Wall clock time and date at job start Mon Mar 30 2020 06:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.33812 * 122.86938 * 340.88982 * 3 2 1 5 5 S 1.75201 * 111.34712 * 180.02562 * 4 3 2 6 6 C 1.75980 * 92.52778 * 359.97438 * 5 4 3 7 7 C 1.40541 * 129.93430 * 180.02562 * 6 5 4 8 8 C 1.35689 * 120.86993 * 180.02562 * 7 6 5 9 9 C 1.41116 * 120.04098 * 359.97438 * 8 7 6 10 10 C 1.41241 * 120.10743 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00430 * 205.64770 * 10 9 8 12 12 C 1.39883 * 119.99950 * 25.63703 * 10 9 8 13 13 N 1.30883 * 120.00141 * 15.37333 * 12 10 9 14 14 Si 1.86804 * 120.00119 * 195.37219 * 12 10 9 15 15 H 1.48495 * 109.47020 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46990 * 120.00194 * 14 12 10 17 17 H 1.48496 * 109.47372 * 240.00014 * 14 12 10 18 18 C 1.39999 * 119.78944 * 0.02562 * 9 8 7 19 19 C 1.50700 * 119.97554 * 180.02562 * 18 9 8 20 20 O 1.42899 * 109.46784 * 270.01789 * 19 18 9 21 21 C 1.39840 * 109.97410 * 0.02562 * 6 5 4 22 22 H 1.08001 * 124.32802 * 0.05643 * 4 3 2 23 23 H 1.07991 * 119.56949 * 359.97438 * 7 6 5 24 24 H 1.07995 * 119.97779 * 179.69901 * 8 7 6 25 25 H 0.97003 * 120.00102 * 180.02562 * 13 12 10 26 26 H 1.08994 * 109.47541 * 30.01929 * 19 18 9 27 27 H 1.09001 * 109.47009 * 150.01836 * 19 18 9 28 28 H 0.96705 * 113.99899 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2947 -1.0610 0.3679 5 16 5.0112 -0.7293 0.2541 6 6 4.7354 0.9128 -0.3154 7 6 5.6583 1.9142 -0.6625 8 6 5.2371 3.1331 -1.0847 9 6 3.8566 3.4092 -1.1807 10 6 3.4166 4.6776 -1.6195 11 1 2.4470 5.0467 -1.3191 12 6 4.2367 5.4561 -2.4430 13 7 5.2600 4.9113 -3.0505 14 14 3.8715 7.2732 -2.6757 15 1 2.6692 7.6415 -1.8858 16 1 5.0325 8.0748 -2.2120 17 1 3.6229 7.5480 -4.1137 18 6 2.9244 2.4223 -0.8387 19 6 1.4491 2.7125 -0.9402 20 8 0.9822 3.2465 0.3004 21 6 3.3624 1.1638 -0.4027 22 1 2.8765 -2.0022 0.6931 23 1 6.7166 1.7114 -0.5916 24 1 5.9589 3.8937 -1.3432 25 1 5.8290 5.4512 -3.6213 26 1 1.2751 3.4368 -1.7359 27 1 0.9120 1.7908 -1.1641 28 1 0.0384 3.4568 0.3078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396225293.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:17 Heat of formation + Delta-G solvation = -1.659246 kcal Electronic energy + Delta-G solvation = -16304.736378 eV Core-core repulsion = 13604.126439 eV Total energy + Delta-G solvation = -2700.609939 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.42674 -37.96343 -37.41830 -36.30587 -34.69502 -32.43249 -30.44786 -27.78798 -26.22648 -25.27902 -22.62133 -22.03046 -19.42711 -18.29534 -18.05327 -17.91363 -17.20237 -16.28007 -16.03885 -15.31161 -15.14045 -14.74155 -14.61688 -14.24143 -14.09301 -13.78700 -13.58215 -13.16931 -13.08442 -12.80073 -12.69955 -12.46536 -11.94175 -11.88389 -11.64459 -11.14563 -11.03672 -10.74621 -10.07896 -9.21402 -8.79489 -8.44415 -6.40119 -0.20855 0.71833 0.76134 1.07478 1.12974 1.39161 1.45032 1.53306 1.67322 2.18234 2.38274 2.65402 3.19572 3.41900 3.84294 3.93857 4.25770 4.34869 4.55431 4.68383 4.70232 4.86764 5.00331 5.13420 5.26419 5.58134 5.64750 5.74404 5.98123 6.21505 6.47337 6.51883 6.83124 6.85235 6.94028 8.22969 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.007787 C = 0.006033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.147537 B = 3594.874506 C = 4639.962845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.301 3.699 3 C -0.075 4.075 4 C -0.117 4.117 5 S 0.159 5.841 6 C -0.261 4.261 7 C -0.071 4.071 8 C -0.141 4.141 9 C 0.107 3.893 10 C -0.472 4.472 11 H 0.076 0.924 12 C 0.041 3.959 13 N -0.811 5.811 14 Si 0.980 3.020 15 H -0.263 1.263 16 H -0.260 1.260 17 H -0.264 1.264 18 C -0.228 4.228 19 C 0.146 3.854 20 O -0.580 6.580 21 C -0.008 4.008 22 H 0.210 0.790 23 H 0.126 0.874 24 H 0.121 0.879 25 H 0.294 0.706 26 H 0.041 0.959 27 H 0.033 0.967 28 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -5.741 2.739 6.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.014 4.014 3 C -0.094 4.094 4 C -0.256 4.256 5 S 0.423 5.577 6 C -0.376 4.376 7 C -0.092 4.092 8 C -0.162 4.162 9 C 0.104 3.896 10 C -0.500 4.500 11 H 0.095 0.905 12 C -0.176 4.176 13 N -0.436 5.436 14 Si 0.801 3.199 15 H -0.187 1.187 16 H -0.185 1.185 17 H -0.189 1.189 18 C -0.233 4.233 19 C 0.069 3.931 20 O -0.386 6.386 21 C -0.015 4.015 22 H 0.227 0.773 23 H 0.144 0.856 24 H 0.139 0.861 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.840 -6.666 3.027 7.549 hybrid contribution -1.532 1.931 -0.820 2.598 sum 0.308 -4.735 2.207 5.233 Atomic orbital electron populations 1.81119 1.12215 1.09437 1.11049 1.25151 0.92152 0.91861 0.92279 1.15872 0.84903 0.95972 1.12697 1.25811 0.97874 1.01622 1.00279 1.83167 1.01139 1.05154 1.68229 1.22192 0.95471 1.00686 1.19212 1.20102 0.97819 0.92142 0.99170 1.21141 0.96106 0.96931 1.01985 1.17645 0.91761 0.92132 0.88097 1.19831 1.03381 1.00674 1.26146 0.90546 1.26726 0.93355 1.04795 0.92765 1.69829 1.13801 1.39338 1.20653 0.85177 0.79658 0.76143 0.78955 1.18726 1.18458 1.18894 1.19410 0.93599 0.93152 1.17127 1.20561 0.91682 0.95377 0.85441 1.86606 1.29438 1.86140 1.36442 1.18545 0.91426 0.92777 0.98762 0.77300 0.85603 0.86104 0.89510 0.94090 0.94927 0.77554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.52 18.02 19.00 0.34 -17.18 15 2 C 0.30 11.12 12.58 88.33 1.11 12.23 15 3 C -0.08 -2.71 5.82 -20.88 -0.12 -2.84 15 4 C -0.12 -3.16 10.83 66.81 0.72 -2.44 15 5 S 0.16 4.46 23.21 -56.49 -1.31 3.15 15 6 C -0.26 -10.46 6.48 23.22 0.15 -10.31 15 7 C -0.07 -2.99 9.99 22.24 0.22 -2.77 15 8 C -0.14 -6.85 8.59 22.39 0.19 -6.65 15 9 C 0.11 5.56 5.55 -21.41 -0.12 5.44 15 10 C -0.47 -24.29 8.10 23.41 0.19 -24.10 15 11 H 0.08 3.95 6.82 -2.91 -0.02 3.93 15 12 C 0.04 1.91 5.18 85.23 0.44 2.35 15 13 N -0.81 -38.96 10.88 21.82 0.24 -38.72 15 14 Si 0.98 36.29 29.59 68.60 2.03 38.32 15 15 H -0.26 -9.88 7.11 99.48 0.71 -9.17 15 16 H -0.26 -9.17 7.11 99.48 0.71 -8.47 15 17 H -0.26 -9.36 7.11 99.48 0.71 -8.65 15 18 C -0.23 -11.17 5.62 -18.96 -0.11 -11.28 15 19 C 0.15 6.57 5.84 71.24 0.42 6.99 15 20 O -0.58 -24.90 13.64 -148.98 -2.03 -26.93 15 21 C -0.01 -0.35 5.97 -20.26 -0.12 -0.47 15 22 H 0.21 3.71 8.06 -2.91 -0.02 3.69 15 23 H 0.13 4.51 8.06 -2.92 -0.02 4.48 15 24 H 0.12 6.00 6.14 -2.91 -0.02 5.98 15 25 H 0.29 12.60 8.30 -92.71 -0.77 11.83 15 26 H 0.04 1.88 6.74 -2.39 -0.02 1.86 15 27 H 0.03 1.41 5.03 -2.39 -0.01 1.40 15 28 H 0.38 12.43 9.12 -74.05 -0.68 11.75 15 Total: -1.00 -59.37 265.47 2.81 -56.57 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: 0.56 Total: 18.63 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 2.98 Total: -33.84 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: 0.58 Total: -55.90 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -2.03 Total: -26.93 kcal Atomic # 14 Polarization: 36.29 SS G_CDS: 2.03 Total: 38.32 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.31 Total: 3.15 kcal Total: -59.37 2.81 -56.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396225293.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.907 kcal (2) G-P(sol) polarization free energy of solvation -59.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds