Wall clock time and date at job start Mon Mar 30 2020 06:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39238 * 119.99642 * 217.56433 * 3 2 1 5 5 C 1.38162 * 120.01361 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.75898 * 179.97438 * 5 4 3 7 7 O 1.42894 * 109.47336 * 90.00159 * 6 5 4 8 8 C 1.37696 * 120.48048 * 0.02562 * 5 4 3 9 9 C 1.40514 * 120.66599 * 359.97438 * 8 5 4 10 10 C 1.46707 * 129.48750 * 180.02562 * 9 8 5 11 11 C 1.40782 * 123.29687 * 359.97438 * 10 9 8 12 12 H 1.08006 * 119.99922 * 339.18256 * 11 10 9 13 13 C 1.39746 * 120.00014 * 159.18416 * 11 10 9 14 14 N 1.31045 * 120.00205 * 344.86987 * 13 11 10 15 15 Si 1.86811 * 119.99854 * 164.87224 * 13 11 10 16 16 H 1.48499 * 109.46784 * 94.77654 * 15 13 11 17 17 H 1.48500 * 109.46692 * 214.77023 * 15 13 11 18 18 H 1.48493 * 109.47118 * 334.77158 * 15 13 11 19 19 C 1.36399 * 113.40725 * 179.97438 * 10 9 8 20 20 S 1.69988 * 111.95436 * 359.97438 * 19 10 9 21 21 C 1.39286 * 119.32042 * 359.97438 * 9 8 5 22 22 H 1.08007 * 119.99272 * 359.97438 * 4 3 2 23 23 H 1.09005 * 109.47028 * 209.99893 * 6 5 4 24 24 H 1.09005 * 109.47305 * 329.99736 * 6 5 4 25 25 H 0.96697 * 114.00424 * 179.97438 * 7 6 5 26 26 H 1.08003 * 119.66757 * 179.97438 * 8 5 4 27 27 H 0.97002 * 120.00351 * 179.97438 * 14 13 11 28 28 H 1.07999 * 124.02186 * 180.02562 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2638 0.9568 0.7352 5 6 4.6454 0.9574 0.7358 6 6 5.3925 1.9953 1.5331 7 8 5.6286 1.5028 2.8535 8 6 5.3446 0.0173 0.0125 9 6 4.6673 -0.9587 -0.7379 10 6 5.2097 -2.0395 -1.5686 11 6 6.5888 -2.2637 -1.7415 12 1 7.2935 -1.4680 -1.5495 13 6 7.0459 -3.5157 -2.1614 14 7 6.2492 -4.5550 -2.1108 15 14 8.7927 -3.7079 -2.7950 16 1 9.6763 -4.1465 -1.6850 17 1 8.8174 -4.7236 -3.8781 18 1 9.2728 -2.4067 -3.3254 19 6 4.2470 -2.8058 -2.1572 20 16 2.6815 -2.2811 -1.7525 21 6 3.2745 -0.9690 -0.7446 22 1 2.7232 1.6982 1.3050 23 1 6.3457 2.2085 1.0491 24 1 4.7998 2.9086 1.5865 25 1 6.1068 2.1200 3.4239 26 1 6.4245 0.0302 0.0221 27 1 6.5663 -5.4240 -2.4026 28 1 4.4545 -3.6463 -2.8027 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227084.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:25 Heat of formation + Delta-G solvation = -10.602984 kcal Electronic energy + Delta-G solvation = -15796.282169 eV Core-core repulsion = 13095.284400 eV Total energy + Delta-G solvation = -2700.997769 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.66113 -37.81981 -37.75705 -36.40951 -34.24085 -32.62742 -30.27449 -28.29382 -26.63654 -24.64544 -23.67280 -21.01361 -19.75507 -18.54566 -18.18369 -17.74643 -17.04870 -16.55373 -15.71966 -15.49509 -15.23096 -14.87582 -14.70830 -14.23955 -13.99496 -13.79517 -13.67010 -13.29651 -13.04032 -12.75885 -12.61217 -12.35070 -12.17673 -11.85340 -11.60816 -11.28333 -11.02561 -10.79391 -10.25085 -9.24590 -8.68913 -8.53944 -6.29672 -0.28942 0.12802 0.96478 1.26404 1.41829 1.53644 1.55480 1.65521 1.89145 2.14700 2.24383 2.73432 2.86623 3.33940 3.69173 3.91119 4.15620 4.23740 4.37270 4.53745 4.64742 4.77646 5.00327 5.12389 5.21357 5.22466 5.52113 5.62565 5.89325 5.96837 6.37596 6.49260 6.81101 6.93341 7.11235 8.38277 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018215 B = 0.007670 C = 0.005551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.844156 B = 3649.755089 C = 5043.143135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.280 3.720 3 C -0.033 4.033 4 C -0.022 4.022 5 C -0.118 4.118 6 C 0.128 3.872 7 O -0.591 6.591 8 C -0.020 4.020 9 C -0.095 4.095 10 C 0.066 3.934 11 C -0.461 4.461 12 H 0.088 0.912 13 C 0.027 3.973 14 N -0.828 5.828 15 Si 0.985 3.015 16 H -0.263 1.263 17 H -0.275 1.275 18 H -0.252 1.252 19 C -0.398 4.398 20 S 0.062 5.938 21 C -0.112 4.112 22 H 0.169 0.831 23 H 0.072 0.928 24 H 0.087 0.913 25 H 0.400 0.600 26 H 0.137 0.863 27 H 0.284 0.716 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.417 11.661 5.388 13.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.034 4.034 3 C -0.043 4.043 4 C -0.044 4.044 5 C -0.122 4.122 6 C 0.051 3.949 7 O -0.401 6.401 8 C -0.041 4.041 9 C -0.105 4.105 10 C 0.057 3.943 11 C -0.493 4.493 12 H 0.106 0.894 13 C -0.187 4.187 14 N -0.454 5.454 15 Si 0.806 3.194 16 H -0.188 1.188 17 H -0.200 1.200 18 H -0.175 1.175 19 C -0.533 4.533 20 S 0.326 5.674 21 C -0.231 4.231 22 H 0.186 0.814 23 H 0.090 0.910 24 H 0.105 0.895 25 H 0.250 0.750 26 H 0.154 0.846 27 H 0.094 0.906 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.045 10.265 4.625 11.258 hybrid contribution 2.632 -0.141 -0.111 2.638 sum 2.587 10.124 4.514 11.382 Atomic orbital electron populations 1.81151 1.12381 1.09360 1.10108 1.25700 0.92549 0.92639 0.92552 1.15307 0.83401 1.00190 1.05441 1.21150 0.93637 0.95434 0.94191 1.19536 0.93080 0.99176 1.00392 1.20955 0.98925 0.92891 0.82127 1.86547 1.80787 1.48721 1.24027 1.21207 1.00592 0.90426 0.91843 1.19714 0.91521 0.98713 1.00583 1.17702 0.94831 0.90525 0.91202 1.19337 0.91598 0.97864 1.40497 0.89365 1.26759 1.04088 0.94564 0.93277 1.69964 1.39320 1.00898 1.35238 0.85135 0.76410 0.79320 0.78546 1.18773 1.19966 1.17541 1.24150 0.93626 1.15384 1.20157 1.81861 1.10665 1.25997 1.48903 1.22855 0.97149 1.00107 1.02974 0.81388 0.90970 0.89512 0.74965 0.84552 0.90558 0.84554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.87 18.54 19.01 0.35 -16.52 15 2 C 0.28 9.90 15.05 88.33 1.33 11.23 15 3 C -0.03 -1.15 5.77 -21.06 -0.12 -1.28 15 4 C -0.02 -0.60 9.37 22.49 0.21 -0.39 15 5 C -0.12 -3.27 5.49 -20.01 -0.11 -3.38 15 6 C 0.13 2.34 7.15 71.24 0.51 2.85 15 7 O -0.59 -11.89 13.64 -148.98 -2.03 -13.92 15 8 C -0.02 -0.71 9.48 22.70 0.22 -0.50 15 9 C -0.10 -4.24 6.02 -20.26 -0.12 -4.36 15 10 C 0.07 3.43 5.69 -20.87 -0.12 3.31 15 11 C -0.46 -23.47 9.06 23.26 0.21 -23.26 15 12 H 0.09 4.12 7.66 -2.91 -0.02 4.10 15 13 C 0.03 1.34 5.31 85.17 0.45 1.79 15 14 N -0.83 -43.55 10.90 21.80 0.24 -43.31 15 15 Si 0.99 37.09 29.59 68.60 2.03 39.12 15 16 H -0.26 -9.51 7.11 99.48 0.71 -8.80 15 17 H -0.27 -10.17 7.11 99.48 0.71 -9.47 15 18 H -0.25 -9.04 7.11 99.48 0.71 -8.33 15 19 C -0.40 -21.13 9.51 67.39 0.64 -20.49 15 20 S 0.06 2.82 22.64 -56.49 -1.28 1.55 15 21 C -0.11 -4.78 6.31 23.25 0.15 -4.63 15 22 H 0.17 3.29 8.06 -2.91 -0.02 3.27 15 23 H 0.07 1.11 8.08 -2.38 -0.02 1.09 15 24 H 0.09 1.04 8.08 -2.38 -0.02 1.02 15 25 H 0.40 3.54 9.12 -74.06 -0.68 2.87 15 26 H 0.14 4.49 7.83 -2.91 -0.02 4.46 15 27 H 0.28 13.64 8.30 -92.71 -0.77 12.87 15 28 H 0.14 7.84 6.31 -2.91 -0.02 7.82 15 Total: -1.00 -64.40 274.27 3.10 -61.30 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: 0.55 Total: 10.90 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 3.24 Total: -39.11 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.59 Total: -59.83 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -2.03 Total: -13.92 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -1.28 Total: 1.55 kcal Total: -64.40 3.10 -61.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227084.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.695 kcal (2) G-P(sol) polarization free energy of solvation -64.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds