Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39549 * 119.74028 * 159.52327 * 3 2 1 5 5 C 1.36219 * 120.73739 * 180.02562 * 4 3 2 6 6 C 1.40728 * 120.22662 * 359.97438 * 5 4 3 7 7 C 1.40516 * 119.96051 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00172 * 205.26462 * 7 6 5 9 9 C 1.40227 * 119.99832 * 25.26773 * 7 6 5 10 10 N 1.30678 * 120.00428 * 17.93741 * 9 7 6 11 11 Si 1.86798 * 119.99736 * 197.94131 * 9 7 6 12 12 H 1.48503 * 109.47318 * 89.99834 * 11 9 7 13 13 H 1.48509 * 109.47147 * 209.99851 * 11 9 7 14 14 H 1.48503 * 109.47169 * 329.99659 * 11 9 7 15 15 C 1.42264 * 120.08040 * 359.97438 * 6 5 4 16 16 S 1.75897 * 130.56327 * 179.97438 * 15 6 5 17 17 C 1.75331 * 92.13280 * 179.83948 * 16 15 6 18 18 C 1.32110 * 111.22952 * 0.33716 * 17 16 15 19 19 C 1.50705 * 122.54642 * 179.86296 * 18 17 16 20 20 O 1.42894 * 109.47371 * 359.71391 * 19 18 17 21 21 C 1.39258 * 119.67410 * 0.02562 * 15 6 5 22 22 H 1.08001 * 119.63285 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.88541 * 179.97438 * 5 4 3 24 24 H 0.96997 * 120.00127 * 180.02562 * 10 9 7 25 25 H 1.08001 * 124.38619 * 180.24289 * 17 16 15 26 26 H 1.08998 * 109.47034 * 239.70920 * 19 18 17 27 27 H 1.09001 * 109.46844 * 119.71811 * 19 18 17 28 28 H 0.96698 * 114.00138 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2598 1.1361 -0.4239 5 6 4.6217 1.1587 -0.4327 6 6 5.3517 0.0316 -0.0117 7 6 6.7565 0.0613 -0.0225 8 1 7.3155 -0.8591 -0.1048 9 6 7.4327 1.2860 0.0736 10 7 6.8079 2.3443 0.5179 11 14 9.2266 1.4047 -0.4336 12 1 9.3116 1.7542 -1.8744 13 1 9.9001 2.4555 0.3713 14 1 9.8943 0.0988 -0.2007 15 6 4.6692 -1.1373 0.4259 16 16 5.2928 -2.6782 1.0011 17 6 3.6776 -3.3150 1.2460 18 6 2.7578 -2.4284 0.9095 19 6 1.2814 -2.7115 1.0162 20 8 1.0852 -4.0374 1.5116 21 6 3.2768 -1.1601 0.4347 22 1 2.7092 2.0066 -0.7486 23 1 5.1431 2.0446 -0.7638 24 1 7.2756 3.1915 0.5840 25 1 3.4625 -4.3044 1.6217 26 1 0.8218 -2.6195 0.0322 27 1 0.8229 -1.9967 1.6995 28 1 0.1562 -4.2884 1.6064 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396226698.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = 4.616798 kcal Electronic energy + Delta-G solvation = -16027.872398 eV Core-core repulsion = 13327.534608 eV Total energy + Delta-G solvation = -2700.337790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.73039 -36.84251 -35.58700 -34.82139 -33.33022 -30.50136 -28.52860 -26.97152 -25.66675 -22.32895 -21.59541 -19.22028 -18.37672 -17.58773 -16.86138 -15.78286 -14.89258 -14.85062 -14.74008 -14.21825 -13.58588 -13.45231 -13.04347 -12.65439 -12.22109 -12.13646 -11.88947 -11.75431 -11.51921 -11.39103 -10.97943 -10.87027 -10.38245 -10.34930 -10.27662 -9.81496 -9.68070 -9.50144 -8.35346 -7.59645 -7.32080 -6.91331 -4.81013 1.53853 2.29172 2.50641 2.80557 2.85297 2.87873 3.00248 3.11907 3.57742 3.62720 3.77870 4.39984 4.44851 5.18062 5.21608 5.46202 5.57478 5.77620 5.79779 6.06340 6.34340 6.48381 6.59859 6.72328 6.90899 7.05437 7.19127 7.43849 7.59782 7.70842 7.77333 8.09480 8.26269 8.35157 8.53095 9.60186 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.007179 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.619939 B = 3899.399949 C = 4893.689543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C 0.290 3.710 3 C -0.180 4.180 4 C -0.024 4.024 5 C -0.182 4.182 6 C 0.165 3.835 7 C -0.419 4.419 8 H 0.091 0.909 9 C 0.074 3.926 10 N -0.751 5.751 11 Si 0.918 3.082 12 H -0.261 1.261 13 H -0.272 1.272 14 H -0.256 1.256 15 C -0.217 4.217 16 S 0.063 5.937 17 C -0.175 4.175 18 C -0.117 4.117 19 C 0.142 3.858 20 O -0.572 6.572 21 C 0.020 3.980 22 H 0.102 0.898 23 H 0.130 0.870 24 H 0.293 0.707 25 H 0.160 0.840 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.778 -3.878 -0.053 3.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.189 5.189 2 C -0.019 4.019 3 C -0.189 4.189 4 C -0.045 4.045 5 C -0.205 4.205 6 C 0.159 3.841 7 C -0.446 4.446 8 H 0.109 0.891 9 C -0.151 4.151 10 N -0.372 5.372 11 Si 0.740 3.260 12 H -0.185 1.185 13 H -0.197 1.197 14 H -0.179 1.179 15 C -0.332 4.332 16 S 0.328 5.672 17 C -0.310 4.310 18 C -0.131 4.131 19 C 0.062 3.938 20 O -0.377 6.377 21 C 0.010 3.990 22 H 0.121 0.879 23 H 0.148 0.852 24 H 0.105 0.895 25 H 0.177 0.823 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 1.198 -4.257 0.265 4.431 hybrid contribution -0.852 0.800 -0.308 1.209 sum 0.345 -3.458 -0.043 3.475 Atomic orbital electron populations 1.81073 1.12464 1.10166 1.15208 1.26041 0.92910 0.91744 0.91210 1.15112 0.82592 0.96798 1.24415 1.20161 0.94601 0.94276 0.95479 1.20700 0.91926 1.00170 1.07717 1.17088 0.92926 0.88278 0.85852 1.19867 0.91599 0.94296 1.38804 0.89056 1.26161 1.02168 0.94761 0.91970 1.69736 1.39471 1.01681 1.26300 0.86111 0.80018 0.79868 0.79955 1.18528 1.19662 1.17906 1.22380 0.94438 0.99965 1.16436 1.83569 1.06178 1.07952 1.69545 1.24804 0.96035 1.03317 1.06823 1.19421 0.94431 0.93972 1.05250 1.20581 0.92663 0.83026 0.97538 1.86396 1.30788 1.31864 1.88619 1.18319 0.91713 0.91074 0.97880 0.87947 0.85222 0.89519 0.82256 0.92831 0.92826 0.77597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.76 18.51 41.84 0.77 -9.99 15 2 C 0.29 6.08 12.56 -22.47 -0.28 5.80 15 3 C -0.18 -3.90 5.82 -105.73 -0.62 -4.51 15 4 C -0.02 -0.50 9.61 -39.82 -0.38 -0.88 15 5 C -0.18 -4.11 8.59 -39.37 -0.34 -4.44 15 6 C 0.17 3.87 5.59 -106.55 -0.60 3.27 15 7 C -0.42 -9.50 8.81 -37.98 -0.33 -9.83 15 8 H 0.09 2.00 7.74 -52.49 -0.41 1.60 15 9 C 0.07 1.56 5.11 -17.30 -0.09 1.47 15 10 N -0.75 -16.32 10.98 55.56 0.61 -15.71 15 11 Si 0.92 15.80 29.60 -169.99 -5.03 10.76 15 12 H -0.26 -4.45 7.11 56.52 0.40 -4.05 15 13 H -0.27 -4.59 7.11 56.52 0.40 -4.19 15 14 H -0.26 -4.41 7.11 56.52 0.40 -4.01 15 15 C -0.22 -4.90 6.36 -37.66 -0.24 -5.14 15 16 S 0.06 1.23 22.82 -107.50 -2.45 -1.22 15 17 C -0.18 -3.32 10.29 28.81 0.30 -3.02 15 18 C -0.12 -2.34 5.97 -103.85 -0.62 -2.96 15 19 C 0.14 2.50 5.90 36.01 0.21 2.71 15 20 O -0.57 -8.70 12.49 -35.23 -0.44 -9.14 15 21 C 0.02 0.45 5.99 -105.07 -0.63 -0.18 15 22 H 0.10 1.92 8.06 -52.49 -0.42 1.50 15 23 H 0.13 2.91 6.16 -52.49 -0.32 2.59 15 24 H 0.29 5.68 8.29 -40.82 -0.34 5.34 15 25 H 0.16 2.72 7.42 -52.49 -0.39 2.33 15 26 H 0.05 0.96 7.64 -51.93 -0.40 0.56 15 27 H 0.05 0.97 7.65 -51.93 -0.40 0.57 15 28 H 0.38 3.80 9.12 45.56 0.42 4.22 15 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -25.34 268.39 -7.17 -32.51 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -1.05 Total: 6.46 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -3.62 Total: -17.72 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 1.38 Total: -25.70 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.44 Total: -9.14 kcal Atomic # 14 Polarization: 15.80 SS G_CDS: -5.03 Total: 10.76 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.45 Total: -1.22 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -25.34 -7.17 -32.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396226698.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.125 kcal (2) G-P(sol) polarization free energy of solvation -25.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds