Wall clock time and date at job start Mon Mar 30 2020 06:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.36110 * 117.00393 * 2 1 4 4 C 1.33209 * 122.16549 * 0.02562 * 3 2 1 5 5 S 1.75469 * 110.65826 * 179.97438 * 4 3 2 6 6 C 1.76210 * 91.61110 * 359.97438 * 5 4 3 7 7 C 1.39885 * 130.07136 * 179.97438 * 6 5 4 8 8 C 1.37349 * 122.47916 * 180.09689 * 7 6 5 9 9 C 1.39526 * 120.91568 * 359.97438 * 8 7 6 10 10 C 1.43205 * 120.45020 * 180.02562 * 9 8 7 11 11 N 6.39678 * 169.94597 * 180.19078 * 2 1 3 12 12 C 1.46272 * 119.09527 * 0.02562 * 9 8 7 13 13 C 1.39873 * 120.71584 * 180.02562 * 12 9 8 14 14 H 1.07992 * 119.99907 * 137.52661 * 13 12 9 15 15 C 1.40281 * 119.99685 * 317.53409 * 13 12 9 16 16 N 1.30669 * 120.00173 * 338.63456 * 15 13 12 17 17 Si 1.86798 * 119.99945 * 158.64471 * 15 13 12 18 18 H 1.48494 * 109.47339 * 59.99167 * 17 15 13 19 19 H 1.48499 * 109.47270 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47123 * 299.99291 * 17 15 13 21 21 C 1.39815 * 109.28225 * 0.02593 * 6 5 4 22 22 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.47317 * 300.00523 * 1 2 3 24 24 H 1.09006 * 109.47122 * 60.00277 * 1 2 3 25 25 H 1.07999 * 124.67386 * 359.97438 * 4 3 2 26 26 H 1.08002 * 118.76145 * 0.37511 * 7 6 5 27 27 H 1.08001 * 119.54716 * 179.97438 * 8 7 6 28 28 H 0.96999 * 120.00341 * 185.40284 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0470 1.2127 0.0000 4 6 1.3643 2.3566 0.0005 5 16 2.4569 3.7296 0.0011 6 6 3.8660 2.6716 0.0014 7 6 5.2288 2.9869 0.0014 8 6 6.2086 2.0244 -0.0003 9 6 5.8811 0.6681 -0.0016 10 6 6.9107 -0.3272 -0.0028 11 7 7.7275 -1.1167 -0.0037 12 6 4.4717 0.2767 -0.0017 13 6 4.1050 -1.0731 -0.0025 14 1 3.2978 -1.4137 0.6289 15 6 4.7860 -1.9843 -0.8233 16 7 5.4488 -1.5565 -1.8650 17 14 4.7450 -3.8094 -0.4274 18 1 3.3397 -4.2889 -0.4476 19 1 5.5361 -4.5536 -1.4401 20 1 5.3262 -4.0368 0.9201 21 6 3.4428 1.3390 0.0004 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 0.2867 2.4289 0.0006 26 1 5.5217 4.0265 0.0074 27 1 7.2470 2.3213 -0.0006 28 1 5.8539 -2.1913 -2.4764 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227058.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:26:58 Heat of formation + Delta-G solvation = 26.446918 kcal Electronic energy + Delta-G solvation = -16452.029198 eV Core-core repulsion = 13752.638033 eV Total energy + Delta-G solvation = -2699.391165 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.14279 -37.31508 -35.23121 -33.93007 -32.93428 -30.17218 -28.37875 -27.13606 -25.57705 -22.89401 -21.55937 -20.06415 -18.30328 -17.07797 -16.24190 -16.11622 -15.36202 -15.13629 -14.81063 -14.00987 -13.44714 -13.03775 -12.85313 -12.61888 -12.08395 -11.92395 -11.77406 -11.71422 -11.39920 -11.29109 -11.17156 -10.80424 -10.76740 -10.58790 -10.16098 -9.80138 -9.59258 -9.33782 -8.00495 -7.57070 -7.25689 -6.64491 -4.79718 1.62352 2.24603 2.42712 2.84176 2.91003 2.96588 3.01296 3.25835 3.68175 4.04165 4.04530 4.12987 4.51151 5.20918 5.45736 5.46794 5.53878 5.65657 5.80768 5.96857 6.18000 6.23500 6.53968 6.72015 6.75945 6.85759 7.06735 7.37043 7.53120 7.60649 7.99195 8.09972 8.23881 8.38460 9.00445 9.68124 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.009854 C = 0.006842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.979027 B = 2840.664919 C = 4091.401490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.288 6.288 3 C 0.189 3.811 4 C -0.386 4.386 5 S 0.037 5.963 6 C -0.032 4.032 7 C -0.236 4.236 8 C 0.009 3.991 9 C -0.159 4.159 10 C 0.321 3.679 11 N -0.509 5.509 12 C 0.207 3.793 13 C -0.410 4.410 14 H 0.107 0.893 15 C 0.078 3.922 16 N -0.741 5.741 17 Si 0.912 3.088 18 H -0.258 1.258 19 H -0.273 1.273 20 H -0.256 1.256 21 C -0.185 4.185 22 H 0.091 0.909 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.150 0.850 26 H 0.104 0.896 27 H 0.108 0.892 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 3.521 1.637 8.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.201 6.201 3 C 0.133 3.867 4 C -0.520 4.520 5 S 0.297 5.703 6 C -0.148 4.148 7 C -0.262 4.262 8 C -0.015 4.015 9 C -0.167 4.167 10 C 0.011 3.989 11 N -0.188 5.188 12 C 0.198 3.802 13 C -0.435 4.435 14 H 0.125 0.875 15 C -0.149 4.149 16 N -0.361 5.361 17 Si 0.735 3.265 18 H -0.182 1.182 19 H -0.197 1.197 20 H -0.180 1.180 21 C -0.192 4.192 22 H 0.110 0.890 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.168 0.832 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.830 3.560 1.440 6.981 hybrid contribution -0.588 -1.747 -0.170 1.852 sum -6.418 1.812 1.270 6.789 Atomic orbital electron populations 1.22931 0.80355 1.02897 1.00583 1.86300 1.19375 1.26062 1.88341 1.17509 0.90722 0.83774 0.94655 1.24231 1.02053 0.94841 1.30836 1.83410 0.95969 1.09134 1.81816 1.22231 0.96840 0.94404 1.01360 1.19225 0.89032 0.97842 1.20052 1.20348 0.97427 0.91008 0.92674 1.16636 0.88738 0.88471 1.22829 1.25259 0.91248 0.91860 0.90550 1.80933 1.13148 1.10149 1.14579 1.19043 0.87170 0.90859 0.83092 1.19676 1.13601 0.91486 1.18760 0.87533 1.26131 0.91850 1.02889 0.94005 1.69605 1.19956 1.39300 1.07228 0.86230 0.79716 0.80113 0.80458 1.18246 1.19726 1.17953 1.18333 0.89742 0.92565 1.18561 0.89046 0.93444 0.93416 0.83202 0.87760 0.87412 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.91 101.05 1.00 1.40 15 2 O -0.29 -5.74 8.74 -20.09 -0.18 -5.92 15 3 C 0.19 3.98 6.63 -40.62 -0.27 3.71 15 4 C -0.39 -7.17 9.99 28.98 0.29 -6.88 15 5 S 0.04 0.68 23.29 -107.50 -2.50 -1.82 15 6 C -0.03 -0.68 6.48 -38.38 -0.25 -0.93 15 7 C -0.24 -4.72 9.94 -39.29 -0.39 -5.11 15 8 C 0.01 0.19 9.68 -39.43 -0.38 -0.19 15 9 C -0.16 -3.75 5.60 -104.26 -0.58 -4.33 15 10 C 0.32 7.85 11.72 -22.47 -0.26 7.59 15 11 N -0.51 -12.73 18.51 41.84 0.77 -11.96 15 12 C 0.21 5.05 5.61 -102.11 -0.57 4.48 15 13 C -0.41 -9.98 7.78 -38.20 -0.30 -10.28 15 14 H 0.11 2.52 7.12 -52.49 -0.37 2.15 15 15 C 0.08 1.85 4.07 -17.28 -0.07 1.78 15 16 N -0.74 -18.29 11.25 55.57 0.63 -17.67 15 17 Si 0.91 18.59 29.62 -169.99 -5.03 13.56 15 18 H -0.26 -4.98 7.11 56.52 0.40 -4.58 15 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 15 20 H -0.26 -5.32 7.11 56.52 0.40 -4.92 15 21 C -0.18 -4.27 6.03 -104.64 -0.63 -4.90 15 22 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 23 H 0.05 0.60 7.82 -51.93 -0.41 0.19 15 24 H 0.05 0.62 7.82 -51.93 -0.41 0.22 15 25 H 0.15 2.37 6.90 -52.49 -0.36 2.01 15 26 H 0.10 1.81 8.06 -52.49 -0.42 1.38 15 27 H 0.11 1.92 8.06 -52.49 -0.42 1.49 15 28 H 0.30 6.84 8.30 -40.82 -0.34 6.50 15 LS Contribution 268.39 15.07 4.04 4.04 Total: -1.00 -26.78 268.39 -6.64 -33.42 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -1.95 Total: 0.01 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -2.42 Total: -13.66 kcal Atomic # 7 Polarization: -31.03 SS G_CDS: 1.40 Total: -29.63 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.18 Total: -5.92 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.50 Total: -1.82 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -26.78 -6.64 -33.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227058.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.864 kcal (2) G-P(sol) polarization free energy of solvation -26.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds