14 14 H 1.48506 * 109.47132 * 59.99890 * 13 11 9 15 15 H 1.48502 * 109.47090 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47061 * 299.99814 * 13 11 9 17 17 C 1.41179 * 119.67966 * 0.74524 * 8 7 6 18 18 C 1.35434 * 120.21504 * 359.48889 * 17 8 7 19 19 C 1.50692 * 119.62237 * 180.02562 * 18 17 8 20 20 O 1.42903 * 109.47248 * 0.02562 * 19 18 17 21 21 C 1.39977 * 109.93836 * 359.72718 * 6 5 4 22 22 H 1.08002 * 123.94070 * 0.02562 * 4 3 2 23 23 H 1.08007 * 120.00600 * 359.97438 * 7 6 5 24 24 H 0.97004 * 120.00352 * 180.02562 * 12 11 9 25 25 H 1.08005 * 119.89319 * 179.50287 * 17 8 7 26 26 H 1.09005 * 109.47166 * 120.01733 * 19 18 17 27 27 H 1.09000 * 109.47360 * 240.01692 * 19 18 17 28 28 H 0.96699 * 114.00128 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3068 0.2814 1.0987 5 16 4.9758 0.2028 0.7851 6 6 4.7339 -0.2269 -0.9025 7 6 5.6617 -0.4822 -1.9066 8 6 5.2244 -0.8277 -3.1943 9 6 6.1624 -1.0922 -4.2141 10 1 5.8867 -0.9579 -5.2496 11 6 7.4498 -1.5286 -3.8842 12 7 7.6890 -2.0223 -2.6959 13 14 8.8277 -1.4067 -5.1396 14 1 9.0190 0.0137 -5.5284 15 1 10.0846 -1.9310 -4.5475 16 1 8.4750 -2.2055 -6.3408 17 6 3.8411 -0.8987 -3.4672 18 6 2.9395 -0.6450 -2.4889 19 6 1.4661 -0.7251 -2.7949 20 8 1.2831 -1.0823 -4.1664 21 6 3.3649 -0.3059 -1.1835 22 1 2.8852 0.5268 2.0623 23 1 6.7187 -0.4269 -1.6920 24 1 8.5819 -2.3246 -2.4669 25 1 3.5007 -1.1565 -4.4593 26 1 1.0033 -1.4793 -2.1583 27 1 1.0026 0.2433 -2.6065 28 1 0.3566 -1.1527 -4.4343 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396224926.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:52 Heat of formation + Delta-G solvation = -8.405063 kcal Electronic energy + Delta-G solvation = -16040.213525 eV Core-core repulsion = 13339.311065 eV Total energy + Delta-G solvation = -2700.902460 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.43811 -37.97007 -37.70070 -36.33650 -34.66888 -32.13644 -30.95418 -27.47640 -26.45784 -25.42716 -22.50676 -22.37221 -19.11280 -18.85207 -18.13512 -17.69683 -16.88168 -16.20481 -16.08621 -15.74222 -15.14465 -14.95733 -14.75346 -14.29322 -13.97198 -13.84665 -13.71487 -13.26788 -13.09225 -12.72542 -12.66707 -12.23424 -12.15581 -11.85694 -11.62479 -11.31915 -11.26409 -10.86844 -10.06213 -9.28842 -8.71884 -8.39448 -6.34553 -0.17738 0.75744 0.80184 1.01223 1.16577 1.42306 1.50323 1.54767 1.63779 2.20428 2.33305 2.69132 3.13809 3.35766 3.53085 3.90035 4.10241 4.26087 4.41816 4.58079 4.84436 4.89300 5.03026 5.10146 5.26013 5.41550 5.74799 5.83948 5.97801 6.11028 6.42460 6.52433 6.79004 6.85328 6.89922 8.24771 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.007315 C = 0.005615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.397006 B = 3826.969401 C = 4985.831246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.299 3.701 3 C -0.037 4.037 4 C -0.196 4.196 5 S 0.181 5.819 6 C -0.122 4.122 7 C -0.175 4.175 8 C 0.092 3.908 9 C -0.474 4.474 10 H 0.083 0.917 11 C 0.038 3.962 12 N -0.807 5.807 13 Si 0.983 3.017 14 H -0.259 1.259 15 H -0.266 1.266 16 H -0.260 1.260 17 C -0.172 4.172 18 C -0.054 4.054 19 C 0.133 3.867 20 O -0.576 6.576 21 C -0.175 4.175 22 H 0.202 0.798 23 H 0.114 0.886 24 H 0.294 0.706 25 H 0.111 0.889 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 2.794 3.813 5.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.016 4.016 3 C -0.057 4.057 4 C -0.336 4.336 5 S 0.448 5.552 6 C -0.236 4.236 7 C -0.200 4.200 8 C 0.086 3.914 9 C -0.503 4.503 10 H 0.101 0.899 11 C -0.179 4.179 12 N -0.431 5.431 13 Si 0.803 3.197 14 H -0.183 1.183 15 H -0.190 1.190 16 H -0.184 1.184 17 C -0.191 4.191 18 C -0.056 4.056 19 C 0.056 3.944 20 O -0.384 6.384 21 C -0.181 4.181 22 H 0.219 0.781 23 H 0.132 0.868 24 H 0.105 0.895 25 H 0.129 0.871 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -1.724 2.917 4.938 5.988 hybrid contribution -0.897 -0.426 -1.440 1.749 sum -2.621 2.491 3.498 5.031 Atomic orbital electron populations 1.81169 1.11993 1.11255 1.09125 1.25220 0.91976 0.92260 0.92184 1.15834 0.84403 1.11225 0.94201 1.25181 0.99256 1.06715 1.02415 1.82430 1.00828 1.70814 1.01130 1.22524 0.96031 1.06125 0.98954 1.20525 0.97507 1.09231 0.92782 1.17804 0.91930 0.88562 0.93081 1.19856 0.96574 1.39050 0.94800 0.89868 1.26770 1.01740 0.91242 0.98164 1.69856 1.24430 1.26544 1.22300 0.85224 0.76135 0.79985 0.78315 1.18340 1.18970 1.18437 1.20691 0.92627 1.06752 0.99057 1.19032 0.94351 1.00191 0.92033 1.20710 0.92744 0.98111 0.82871 1.86484 1.32858 1.92855 1.26220 1.18101 0.91159 1.16009 0.92857 0.78144 0.86812 0.89490 0.87115 0.93191 0.92855 0.75410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -15.76 18.54 19.00 0.35 -15.41 15 2 C 0.30 10.07 12.80 88.33 1.13 11.20 15 3 C -0.04 -1.30 5.85 -20.71 -0.12 -1.42 15 4 C -0.20 -5.65 10.63 67.15 0.71 -4.93 15 5 S 0.18 5.81 22.98 -56.49 -1.30 4.51 15 6 C -0.12 -5.30 6.43 22.89 0.15 -5.15 15 7 C -0.17 -8.66 8.73 22.97 0.20 -8.46 15 8 C 0.09 4.75 5.56 -21.36 -0.12 4.64 15 9 C -0.47 -24.12 9.03 23.36 0.21 -23.91 15 10 H 0.08 4.08 7.90 -2.91 -0.02 4.06 15 11 C 0.04 1.80 5.13 85.23 0.44 2.24 15 12 N -0.81 -39.19 10.98 21.82 0.24 -38.95 15 13 Si 0.98 35.51 29.59 68.60 2.03 37.54 15 14 H -0.26 -9.20 7.11 99.48 0.71 -8.50 15 15 H -0.27 -9.03 7.11 99.48 0.71 -8.32 15 16 H -0.26 -9.19 7.11 99.48 0.71 -8.49 15 17 C -0.17 -8.39 9.03 22.34 0.20 -8.19 15 18 C -0.05 -2.37 5.89 -19.73 -0.12 -2.49 15 19 C 0.13 4.88 5.87 71.23 0.42 5.30 15 20 O -0.58 -19.64 12.06 -148.98 -1.80 -21.43 15 21 C -0.17 -7.40 6.01 -20.08 -0.12 -7.52 15 22 H 0.20 4.08 8.06 -2.91 -0.02 4.05 15 23 H 0.11 5.82 6.15 -2.91 -0.02 5.80 15 24 H 0.29 12.82 8.30 -92.71 -0.77 12.05 15 25 H 0.11 5.37 6.90 -2.91 -0.02 5.35 15 26 H 0.05 1.78 7.57 -2.38 -0.02 1.76 15 27 H 0.05 1.86 7.57 -2.39 -0.02 1.84 15 28 H 0.40 8.73 9.12 -74.06 -0.68 8.05 15 Total: -1.00 -57.84 267.99 3.07 -54.77 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.56 Total: 17.66 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 2.98 Total: -38.69 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 0.59 Total: -54.36 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -1.80 Total: -21.43 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Atomic # 16 Polarization: 5.81 SS G_CDS: -1.30 Total: 4.51 kcal Total: -57.84 3.07 -54.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224926.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.366 kcal (2) G-P(sol) polarization free energy of solvation -57.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds