Wall clock time and date at job start Mon Mar 30 2020 06:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39549 * 119.74028 * 159.52327 * 3 2 1 5 5 C 1.36219 * 120.73739 * 180.02562 * 4 3 2 6 6 C 1.40728 * 120.22662 * 359.97438 * 5 4 3 7 7 C 1.40516 * 119.96051 * 180.02562 * 6 5 4 8 8 H 1.07998 * 120.00172 * 205.26462 * 7 6 5 9 9 C 1.40227 * 119.99832 * 25.26773 * 7 6 5 10 10 N 1.30678 * 120.00428 * 17.93741 * 9 7 6 11 11 Si 1.86798 * 119.99736 * 197.94131 * 9 7 6 12 12 H 1.48503 * 109.47318 * 89.99834 * 11 9 7 13 13 H 1.48509 * 109.47147 * 209.99851 * 11 9 7 14 14 H 1.48503 * 109.47169 * 329.99659 * 11 9 7 15 15 C 1.42264 * 120.08040 * 359.97438 * 6 5 4 16 16 S 1.75897 * 130.56327 * 179.97438 * 15 6 5 17 17 C 1.75331 * 92.13280 * 179.83948 * 16 15 6 18 18 C 1.32110 * 111.22952 * 0.33716 * 17 16 15 19 19 C 1.50705 * 122.54642 * 179.86296 * 18 17 16 20 20 O 1.42894 * 109.47371 * 359.71391 * 19 18 17 21 21 C 1.39258 * 119.67410 * 0.02562 * 15 6 5 22 22 H 1.08001 * 119.63285 * 0.02562 * 4 3 2 23 23 H 1.07998 * 119.88541 * 179.97438 * 5 4 3 24 24 H 0.96997 * 120.00127 * 180.02562 * 10 9 7 25 25 H 1.08001 * 124.38619 * 180.24289 * 17 16 15 26 26 H 1.08998 * 109.47034 * 239.70920 * 19 18 17 27 27 H 1.09001 * 109.46844 * 119.71811 * 19 18 17 28 28 H 0.96698 * 114.00138 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2598 1.1361 -0.4239 5 6 4.6217 1.1587 -0.4327 6 6 5.3517 0.0316 -0.0117 7 6 6.7565 0.0613 -0.0225 8 1 7.3155 -0.8591 -0.1048 9 6 7.4327 1.2860 0.0736 10 7 6.8079 2.3443 0.5179 11 14 9.2266 1.4047 -0.4336 12 1 9.3116 1.7542 -1.8744 13 1 9.9001 2.4555 0.3713 14 1 9.8943 0.0988 -0.2007 15 6 4.6692 -1.1373 0.4259 16 16 5.2928 -2.6782 1.0011 17 6 3.6776 -3.3150 1.2460 18 6 2.7578 -2.4284 0.9095 19 6 1.2814 -2.7115 1.0162 20 8 1.0852 -4.0374 1.5116 21 6 3.2768 -1.1601 0.4347 22 1 2.7092 2.0066 -0.7486 23 1 5.1431 2.0446 -0.7638 24 1 7.2756 3.1915 0.5840 25 1 3.4625 -4.3044 1.6217 26 1 0.8218 -2.6195 0.0322 27 1 0.8229 -1.9967 1.6995 28 1 0.1562 -4.2884 1.6064 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396226698.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:17 Heat of formation + Delta-G solvation = -9.414661 kcal Electronic energy + Delta-G solvation = -16028.480847 eV Core-core repulsion = 13327.534608 eV Total energy + Delta-G solvation = -2700.946239 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.33064 -38.22669 -37.24949 -36.34880 -34.91584 -32.17607 -30.13520 -28.51772 -27.22324 -23.96708 -23.23382 -20.79409 -19.98224 -19.16181 -18.21616 -17.38085 -16.43441 -16.39137 -16.11865 -15.77499 -15.12064 -15.01514 -14.66477 -14.23094 -13.83775 -13.73802 -13.46324 -13.30351 -13.05075 -12.82768 -12.57846 -12.31189 -11.98189 -11.87192 -11.77825 -11.27896 -11.19439 -11.10915 -9.99333 -9.25046 -8.92142 -8.51767 -6.51418 -0.08344 0.63923 0.95094 1.37763 1.40097 1.43676 1.54206 1.55970 1.95277 2.12586 2.16916 2.79170 3.15918 3.50349 3.52172 3.92977 4.16179 4.38556 4.39447 4.46833 4.73335 4.86280 5.00783 5.11410 5.29775 5.41677 5.55180 5.75417 5.91995 6.02428 6.40339 6.58090 6.65895 6.78062 6.85172 8.03841 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.025905 B = 0.007179 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.619939 B = 3899.399949 C = 4893.689543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C 0.298 3.702 3 C -0.191 4.191 4 C -0.022 4.022 5 C -0.199 4.199 6 C 0.143 3.857 7 C -0.440 4.440 8 H 0.091 0.909 9 C 0.042 3.958 10 N -0.775 5.775 11 Si 0.985 3.015 12 H -0.256 1.256 13 H -0.263 1.263 14 H -0.256 1.256 15 C -0.248 4.248 16 S 0.082 5.918 17 C -0.163 4.163 18 C -0.137 4.137 19 C 0.155 3.845 20 O -0.574 6.574 21 C 0.009 3.991 22 H 0.123 0.877 23 H 0.125 0.875 24 H 0.304 0.696 25 H 0.183 0.817 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.167 -4.499 0.069 4.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.191 5.191 2 C -0.011 4.011 3 C -0.200 4.200 4 C -0.044 4.044 5 C -0.222 4.222 6 C 0.136 3.864 7 C -0.466 4.466 8 H 0.109 0.891 9 C -0.180 4.180 10 N -0.397 5.397 11 Si 0.804 3.196 12 H -0.181 1.181 13 H -0.188 1.188 14 H -0.179 1.179 15 C -0.363 4.363 16 S 0.347 5.653 17 C -0.298 4.298 18 C -0.151 4.151 19 C 0.075 3.925 20 O -0.383 6.383 21 C -0.001 4.001 22 H 0.140 0.860 23 H 0.143 0.857 24 H 0.115 0.885 25 H 0.200 0.800 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.547 -4.887 0.394 5.141 hybrid contribution -1.010 0.947 -0.304 1.418 sum 0.536 -3.940 0.090 3.978 Atomic orbital electron populations 1.81069 1.12363 1.10331 1.15370 1.25873 0.92638 0.91586 0.91034 1.15227 0.82921 0.97047 1.24813 1.20354 0.94347 0.94888 0.94773 1.20709 0.92496 1.00112 1.08860 1.17408 0.93670 0.89005 0.86309 1.20094 0.91676 0.95193 1.39650 0.89075 1.26916 1.05917 0.93891 0.91309 1.69746 1.41279 1.02397 1.26262 0.85122 0.74939 0.79846 0.79666 1.18070 1.18767 1.17906 1.22684 0.95165 1.01186 1.17293 1.83385 1.06587 1.06311 1.69060 1.25076 0.95308 1.03885 1.05502 1.19636 0.96100 0.93455 1.05876 1.20303 0.90920 0.84050 0.97262 1.86334 1.33286 1.30322 1.88319 1.18639 0.91817 0.91997 0.97695 0.85953 0.85744 0.88463 0.80011 0.93209 0.93408 0.74838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.06 18.51 19.00 0.35 -20.71 15 2 C 0.30 12.29 12.56 88.33 1.11 13.40 15 3 C -0.19 -8.26 5.82 -20.58 -0.12 -8.38 15 4 C -0.02 -0.95 9.61 22.12 0.21 -0.73 15 5 C -0.20 -9.12 8.59 22.41 0.19 -8.93 15 6 C 0.14 6.78 5.59 -21.11 -0.12 6.66 15 7 C -0.44 -20.10 8.81 23.31 0.21 -19.90 15 8 H 0.09 4.03 7.74 -2.91 -0.02 4.01 15 9 C 0.04 1.77 5.11 85.35 0.44 2.21 15 10 N -0.78 -33.69 10.98 21.87 0.24 -33.45 15 11 Si 0.98 31.56 29.60 68.60 2.03 33.59 15 12 H -0.26 -8.00 7.11 99.48 0.71 -7.30 15 13 H -0.26 -8.03 7.11 99.48 0.71 -7.32 15 14 H -0.26 -8.12 7.11 99.48 0.71 -7.42 15 15 C -0.25 -11.28 6.36 23.52 0.15 -11.14 15 16 S 0.08 3.14 22.82 -56.49 -1.29 1.85 15 17 C -0.16 -5.91 10.29 66.85 0.69 -5.22 15 18 C -0.14 -5.35 5.97 -19.09 -0.11 -5.46 15 19 C 0.15 5.22 5.90 71.24 0.42 5.64 15 20 O -0.57 -15.98 12.49 -148.98 -1.86 -17.84 15 21 C 0.01 0.40 5.99 -20.16 -0.12 0.28 15 22 H 0.12 4.56 8.06 -2.91 -0.02 4.54 15 23 H 0.12 5.72 6.16 -2.91 -0.02 5.70 15 24 H 0.30 11.63 8.29 -92.71 -0.77 10.86 15 25 H 0.18 5.70 7.42 -2.91 -0.02 5.67 15 26 H 0.05 1.71 7.64 -2.39 -0.02 1.69 15 27 H 0.05 1.66 7.65 -2.39 -0.02 1.65 15 28 H 0.40 6.92 9.12 -74.06 -0.68 6.24 15 Total: -1.00 -52.79 268.39 2.97 -49.82 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.55 Total: 18.32 kcal Atomic # 6 Polarization: -34.53 SS G_CDS: 2.94 Total: -31.58 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: 0.59 Total: -54.17 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: -1.86 Total: -17.84 kcal Atomic # 14 Polarization: 31.56 SS G_CDS: 2.03 Total: 33.59 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.29 Total: 1.85 kcal Total: -52.79 2.97 -49.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396226698.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.404 kcal (2) G-P(sol) polarization free energy of solvation -52.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds