Wall clock time and date at job start Mon Mar 30 2020 06:15:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13598 * 1
3 3 C 1.43202 * 179.97438 * 2 1
4 4 C 1.39549 * 119.74028 * 159.52327 * 3 2 1
5 5 C 1.36219 * 120.73739 * 180.02562 * 4 3 2
6 6 C 1.40728 * 120.22662 * 359.97438 * 5 4 3
7 7 C 1.40516 * 119.96051 * 180.02562 * 6 5 4
8 8 H 1.07998 * 120.00172 * 205.26462 * 7 6 5
9 9 C 1.40227 * 119.99832 * 25.26773 * 7 6 5
10 10 N 1.30678 * 120.00428 * 17.93741 * 9 7 6
11 11 Si 1.86798 * 119.99736 * 197.94131 * 9 7 6
12 12 H 1.48503 * 109.47318 * 89.99834 * 11 9 7
13 13 H 1.48509 * 109.47147 * 209.99851 * 11 9 7
14 14 H 1.48503 * 109.47169 * 329.99659 * 11 9 7
15 15 C 1.42264 * 120.08040 * 359.97438 * 6 5 4
16 16 S 1.75897 * 130.56327 * 179.97438 * 15 6 5
17 17 C 1.75331 * 92.13280 * 179.83948 * 16 15 6
18 18 C 1.32110 * 111.22952 * 0.33716 * 17 16 15
19 19 C 1.50705 * 122.54642 * 179.86296 * 18 17 16
20 20 O 1.42894 * 109.47371 * 359.71391 * 19 18 17
21 21 C 1.39258 * 119.67410 * 0.02562 * 15 6 5
22 22 H 1.08001 * 119.63285 * 0.02562 * 4 3 2
23 23 H 1.07998 * 119.88541 * 179.97438 * 5 4 3
24 24 H 0.96997 * 120.00127 * 180.02562 * 10 9 7
25 25 H 1.08001 * 124.38619 * 180.24289 * 17 16 15
26 26 H 1.08998 * 109.47034 * 239.70920 * 19 18 17
27 27 H 1.09001 * 109.46844 * 119.71811 * 19 18 17
28 28 H 0.96698 * 114.00138 * 179.97438 * 20 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1360 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2598 1.1361 -0.4239
5 6 4.6217 1.1587 -0.4327
6 6 5.3517 0.0316 -0.0117
7 6 6.7565 0.0613 -0.0225
8 1 7.3155 -0.8591 -0.1048
9 6 7.4327 1.2860 0.0736
10 7 6.8079 2.3443 0.5179
11 14 9.2266 1.4047 -0.4336
12 1 9.3116 1.7542 -1.8744
13 1 9.9001 2.4555 0.3713
14 1 9.8943 0.0988 -0.2007
15 6 4.6692 -1.1373 0.4259
16 16 5.2928 -2.6782 1.0011
17 6 3.6776 -3.3150 1.2460
18 6 2.7578 -2.4284 0.9095
19 6 1.2814 -2.7115 1.0162
20 8 1.0852 -4.0374 1.5116
21 6 3.2768 -1.1601 0.4347
22 1 2.7092 2.0066 -0.7486
23 1 5.1431 2.0446 -0.7638
24 1 7.2756 3.1915 0.5840
25 1 3.4625 -4.3044 1.6217
26 1 0.8218 -2.6195 0.0322
27 1 0.8229 -1.9967 1.6995
28 1 0.1562 -4.2884 1.6064
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396226698.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:15:17
Heat of formation + Delta-G solvation = 4.616798 kcal
Electronic energy + Delta-G solvation = -16027.872398 eV
Core-core repulsion = 13327.534608 eV
Total energy + Delta-G solvation = -2700.337790 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 259.041 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-38.73039 -36.84251 -35.58700 -34.82139 -33.33022 -30.50136 -28.52860 -26.97152
-25.66675 -22.32895 -21.59541 -19.22028 -18.37672 -17.58773 -16.86138 -15.78286
-14.89258 -14.85062 -14.74008 -14.21825 -13.58588 -13.45231 -13.04347 -12.65439
-12.22109 -12.13646 -11.88947 -11.75431 -11.51921 -11.39103 -10.97943 -10.87027
-10.38245 -10.34930 -10.27662 -9.81496 -9.68070 -9.50144 -8.35346 -7.59645
-7.32080 -6.91331 -4.81013 1.53853 2.29172 2.50641 2.80557 2.85297
2.87873 3.00248 3.11907 3.57742 3.62720 3.77870 4.39984 4.44851
5.18062 5.21608 5.46202 5.57478 5.77620 5.79779 6.06340 6.34340
6.48381 6.59859 6.72328 6.90899 7.05437 7.19127 7.43849 7.59782
7.70842 7.77333 8.09480 8.26269 8.35157 8.53095 9.60186
Molecular weight = 259.04amu
Principal moments of inertia in cm(-1)
A = 0.025905 B = 0.007179 C = 0.005720
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1080.619939 B = 3899.399949 C = 4893.689543
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.509 5.509
2 C 0.290 3.710
3 C -0.180 4.180
4 C -0.024 4.024
5 C -0.182 4.182
6 C 0.165 3.835
7 C -0.419 4.419
8 H 0.091 0.909
9 C 0.074 3.926
10 N -0.751 5.751
11 Si 0.918 3.082
12 H -0.261 1.261
13 H -0.272 1.272
14 H -0.256 1.256
15 C -0.217 4.217
16 S 0.063 5.937
17 C -0.175 4.175
18 C -0.117 4.117
19 C 0.142 3.858
20 O -0.572 6.572
21 C 0.020 3.980
22 H 0.102 0.898
23 H 0.130 0.870
24 H 0.293 0.707
25 H 0.160 0.840
26 H 0.054 0.946
27 H 0.054 0.946
28 H 0.378 0.622
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.778 -3.878 -0.053 3.955
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.189 5.189
2 C -0.019 4.019
3 C -0.189 4.189
4 C -0.045 4.045
5 C -0.205 4.205
6 C 0.159 3.841
7 C -0.446 4.446
8 H 0.109 0.891
9 C -0.151 4.151
10 N -0.372 5.372
11 Si 0.740 3.260
12 H -0.185 1.185
13 H -0.197 1.197
14 H -0.179 1.179
15 C -0.332 4.332
16 S 0.328 5.672
17 C -0.310 4.310
18 C -0.131 4.131
19 C 0.062 3.938
20 O -0.377 6.377
21 C 0.010 3.990
22 H 0.121 0.879
23 H 0.148 0.852
24 H 0.105 0.895
25 H 0.177 0.823
26 H 0.072 0.928
27 H 0.072 0.928
28 H 0.224 0.776
Dipole moment (debyes) X Y Z Total
from point charges 1.198 -4.257 0.265 4.431
hybrid contribution -0.852 0.800 -0.308 1.209
sum 0.345 -3.458 -0.043 3.475
Atomic orbital electron populations
1.81073 1.12464 1.10166 1.15208 1.26041 0.92910 0.91744 0.91210
1.15112 0.82592 0.96798 1.24415 1.20161 0.94601 0.94276 0.95479
1.20700 0.91926 1.00170 1.07717 1.17088 0.92926 0.88278 0.85852
1.19867 0.91599 0.94296 1.38804 0.89056 1.26161 1.02168 0.94761
0.91970 1.69736 1.39471 1.01681 1.26300 0.86111 0.80018 0.79868
0.79955 1.18528 1.19662 1.17906 1.22380 0.94438 0.99965 1.16436
1.83569 1.06178 1.07952 1.69545 1.24804 0.96035 1.03317 1.06823
1.19421 0.94431 0.93972 1.05250 1.20581 0.92663 0.83026 0.97538
1.86396 1.30788 1.31864 1.88619 1.18319 0.91713 0.91074 0.97880
0.87947 0.85222 0.89519 0.82256 0.92831 0.92826 0.77597
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.51 -10.76 18.51 41.84 0.77 -9.99 15
2 C 0.29 6.08 12.56 -22.47 -0.28 5.80 15
3 C -0.18 -3.90 5.82 -105.73 -0.62 -4.51 15
4 C -0.02 -0.50 9.61 -39.82 -0.38 -0.88 15
5 C -0.18 -4.11 8.59 -39.37 -0.34 -4.44 15
6 C 0.17 3.87 5.59 -106.55 -0.60 3.27 15
7 C -0.42 -9.50 8.81 -37.98 -0.33 -9.83 15
8 H 0.09 2.00 7.74 -52.49 -0.41 1.60 15
9 C 0.07 1.56 5.11 -17.30 -0.09 1.47 15
10 N -0.75 -16.32 10.98 55.56 0.61 -15.71 15
11 Si 0.92 15.80 29.60 -169.99 -5.03 10.76 15
12 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15
13 H -0.27 -4.59 7.11 56.52 0.40 -4.19 15
14 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15
15 C -0.22 -4.90 6.36 -37.66 -0.24 -5.14 15
16 S 0.06 1.23 22.82 -107.50 -2.45 -1.22 15
17 C -0.18 -3.32 10.29 28.81 0.30 -3.02 15
18 C -0.12 -2.34 5.97 -103.85 -0.62 -2.96 15
19 C 0.14 2.50 5.90 36.01 0.21 2.71 15
20 O -0.57 -8.70 12.49 -35.23 -0.44 -9.14 15
21 C 0.02 0.45 5.99 -105.07 -0.63 -0.18 15
22 H 0.10 1.92 8.06 -52.49 -0.42 1.50 15
23 H 0.13 2.91 6.16 -52.49 -0.32 2.59 15
24 H 0.29 5.68 8.29 -40.82 -0.34 5.34 15
25 H 0.16 2.72 7.42 -52.49 -0.39 2.33 15
26 H 0.05 0.96 7.64 -51.93 -0.40 0.56 15
27 H 0.05 0.97 7.65 -51.93 -0.40 0.57 15
28 H 0.38 3.80 9.12 45.56 0.42 4.22 15
LS Contribution 268.39 15.07 4.04 4.04
Total: -1.00 -25.34 268.39 -7.17 -32.51
By element:
Atomic # 1 Polarization: 7.52 SS G_CDS: -1.05 Total: 6.46 kcal
Atomic # 6 Polarization: -14.10 SS G_CDS: -3.62 Total: -17.72 kcal
Atomic # 7 Polarization: -27.08 SS G_CDS: 1.38 Total: -25.70 kcal
Atomic # 8 Polarization: -8.70 SS G_CDS: -0.44 Total: -9.14 kcal
Atomic # 14 Polarization: 15.80 SS G_CDS: -5.03 Total: 10.76 kcal
Atomic # 16 Polarization: 1.23 SS G_CDS: -2.45 Total: -1.22 kcal
Total LS contribution 4.04 Total: 4.04 kcal
Total: -25.34 -7.17 -32.51 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396226698.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 37.125 kcal
(2) G-P(sol) polarization free energy of solvation -25.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.508 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.617 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds