Wall clock time and date at job start Mon Mar 30 2020 06:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.38573 * 120.48698 * 255.15321 * 3 2 1 5 5 C 1.39865 * 120.72337 * 179.97438 * 4 3 2 6 6 S 1.76145 * 129.64165 * 180.02562 * 5 4 3 7 7 C 1.75216 * 92.26751 * 179.97438 * 6 5 4 8 8 C 1.50698 * 124.23513 * 180.02562 * 7 6 5 9 9 O 1.42898 * 109.47432 * 269.97922 * 8 7 6 10 10 C 1.31802 * 111.52733 * 359.72455 * 7 6 5 11 11 C 1.40368 * 120.80986 * 0.02562 * 5 4 3 12 12 C 1.40550 * 119.88865 * 0.02562 * 11 5 4 13 13 C 1.39831 * 120.45401 * 359.97438 * 12 11 5 14 14 C 1.40742 * 120.45070 * 179.97438 * 13 12 11 15 15 H 1.08000 * 119.99983 * 150.05117 * 14 13 12 16 16 C 1.40125 * 120.00015 * 330.05369 * 14 13 12 17 17 N 1.30742 * 120.00220 * 161.81314 * 16 14 13 18 18 Si 1.86801 * 120.00013 * 341.81112 * 16 14 13 19 19 H 1.48504 * 109.47195 * 95.38609 * 18 16 14 20 20 H 1.48494 * 109.47306 * 215.38776 * 18 16 14 21 21 H 1.48504 * 109.46868 * 335.38927 * 18 16 14 22 22 H 1.07998 * 119.64224 * 0.02562 * 4 3 2 23 23 H 1.09000 * 109.46879 * 29.98022 * 8 7 6 24 24 H 1.09007 * 109.46778 * 149.97763 * 8 7 6 25 25 H 0.96702 * 114.00191 * 180.02562 * 9 8 7 26 26 H 1.07994 * 122.51816 * 180.29958 * 10 7 6 27 27 H 1.07998 * 119.76919 * 180.02562 * 12 11 5 28 28 H 0.96999 * 120.00490 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2709 0.3069 1.1543 5 6 4.6696 0.3085 1.1600 6 16 5.7876 0.6571 2.4758 7 6 7.1845 0.3856 1.4535 8 6 8.6125 0.5080 1.9192 9 8 9.0648 1.8490 1.7211 10 6 6.8300 0.0546 0.2280 11 6 5.3936 0.0007 -0.0025 12 6 4.7110 -0.3134 -1.1902 13 6 3.3131 -0.3221 -1.2231 14 6 2.6295 -0.6361 -2.4127 15 1 1.6589 -1.1077 -2.3694 16 6 3.2084 -0.3369 -3.6532 17 7 2.7729 -0.9249 -4.7367 18 14 4.6023 0.9021 -3.7589 19 1 5.9035 0.1869 -3.7324 20 1 4.4860 1.6714 -5.0238 21 1 4.5256 1.8331 -2.6045 22 1 2.7329 0.5463 2.0596 23 1 8.6720 0.2572 2.9783 24 1 9.2408 -0.1755 1.3480 25 1 9.9785 2.0010 1.9991 26 1 7.5509 -0.1572 -0.5477 27 1 5.2700 -0.5503 -2.0834 28 1 3.1734 -0.7176 -5.5955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:33 Heat of formation + Delta-G solvation = -9.850530 kcal Electronic energy + Delta-G solvation = -15771.117547 eV Core-core repulsion = 13070.152407 eV Total energy + Delta-G solvation = -2700.965140 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12527 -38.22657 -37.33940 -36.26813 -35.06766 -32.48988 -31.32580 -27.69361 -27.24910 -23.76920 -23.33777 -21.51231 -19.79194 -19.21319 -18.36444 -17.79481 -17.01881 -16.47758 -15.86245 -15.30468 -15.16778 -15.00140 -14.76373 -14.51004 -14.17895 -14.00163 -13.77156 -13.41735 -13.29810 -12.79441 -12.67514 -12.48854 -12.25698 -11.77690 -11.58562 -11.42725 -11.06092 -10.91770 -10.31750 -9.31162 -9.09259 -8.62881 -6.64242 -0.40790 0.54302 0.77331 1.04689 1.21829 1.26702 1.39174 1.48677 1.84694 2.04580 2.21066 2.50475 3.27350 3.30002 3.46243 3.92629 4.02043 4.25859 4.35491 4.46584 4.58026 4.69161 4.85920 5.02697 5.06558 5.15439 5.27960 5.46159 5.71121 5.82802 6.07170 6.38330 6.52665 6.71578 6.96811 7.96862 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.019949 B = 0.007794 C = 0.005866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.261320 B = 3591.554714 C = 4771.737610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C 0.302 3.698 3 C -0.135 4.135 4 C 0.023 3.977 5 C -0.254 4.254 6 S 0.077 5.923 7 C -0.152 4.152 8 C 0.148 3.852 9 O -0.587 6.587 10 C -0.129 4.129 11 C -0.010 4.010 12 C -0.228 4.228 13 C 0.118 3.882 14 C -0.453 4.453 15 H 0.060 0.940 16 C 0.055 3.945 17 N -0.817 5.817 18 Si 0.959 3.041 19 H -0.242 1.242 20 H -0.273 1.273 21 H -0.250 1.250 22 H 0.140 0.860 23 H 0.078 0.922 24 H 0.090 0.910 25 H 0.404 0.596 26 H 0.155 0.845 27 H 0.116 0.884 28 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.014 3.061 9.678 18.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.177 5.177 2 C -0.010 4.010 3 C -0.142 4.142 4 C -0.002 4.002 5 C -0.369 4.369 6 S 0.338 5.662 7 C -0.267 4.267 8 C 0.069 3.931 9 O -0.397 6.397 10 C -0.160 4.160 11 C -0.017 4.017 12 C -0.250 4.250 13 C 0.112 3.888 14 C -0.481 4.481 15 H 0.079 0.921 16 C -0.165 4.165 17 N -0.440 5.440 18 Si 0.780 3.220 19 H -0.167 1.167 20 H -0.200 1.200 21 H -0.173 1.173 22 H 0.158 0.842 23 H 0.096 0.904 24 H 0.107 0.893 25 H 0.255 0.745 26 H 0.173 0.827 27 H 0.134 0.866 28 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.459 3.441 10.689 17.528 hybrid contribution 0.814 -0.384 -1.942 2.140 sum 14.273 3.057 8.747 17.017 Atomic orbital electron populations 1.81045 1.12935 1.13423 1.10290 1.25669 0.92628 0.91438 0.91217 1.16878 0.83270 1.17301 0.96765 1.20202 0.91025 0.93059 0.95870 1.22061 0.96649 1.19945 0.98217 1.83386 0.94131 1.76932 1.11707 1.23984 0.99782 1.05690 0.97294 1.20582 0.87051 0.84783 1.00733 1.86536 1.36018 1.28663 1.88451 1.21153 0.93612 1.03753 0.97519 1.19360 0.92771 0.96401 0.93204 1.20699 0.92549 1.14727 0.97044 1.18253 0.91508 0.88205 0.90851 1.19444 1.04462 1.33806 0.90339 0.92134 1.26952 0.98901 0.96447 0.94184 1.69639 1.38724 1.34221 1.01402 0.85562 0.78330 0.79235 0.78874 1.16671 1.19962 1.17335 0.84197 0.90355 0.89253 0.74505 0.82714 0.86624 0.88512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -23.72 18.54 19.00 0.35 -23.37 15 2 C 0.30 13.83 14.35 88.33 1.27 15.10 15 3 C -0.14 -5.95 5.92 -19.71 -0.12 -6.07 15 4 C 0.02 0.87 9.75 22.74 0.22 1.09 15 5 C -0.25 -9.41 6.46 23.18 0.15 -9.26 15 6 S 0.08 2.26 23.20 -56.49 -1.31 0.95 15 7 C -0.15 -4.17 6.00 24.92 0.15 -4.02 15 8 C 0.15 2.67 7.47 71.24 0.53 3.21 15 9 O -0.59 -11.21 13.64 -148.98 -2.03 -13.24 15 10 C -0.13 -4.06 10.19 23.39 0.24 -3.82 15 11 C -0.01 -0.39 6.01 -20.30 -0.12 -0.52 15 12 C -0.23 -9.89 7.22 23.22 0.17 -9.72 15 13 C 0.12 5.62 5.25 -20.04 -0.11 5.51 15 14 C -0.45 -23.80 9.01 23.34 0.21 -23.59 15 15 H 0.06 3.53 7.65 -2.91 -0.02 3.51 15 16 C 0.06 2.73 5.40 85.31 0.46 3.19 15 17 N -0.82 -41.53 13.92 21.86 0.30 -41.22 15 18 Si 0.96 39.00 24.53 68.60 1.68 40.68 15 19 H -0.24 -8.96 6.73 99.48 0.67 -8.29 15 20 H -0.27 -10.49 7.11 99.48 0.71 -9.79 15 21 H -0.25 -10.59 6.86 99.48 0.68 -9.91 15 22 H 0.14 4.43 8.06 -2.91 -0.02 4.41 15 23 H 0.08 1.09 8.14 -2.39 -0.02 1.08 15 24 H 0.09 1.20 8.14 -2.38 -0.02 1.18 15 25 H 0.40 3.00 9.12 -74.06 -0.68 2.33 15 26 H 0.16 4.17 8.06 -2.91 -0.02 4.15 15 27 H 0.12 4.88 4.73 -2.91 -0.01 4.86 15 28 H 0.30 13.63 8.29 -92.71 -0.77 12.86 15 Total: -1.00 -61.25 269.75 2.54 -58.71 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: 0.49 Total: 6.39 kcal Atomic # 6 Polarization: -31.95 SS G_CDS: 3.05 Total: -28.89 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 0.66 Total: -64.59 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: -2.03 Total: -13.24 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.68 Total: 40.68 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.31 Total: 0.95 kcal Total: -61.25 2.54 -58.71 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.857 kcal (2) G-P(sol) polarization free energy of solvation -61.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds