Wall clock time and date at job start Mon Mar 30 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39030 * 120.04117 * 133.54654 * 3 2 1 5 5 C 1.40159 * 120.05325 * 180.02562 * 4 3 2 6 6 C 1.46705 * 129.48469 * 180.32688 * 5 4 3 7 7 C 1.40748 * 123.30088 * 359.95415 * 6 5 4 8 8 H 1.07999 * 120.00039 * 22.65101 * 7 6 5 9 9 C 1.39762 * 120.00247 * 202.64189 * 7 6 5 10 10 N 1.31045 * 119.99389 * 11.10188 * 9 7 6 11 11 Si 1.86798 * 120.00168 * 191.09169 * 9 7 6 12 12 H 1.48497 * 109.47293 * 60.00583 * 11 9 7 13 13 H 1.48501 * 109.47075 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47094 * 300.00312 * 11 9 7 15 15 C 1.36412 * 113.39526 * 180.15257 * 6 5 4 16 16 S 1.69953 * 112.02510 * 359.53645 * 15 6 5 17 17 C 1.39632 * 119.31625 * 359.97438 * 5 4 3 18 18 C 1.40047 * 119.81771 * 0.06177 * 17 5 4 19 19 C 1.36211 * 120.71720 * 359.88051 * 18 17 5 20 20 C 1.50700 * 119.91121 * 180.02562 * 19 18 17 21 21 O 1.42899 * 109.46958 * 0.08373 * 20 19 18 22 22 H 1.08000 * 119.97603 * 0.04335 * 4 3 2 23 23 H 0.96999 * 119.99667 * 180.02562 * 10 9 7 24 24 H 1.08001 * 123.98412 * 179.80582 * 15 6 5 25 25 H 1.07999 * 119.64125 * 179.97438 * 18 17 5 26 26 H 1.08999 * 109.46968 * 120.08204 * 20 19 18 27 27 H 1.08998 * 109.47423 * 240.08132 * 20 19 18 28 28 H 0.96703 * 113.99509 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2636 0.8301 -0.8723 5 6 4.6652 0.8306 -0.8729 6 6 5.5975 1.6158 -1.6894 7 6 5.1802 2.5470 -2.6588 8 1 4.1956 2.9863 -2.5970 9 6 6.0402 2.9032 -3.7014 10 7 7.1399 2.2205 -3.9057 11 14 5.6217 4.3522 -4.8035 12 1 5.5227 5.5859 -3.9829 13 1 6.6864 4.5208 -5.8250 14 1 4.3233 4.1014 -5.4792 15 6 6.9084 1.3517 -1.4198 16 16 7.0850 0.1868 -0.1949 17 6 5.3495 -0.0078 0.0094 18 6 4.6316 -0.8370 0.8803 19 6 3.2695 -0.8341 0.8791 20 6 2.5154 -1.7334 1.8244 21 8 3.4434 -2.4819 2.6121 22 1 2.7236 1.4749 -1.5499 23 1 7.7369 2.4680 -4.6291 24 1 7.7362 1.8299 -1.9221 25 1 5.1638 -1.4846 1.5613 26 1 1.8884 -1.1281 2.4792 27 1 1.8889 -2.4180 1.2527 28 1 3.0270 -3.0837 3.2442 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396224953.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:27 Heat of formation + Delta-G solvation = -9.207436 kcal Electronic energy + Delta-G solvation = -15787.890978 eV Core-core repulsion = 13086.953724 eV Total energy + Delta-G solvation = -2700.937254 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.77638 -38.08898 -37.58259 -36.41283 -34.23713 -32.16525 -30.94824 -28.11343 -26.79894 -24.68622 -22.90002 -21.90156 -19.45201 -18.51464 -18.14179 -17.97169 -16.86912 -16.13443 -16.06811 -15.67004 -15.12596 -14.81715 -14.68641 -14.46079 -14.07788 -13.91858 -13.64316 -13.26767 -13.17474 -12.83406 -12.51486 -12.28683 -12.17402 -11.84411 -11.65841 -11.25342 -11.09984 -10.92683 -10.25033 -9.12945 -8.61785 -8.48589 -6.28264 -0.27811 0.17170 1.07548 1.31532 1.40548 1.50804 1.58344 1.71124 1.91848 2.10430 2.24100 2.81118 2.86218 3.22957 3.36292 3.84533 4.02816 4.32264 4.41294 4.52248 4.56195 4.68052 4.99239 5.15089 5.24221 5.29333 5.41150 5.67188 5.84519 5.99944 6.41594 6.50633 6.83208 6.94572 6.97409 8.40387 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023061 B = 0.006679 C = 0.005240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.896612 B = 4191.309031 C = 5342.592803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.289 3.711 3 C -0.052 4.052 4 C -0.015 4.015 5 C -0.100 4.100 6 C 0.061 3.939 7 C -0.466 4.466 8 H 0.081 0.919 9 C 0.028 3.972 10 N -0.829 5.829 11 Si 0.982 3.018 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.260 1.260 15 C -0.388 4.388 16 S 0.097 5.903 17 C -0.132 4.132 18 C -0.070 4.070 19 C -0.047 4.047 20 C 0.125 3.875 21 O -0.578 6.578 22 H 0.135 0.865 23 H 0.284 0.716 24 H 0.140 0.860 25 H 0.150 0.850 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 -5.428 8.003 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.025 4.025 3 C -0.059 4.059 4 C -0.037 4.037 5 C -0.111 4.111 6 C 0.052 3.948 7 C -0.499 4.499 8 H 0.099 0.901 9 C -0.186 4.186 10 N -0.457 5.457 11 Si 0.804 3.196 12 H -0.186 1.186 13 H -0.197 1.197 14 H -0.184 1.184 15 C -0.524 4.524 16 S 0.363 5.637 17 C -0.249 4.249 18 C -0.093 4.093 19 C -0.052 4.052 20 C 0.048 3.952 21 O -0.387 6.387 22 H 0.153 0.847 23 H 0.094 0.906 24 H 0.158 0.842 25 H 0.167 0.833 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -4.333 -5.687 8.092 10.798 hybrid contribution -0.818 1.196 -1.375 1.998 sum -5.151 -4.491 6.717 9.582 Atomic orbital electron populations 1.81208 1.12220 1.09864 1.09720 1.25433 0.92118 0.92491 0.92498 1.15250 0.83794 1.04029 1.02864 1.20863 0.91776 0.95566 0.95540 1.19618 0.93903 0.98800 0.98760 1.17664 0.89970 0.94054 0.93120 1.19278 1.01770 1.21419 1.07431 0.90110 1.26651 0.94175 0.98948 0.98811 1.69915 1.11318 1.36020 1.28405 0.85233 0.78967 0.77995 0.77446 1.18587 1.19713 1.18412 1.24374 1.00849 1.14949 1.12209 1.81590 1.00553 1.43303 1.38263 1.23287 0.98994 1.01496 1.01091 1.19984 0.92998 0.98219 0.98115 1.19275 0.93218 0.96529 0.96216 1.20797 0.89691 0.92838 0.91916 1.86408 1.36516 1.59894 1.55908 0.84726 0.90595 0.84225 0.83265 0.90715 0.90843 0.74426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.45 18.54 19.00 0.35 -14.10 15 2 C 0.29 8.69 14.36 88.33 1.27 9.96 15 3 C -0.05 -1.63 5.72 -21.40 -0.12 -1.76 15 4 C -0.01 -0.56 9.57 22.93 0.22 -0.34 15 5 C -0.10 -4.45 6.02 -20.26 -0.12 -4.57 15 6 C 0.06 3.12 5.69 -20.88 -0.12 3.00 15 7 C -0.47 -24.12 9.07 23.25 0.21 -23.91 15 8 H 0.08 3.92 7.70 -2.91 -0.02 3.90 15 9 C 0.03 1.37 5.36 85.18 0.46 1.83 15 10 N -0.83 -43.28 10.79 21.81 0.24 -43.04 15 11 Si 0.98 37.99 29.57 68.60 2.03 40.02 15 12 H -0.26 -9.89 7.11 99.48 0.71 -9.18 15 13 H -0.27 -10.15 7.11 99.48 0.71 -9.44 15 14 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 15 C -0.39 -19.90 9.50 67.39 0.64 -19.26 15 16 S 0.10 4.08 22.96 -56.49 -1.30 2.78 15 17 C -0.13 -5.34 6.45 23.05 0.15 -5.19 15 18 C -0.07 -2.32 9.35 22.24 0.21 -2.11 15 19 C -0.05 -1.37 5.87 -19.89 -0.12 -1.49 15 20 C 0.13 2.62 6.44 71.24 0.46 3.08 15 21 O -0.58 -10.99 12.09 -148.98 -1.80 -12.79 15 22 H 0.13 4.85 7.89 -2.91 -0.02 4.83 15 23 H 0.28 13.56 8.30 -92.71 -0.77 12.79 15 24 H 0.14 7.77 6.26 -2.91 -0.02 7.75 15 25 H 0.15 4.50 6.92 -2.91 -0.02 4.48 15 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 15 28 H 0.40 3.28 9.12 -74.05 -0.68 2.60 15 Total: -1.00 -59.66 271.14 3.20 -56.46 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.55 Total: 11.43 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 3.13 Total: -40.76 kcal Atomic # 7 Polarization: -57.73 SS G_CDS: 0.59 Total: -57.14 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: -1.80 Total: -12.79 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 2.03 Total: 40.02 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.30 Total: 2.78 kcal Total: -59.66 3.20 -56.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396224953.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.251 kcal (2) G-P(sol) polarization free energy of solvation -59.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds