Wall clock time and date at job start Mon Mar 30 2020 06:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.38880 * 123.26702 * 141.82221 * 3 2 1 5 5 C 1.39150 * 124.64726 * 0.03826 * 4 3 2 6 6 H 1.08001 * 119.99971 * 353.17392 * 5 4 3 7 7 C 1.40633 * 119.99817 * 173.16941 * 5 4 3 8 8 N 1.30487 * 120.00054 * 6.61709 * 7 5 4 9 9 Si 1.86799 * 120.00024 * 186.61424 * 7 5 4 10 10 H 1.48503 * 109.47160 * 94.99034 * 9 7 5 11 11 H 1.48498 * 109.47129 * 214.98956 * 9 7 5 12 12 H 1.48496 * 109.47027 * 334.98703 * 9 7 5 13 13 S 1.75195 * 110.70126 * 180.02562 * 4 3 2 14 14 C 1.75837 * 92.73940 * 359.97438 * 13 4 3 15 15 C 1.39936 * 129.77483 * 180.02562 * 14 13 4 16 16 C 1.37564 * 120.34913 * 179.97438 * 15 14 13 17 17 C 1.50706 * 119.88405 * 180.02562 * 16 15 14 18 18 O 1.42891 * 109.47054 * 89.99896 * 17 16 15 19 19 C 1.38904 * 120.23258 * 0.02751 * 16 15 14 20 20 C 1.36064 * 120.48049 * 359.97438 * 19 16 15 21 21 C 1.39866 * 110.72987 * 359.72768 * 14 13 4 22 22 H 0.97003 * 120.00184 * 180.02562 * 8 7 5 23 23 H 1.07994 * 119.82296 * 0.02562 * 15 14 13 24 24 H 1.09002 * 109.46800 * 210.00362 * 17 16 15 25 25 H 1.08997 * 109.46616 * 329.99854 * 17 16 15 26 26 H 0.96696 * 113.99988 * 179.97438 * 18 17 16 27 27 H 1.08002 * 119.76176 * 179.97438 * 19 16 15 28 28 H 1.07997 * 119.74238 * 179.97438 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.3294 0.9138 -0.7177 5 6 2.8057 1.9276 -1.5141 6 1 1.7420 1.9777 -1.6945 7 6 3.6615 2.8871 -2.0840 8 7 4.9551 2.7546 -1.9745 9 14 2.9466 4.3510 -2.9979 10 1 2.8436 5.5091 -2.0740 11 1 3.8316 4.7037 -4.1370 12 1 1.5963 4.0040 -3.5092 13 16 5.0395 0.6145 -0.4827 14 6 4.7400 -0.7473 0.5886 15 6 5.6473 -1.5845 1.2475 16 6 5.1942 -2.6051 2.0509 17 6 6.1806 -3.5000 2.7560 18 8 6.4919 -2.9494 4.0373 19 6 3.8307 -2.8136 2.2145 20 6 2.9294 -2.0126 1.5840 21 6 3.3667 -0.9516 0.7575 22 1 5.5454 3.4166 -2.3673 23 1 6.7088 -1.4280 1.1252 24 1 5.7457 -4.4915 2.8825 25 1 7.0914 -3.5758 2.1621 26 1 7.1225 -3.4748 4.5485 27 1 3.4833 -3.6174 2.8467 28 1 1.8720 -2.1857 1.7193 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396224947.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:09 Heat of formation + Delta-G solvation = -16.634038 kcal Electronic energy + Delta-G solvation = -15672.822577 eV Core-core repulsion = 12971.563282 eV Total energy + Delta-G solvation = -2701.259295 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.65006 -36.62038 -35.60357 -34.69500 -33.11878 -30.27629 -29.82558 -27.08432 -24.31886 -23.05488 -21.26294 -20.34826 -18.41973 -17.20966 -16.44671 -15.95265 -15.57527 -14.81048 -14.40437 -13.94828 -13.30752 -13.04255 -12.96591 -12.78481 -12.55270 -12.03226 -11.86064 -11.77898 -11.64987 -11.45207 -11.04844 -10.68941 -10.49224 -10.30070 -10.19818 -9.84312 -9.50457 -9.35441 -8.57587 -7.73562 -7.54122 -6.58578 -5.12057 1.84622 2.18475 2.50187 2.70271 2.78789 2.92983 2.98320 3.34758 3.51185 4.13257 4.16630 4.28069 4.85634 5.12136 5.36729 5.39759 5.64187 5.70036 5.73675 5.88992 6.25305 6.31086 6.40602 6.66971 6.84446 6.98756 7.21443 7.27547 7.38794 7.53319 7.73181 7.81060 7.88614 8.02217 9.02480 9.25247 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.028075 B = 0.006308 C = 0.005247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.089431 B = 4437.702995 C = 5335.137959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C 0.323 3.677 3 C -0.301 4.301 4 C 0.081 3.919 5 C -0.350 4.350 6 H 0.106 0.894 7 C 0.055 3.945 8 N -0.747 5.747 9 Si 0.941 3.059 10 H -0.258 1.258 11 H -0.266 1.266 12 H -0.252 1.252 13 S 0.163 5.837 14 C -0.245 4.245 15 C -0.034 4.034 16 C -0.157 4.157 17 C 0.131 3.869 18 O -0.569 6.569 19 C -0.086 4.086 20 C -0.144 4.144 21 C 0.049 3.951 22 H 0.310 0.690 23 H 0.109 0.891 24 H 0.045 0.955 25 H 0.046 0.954 26 H 0.369 0.631 27 H 0.107 0.893 28 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.207 -3.193 1.493 8.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.215 5.215 2 C 0.015 3.985 3 C -0.313 4.313 4 C -0.042 4.042 5 C -0.384 4.384 6 H 0.124 0.876 7 C -0.172 4.172 8 N -0.370 5.370 9 Si 0.763 3.237 10 H -0.183 1.183 11 H -0.190 1.190 12 H -0.175 1.175 13 S 0.424 5.576 14 C -0.359 4.359 15 C -0.057 4.057 16 C -0.160 4.160 17 C 0.054 3.946 18 O -0.374 6.374 19 C -0.106 4.106 20 C -0.164 4.164 21 C 0.040 3.960 22 H 0.124 0.876 23 H 0.127 0.873 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.215 0.785 27 H 0.125 0.875 28 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.545 -1.975 0.695 6.872 hybrid contribution -0.657 -0.564 0.396 0.952 sum 5.889 -2.540 1.091 6.505 Atomic orbital electron populations 1.81016 1.12419 1.13055 1.14961 1.25047 0.91769 0.90960 0.90742 1.15356 0.84168 1.10709 1.21079 1.21298 0.95308 0.93940 0.93622 1.19565 0.96856 1.03576 1.18365 0.87640 1.26540 0.94407 1.00922 0.95286 1.68519 1.04333 1.33686 1.30504 0.85663 0.80554 0.78541 0.78950 1.18261 1.19011 1.17499 1.84821 1.03707 1.23690 1.45377 1.23514 0.96146 1.06456 1.09754 1.20126 0.97368 0.92952 0.95205 1.18997 0.93417 1.00604 1.02941 1.20840 0.95993 0.94321 0.83446 1.86660 1.66816 1.53585 1.30353 1.20190 0.92380 0.99080 0.98952 1.20473 0.98575 0.96715 1.00623 1.18613 0.91243 0.92736 0.93419 0.87616 0.87309 0.93672 0.93621 0.78509 0.87458 0.87599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -13.50 18.54 41.83 0.78 -12.72 15 2 C 0.32 8.08 14.56 -22.48 -0.33 7.75 15 3 C -0.30 -7.39 5.95 -104.82 -0.62 -8.02 15 4 C 0.08 1.95 6.12 -39.01 -0.24 1.71 15 5 C -0.35 -8.09 8.90 -38.34 -0.34 -8.44 15 6 H 0.11 2.45 7.40 -52.49 -0.39 2.06 15 7 C 0.05 1.13 5.50 -17.22 -0.09 1.04 15 8 N -0.75 -15.37 10.58 55.59 0.59 -14.78 15 9 Si 0.94 15.62 29.57 -169.99 -5.03 10.59 15 10 H -0.26 -4.26 7.11 56.52 0.40 -3.86 15 11 H -0.27 -4.19 7.11 56.52 0.40 -3.79 15 12 H -0.25 -4.28 7.11 56.52 0.40 -3.88 15 13 S 0.16 3.61 20.04 -107.50 -2.15 1.45 15 14 C -0.24 -5.40 6.43 -38.34 -0.25 -5.64 15 15 C -0.03 -0.66 9.71 -39.19 -0.38 -1.05 15 16 C -0.16 -2.87 5.51 -104.62 -0.58 -3.44 15 17 C 0.13 1.84 7.16 36.01 0.26 2.10 15 18 O -0.57 -8.11 13.64 -35.23 -0.48 -8.59 15 19 C -0.09 -1.60 9.61 -40.12 -0.39 -1.99 15 20 C -0.14 -3.04 9.79 -39.15 -0.38 -3.42 15 21 C 0.05 1.13 6.01 -105.16 -0.63 0.50 15 22 H 0.31 5.57 8.29 -40.82 -0.34 5.23 15 23 H 0.11 1.89 8.06 -52.49 -0.42 1.47 15 24 H 0.05 0.54 8.09 -51.93 -0.42 0.12 15 25 H 0.05 0.56 8.08 -51.93 -0.42 0.14 15 26 H 0.37 3.11 9.12 45.56 0.42 3.52 15 27 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.11 2.16 8.03 -52.49 -0.42 1.74 15 LS Contribution 274.06 15.07 4.13 4.13 Total: -1.00 -27.42 274.06 -7.35 -34.77 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -1.21 Total: 4.04 kcal Atomic # 6 Polarization: -14.93 SS G_CDS: -3.97 Total: -18.90 kcal Atomic # 7 Polarization: -28.86 SS G_CDS: 1.36 Total: -27.50 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.48 Total: -8.59 kcal Atomic # 14 Polarization: 15.62 SS G_CDS: -5.03 Total: 10.59 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -2.15 Total: 1.45 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.42 -7.35 -34.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224947.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.141 kcal (2) G-P(sol) polarization free energy of solvation -27.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds