Wall clock time and date at job start Mon Mar 30 2020 06:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.40106 * 120.04329 * 327.34251 * 3 2 1 5 5 C 1.36172 * 120.17729 * 179.97438 * 4 3 2 6 6 C 1.40090 * 120.71906 * 0.02562 * 5 4 3 7 7 S 1.75834 * 130.06637 * 180.31521 * 6 5 4 8 8 C 1.69964 * 93.26011 * 180.02562 * 7 6 5 9 9 C 1.50698 * 123.99051 * 179.91615 * 8 7 6 10 10 O 1.42900 * 109.47335 * 266.80560 * 9 8 7 11 11 C 1.36400 * 112.01826 * 359.64260 * 8 7 6 12 12 C 1.40754 * 123.30295 * 180.23118 * 11 8 7 13 13 H 1.08004 * 120.00252 * 323.06605 * 12 11 8 14 14 C 1.39760 * 120.00243 * 143.07076 * 12 11 8 15 15 N 1.31051 * 119.99850 * 339.48644 * 14 12 11 16 16 Si 1.86801 * 120.00347 * 159.48923 * 14 12 11 17 17 H 1.48498 * 109.47122 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46853 * 119.99573 * 16 14 12 19 19 H 1.48498 * 109.47044 * 239.99554 * 16 14 12 20 20 C 1.39584 * 119.81891 * 0.02562 * 6 5 4 21 21 C 1.38999 * 120.04009 * 147.32084 * 3 2 1 22 22 H 1.08000 * 119.91025 * 359.97438 * 4 3 2 23 23 H 1.08004 * 119.64247 * 180.02562 * 5 4 3 24 24 H 1.08997 * 109.47367 * 146.80205 * 9 8 7 25 25 H 1.09005 * 109.47259 * 26.79994 * 9 8 7 26 26 H 0.96700 * 114.00657 * 180.02562 * 10 9 8 27 27 H 0.96996 * 120.00181 * 177.12692 * 15 14 12 28 28 H 1.08000 * 119.97426 * 0.04542 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 -1.0201 0.6545 5 6 4.6316 -1.0225 0.6557 6 6 5.3496 -0.0096 0.0068 7 16 7.0851 0.2238 -0.1519 8 6 6.9082 1.6507 -1.0584 9 6 8.0632 2.4653 -1.5811 10 8 8.3848 3.4932 -0.6420 11 6 5.5974 1.9680 -1.2619 12 6 5.1798 3.0998 -1.9870 13 1 5.7334 4.0241 -1.9115 14 6 4.0486 3.0277 -2.8046 15 7 3.6139 1.8635 -3.2206 16 14 3.1563 4.5908 -3.3046 17 1 3.8418 5.7648 -2.7071 18 1 3.1635 4.7131 -4.7845 19 1 1.7539 4.5370 -2.8192 20 6 4.6655 1.0152 -0.6490 21 6 3.2634 1.0138 -0.6497 22 1 2.7295 -1.8072 1.1593 23 1 5.1640 -1.8138 1.1626 24 1 7.7875 2.9171 -2.5340 25 1 8.9293 1.8187 -1.7227 26 1 9.1209 4.0583 -0.9139 27 1 2.8052 1.8099 -3.7534 28 1 2.7233 1.8013 -1.1541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227088.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:53 Heat of formation + Delta-G solvation = 8.966728 kcal Electronic energy + Delta-G solvation = -16173.284115 eV Core-core repulsion = 13473.134952 eV Total energy + Delta-G solvation = -2700.149163 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.93964 -36.53865 -35.89499 -34.65848 -32.71338 -30.44537 -29.46946 -26.95486 -24.69049 -23.23916 -21.18535 -19.90296 -18.21485 -16.70114 -16.60154 -16.10903 -15.37044 -14.82884 -14.55087 -13.57562 -13.55729 -13.45498 -13.11012 -12.72655 -12.48308 -12.40774 -12.20160 -11.80660 -11.44270 -11.20600 -11.00538 -10.83455 -10.66123 -10.09677 -9.83848 -9.73606 -9.20116 -9.08298 -8.69210 -7.57679 -7.07555 -6.67188 -4.55952 1.34444 1.76689 2.60451 2.81911 3.01817 3.06734 3.12771 3.20405 3.47614 3.67150 3.85673 4.43921 4.50447 4.91323 5.34269 5.45409 5.48716 5.94965 5.98830 6.02423 6.23761 6.38955 6.60456 6.67303 6.81299 6.93099 6.95758 7.09530 7.46488 7.73706 7.96559 8.19170 8.37803 8.46135 8.68150 9.99247 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.011398 C = 0.006666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.858933 B = 2456.047114 C = 4199.616479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.278 3.722 3 C -0.081 4.081 4 C -0.073 4.073 5 C -0.105 4.105 6 C -0.114 4.114 7 S 0.077 5.923 8 C -0.391 4.391 9 C 0.186 3.814 10 O -0.574 6.574 11 C 0.146 3.854 12 C -0.447 4.447 13 H 0.089 0.911 14 C 0.080 3.920 15 N -0.791 5.791 16 Si 0.897 3.103 17 H -0.257 1.257 18 H -0.272 1.272 19 H -0.269 1.269 20 C -0.051 4.051 21 C 0.030 3.970 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.053 0.947 25 H 0.025 0.975 26 H 0.358 0.642 27 H 0.284 0.716 28 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 -1.806 2.470 5.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.132 5.132 2 C -0.036 4.036 3 C -0.089 4.089 4 C -0.096 4.096 5 C -0.128 4.128 6 C -0.231 4.231 7 S 0.342 5.658 8 C -0.507 4.507 9 C 0.108 3.892 10 O -0.378 6.378 11 C 0.137 3.863 12 C -0.479 4.479 13 H 0.107 0.893 14 C -0.139 4.139 15 N -0.417 5.417 16 Si 0.721 3.279 17 H -0.181 1.181 18 H -0.198 1.198 19 H -0.194 1.194 20 C -0.062 4.062 21 C 0.008 3.992 22 H 0.141 0.859 23 H 0.140 0.860 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.203 0.797 27 H 0.095 0.905 28 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.092 -2.918 3.055 5.235 hybrid contribution -0.840 1.700 -1.249 2.271 sum 2.252 -1.218 1.806 3.133 Atomic orbital electron populations 1.81139 1.12256 1.09215 1.10589 1.25812 0.92717 0.92678 0.92416 1.15764 0.83847 1.00703 1.08556 1.20360 0.93530 0.96998 0.98687 1.19918 0.93057 0.98164 1.01711 1.22989 0.98609 0.99076 1.02417 1.81747 1.00281 1.24750 1.59009 1.22467 0.96848 1.05871 1.25485 1.19808 0.92176 0.86657 0.90530 1.86709 1.55243 1.47026 1.48803 1.17191 0.88051 0.90618 0.90479 1.19037 1.09354 0.97393 1.22125 0.89262 1.25882 0.96350 0.97422 0.94245 1.69965 1.20085 1.25796 1.25808 0.86414 0.79825 0.82661 0.79008 1.18051 1.19766 1.19441 1.19311 0.92951 0.95769 0.98136 1.21099 0.92885 0.94814 0.90453 0.85877 0.86022 0.92870 0.95645 0.79717 0.90512 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.95 18.54 41.84 0.78 -8.18 15 2 C 0.28 5.19 15.32 -22.47 -0.34 4.84 15 3 C -0.08 -1.51 5.72 -106.99 -0.61 -2.12 15 4 C -0.07 -1.18 9.68 -39.62 -0.38 -1.56 15 5 C -0.10 -1.78 10.00 -39.63 -0.40 -2.17 15 6 C -0.11 -2.33 6.45 -38.39 -0.25 -2.58 15 7 S 0.08 1.54 22.89 -107.50 -2.46 -0.93 15 8 C -0.39 -8.92 5.93 -34.97 -0.21 -9.13 15 9 C 0.19 3.74 7.04 36.00 0.25 4.00 15 10 O -0.57 -11.03 13.64 -35.23 -0.48 -11.51 15 11 C 0.15 3.56 5.39 -106.20 -0.57 2.99 15 12 C -0.45 -10.95 8.19 -38.06 -0.31 -11.26 15 13 H 0.09 2.20 7.86 -52.48 -0.41 1.79 15 14 C 0.08 1.85 4.10 -17.32 -0.07 1.77 15 15 N -0.79 -18.78 10.72 55.54 0.60 -18.19 15 16 Si 0.90 17.74 29.61 -169.99 -5.03 12.70 15 17 H -0.26 -5.08 7.11 56.52 0.40 -4.68 15 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 15 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 20 C -0.05 -1.17 5.56 -105.24 -0.59 -1.76 15 21 C 0.03 0.64 8.14 -38.56 -0.31 0.33 15 22 H 0.12 1.60 8.06 -52.49 -0.42 1.18 15 23 H 0.12 1.68 8.06 -52.48 -0.42 1.26 15 24 H 0.05 1.08 7.64 -51.93 -0.40 0.68 15 25 H 0.03 0.46 8.14 -51.93 -0.42 0.03 15 26 H 0.36 4.76 9.12 45.56 0.42 5.18 15 27 H 0.28 6.26 8.30 -40.82 -0.34 5.92 15 28 H 0.13 2.91 5.98 -52.49 -0.31 2.60 15 LS Contribution 271.40 15.07 4.09 4.09 Total: -1.00 -27.14 271.40 -7.42 -34.56 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -1.11 Total: 4.10 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -3.79 Total: -16.66 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 1.37 Total: -26.36 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.48 Total: -11.51 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.70 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.46 Total: -0.93 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.14 -7.42 -34.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227088.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.526 kcal (2) G-P(sol) polarization free energy of solvation -27.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds