Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38573 * 120.48698 * 255.15321 * 3 2 1 5 5 C 1.39865 * 120.72337 * 179.97438 * 4 3 2 6 6 S 1.76145 * 129.64165 * 180.02562 * 5 4 3 7 7 C 1.75216 * 92.26751 * 179.97438 * 6 5 4 8 8 C 1.50698 * 124.23513 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47432 * 269.97922 * 8 7 6 10 10 C 1.31802 * 111.52733 * 359.72455 * 7 6 5 11 11 C 1.40368 * 120.80986 * 0.02562 * 5 4 3 12 12 C 1.40550 * 119.88865 * 0.02562 * 11 5 4 13 13 C 1.39831 * 120.45401 * 359.97438 * 12 11 5 14 14 C 1.40742 * 120.45070 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99983 * 150.05117 * 14 13 12 16 16 C 1.40125 * 120.00015 * 330.05369 * 14 13 12 17 17 N 1.30742 * 120.00220 * 161.81314 * 16 14 13 18 18 Si 1.86801 * 120.00013 * 341.81112 * 16 14 13 19 19 H 1.48504 * 109.47195 * 95.38609 * 18 16 14 20 20 H 1.48494 * 109.47306 * 215.38776 * 18 16 14 21 21 H 1.48504 * 109.46868 * 335.38927 * 18 16 14 22 22 H 1.07998 * 119.64224 * 0.02562 * 4 3 2 23 23 H 1.09000 * 109.46879 * 29.98022 * 8 7 6 24 24 H 1.09007 * 109.46778 * 149.97763 * 8 7 6 25 25 H 0.96702 * 114.00191 * 180.02562 * 9 8 7 26 26 H 1.07994 * 122.51816 * 180.29958 * 10 7 6 27 27 H 1.07998 * 119.76919 * 180.02562 * 12 11 5 28 28 H 0.96999 * 120.00490 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 0.3069 1.1543 5 6 4.6696 0.3085 1.1600 6 16 5.7876 0.6571 2.4758 7 6 7.1845 0.3856 1.4535 8 6 8.6125 0.5080 1.9192 9 8 9.0648 1.8490 1.7211 10 6 6.8300 0.0546 0.2280 11 6 5.3936 0.0007 -0.0025 12 6 4.7110 -0.3134 -1.1902 13 6 3.3131 -0.3221 -1.2231 14 6 2.6295 -0.6361 -2.4127 15 1 1.6589 -1.1077 -2.3694 16 6 3.2084 -0.3369 -3.6532 17 7 2.7729 -0.9249 -4.7367 18 14 4.6023 0.9021 -3.7589 19 1 5.9035 0.1869 -3.7324 20 1 4.4860 1.6714 -5.0238 21 1 4.5256 1.8331 -2.6045 22 1 2.7329 0.5463 2.0596 23 1 8.6720 0.2572 2.9783 24 1 9.2408 -0.1755 1.3480 25 1 9.9785 2.0010 1.9991 26 1 7.5509 -0.1572 -0.5477 27 1 5.2700 -0.5503 -2.0834 28 1 3.1734 -0.7176 -5.5955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = 8.210021 kcal Electronic energy + Delta-G solvation = -15770.334383 eV Core-core repulsion = 13070.152407 eV Total energy + Delta-G solvation = -2700.181976 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.54625 -37.15099 -35.73853 -34.64555 -33.49206 -30.80431 -29.89516 -26.17936 -25.81496 -22.17036 -21.84427 -20.06048 -18.12817 -17.56518 -17.51532 -16.37426 -15.39216 -15.04388 -14.47136 -13.89179 -13.81634 -13.47876 -13.16216 -12.83386 -12.67155 -12.45264 -12.20085 -11.77812 -11.60751 -11.44841 -11.10939 -10.90951 -10.71084 -10.18022 -10.10923 -10.03917 -9.83409 -9.42340 -8.73183 -7.71451 -7.33764 -7.15517 -4.84295 1.12550 2.14144 2.20967 2.53194 2.67438 2.92871 3.02966 3.14224 3.64731 3.71980 3.87237 4.28147 4.38709 4.95818 5.02311 5.07042 5.14919 5.32913 5.46250 5.75166 6.02957 6.21529 6.28950 6.49703 6.71081 6.73989 6.93696 7.06991 7.37435 7.48642 7.51328 7.91484 8.13696 8.32564 8.50806 9.65144 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.007794 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.261320 B = 3591.554714 C = 4771.737610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.294 3.706 3 C -0.119 4.119 4 C 0.015 3.985 5 C -0.243 4.243 6 S 0.036 5.964 7 C -0.165 4.165 8 C 0.149 3.851 9 O -0.564 6.564 10 C -0.102 4.102 11 C -0.005 4.005 12 C -0.215 4.215 13 C 0.123 3.877 14 C -0.412 4.412 15 H 0.100 0.900 16 C 0.083 3.917 17 N -0.774 5.774 18 Si 0.911 3.089 19 H -0.263 1.263 20 H -0.284 1.284 21 H -0.236 1.236 22 H 0.112 0.888 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.378 0.622 26 H 0.134 0.866 27 H 0.114 0.886 28 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.607 2.061 7.457 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.155 5.155 2 C -0.018 4.018 3 C -0.126 4.126 4 C -0.010 4.010 5 C -0.357 4.357 6 S 0.297 5.703 7 C -0.280 4.280 8 C 0.069 3.931 9 O -0.370 6.370 10 C -0.135 4.135 11 C -0.011 4.011 12 C -0.237 4.237 13 C 0.117 3.883 14 C -0.439 4.439 15 H 0.117 0.883 16 C -0.141 4.141 17 N -0.395 5.395 18 Si 0.735 3.265 19 H -0.188 1.188 20 H -0.211 1.211 21 H -0.159 1.159 22 H 0.130 0.870 23 H 0.074 0.926 24 H 0.080 0.920 25 H 0.224 0.776 26 H 0.152 0.848 27 H 0.132 0.868 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.031 2.446 8.450 13.342 hybrid contribution 1.725 -0.117 -1.586 2.346 sum 11.756 2.329 6.864 13.811 Atomic orbital electron populations 1.81066 1.12389 1.12523 1.09564 1.25490 0.92421 0.92032 0.91843 1.16725 0.83580 1.16139 0.96125 1.19929 0.90628 0.94730 0.95757 1.21556 0.96014 1.21568 0.96579 1.83455 0.95086 1.78165 1.13608 1.23315 0.97666 1.08873 0.98187 1.20431 0.89531 0.84079 0.99020 1.86625 1.33580 1.28795 1.88002 1.21032 0.94946 1.01569 0.95941 1.18974 0.90783 0.97636 0.93730 1.20668 0.93180 1.13872 0.95998 1.18145 0.90598 0.88521 0.91039 1.19589 1.05141 1.30579 0.88608 0.88259 1.26360 0.97217 0.95597 0.94913 1.69623 1.36769 1.32444 1.00674 0.86268 0.79732 0.81232 0.79228 1.18822 1.21096 1.15873 0.86996 0.92636 0.91978 0.77551 0.84809 0.86845 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -11.06 18.54 41.84 0.78 -10.29 15 2 C 0.29 6.57 14.35 -22.47 -0.32 6.25 15 3 C -0.12 -2.59 5.92 -104.38 -0.62 -3.21 15 4 C 0.01 0.29 9.75 -38.85 -0.38 -0.09 15 5 C -0.24 -4.79 6.46 -38.17 -0.25 -5.03 15 6 S 0.04 0.60 23.20 -107.50 -2.49 -1.89 15 7 C -0.17 -2.64 6.00 -36.20 -0.22 -2.85 15 8 C 0.15 1.75 7.47 36.00 0.27 2.02 15 9 O -0.56 -6.80 13.64 -35.23 -0.48 -7.28 15 10 C -0.10 -1.79 10.19 -38.55 -0.39 -2.19 15 11 C 0.00 -0.10 6.01 -105.30 -0.63 -0.73 15 12 C -0.21 -4.69 7.22 -38.11 -0.28 -4.97 15 13 C 0.12 2.86 5.25 -104.89 -0.55 2.31 15 14 C -0.41 -10.24 9.01 -37.93 -0.34 -10.58 15 15 H 0.10 2.66 7.65 -52.49 -0.40 2.26 15 16 C 0.08 1.99 5.40 -17.31 -0.09 1.89 15 17 N -0.77 -18.81 13.92 55.56 0.77 -18.03 15 18 Si 0.91 18.87 24.53 -169.99 -4.17 14.70 15 19 H -0.26 -5.17 6.73 56.52 0.38 -4.78 15 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 15 21 H -0.24 -5.08 6.86 56.52 0.39 -4.69 15 22 H 0.11 1.91 8.06 -52.49 -0.42 1.49 15 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.38 2.35 9.12 45.56 0.42 2.76 15 26 H 0.13 2.06 8.06 -52.49 -0.42 1.64 15 27 H 0.11 2.42 4.73 -52.49 -0.25 2.17 15 28 H 0.29 6.38 8.29 -40.82 -0.34 6.04 15 LS Contribution 269.75 15.07 4.07 4.07 Total: -1.00 -27.58 269.75 -6.43 -34.01 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -1.09 Total: 1.90 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -3.80 Total: -17.18 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 1.55 Total: -28.32 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.48 Total: -7.28 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -4.17 Total: 14.70 kcal Atomic # 16 Polarization: 0.60 SS G_CDS: -2.49 Total: -1.89 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -27.58 -6.43 -34.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.220 kcal (2) G-P(sol) polarization free energy of solvation -27.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds