Wall clock time and date at job start Mon Mar 30 2020 06:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.35346 * 123.08802 * 99.10226 * 3 2 1 5 5 S 1.69995 * 112.12387 * 180.02562 * 4 3 2 6 6 C 1.75825 * 93.06260 * 359.97438 * 5 4 3 7 7 C 1.40023 * 109.93080 * 0.02562 * 6 5 4 8 8 C 1.41383 * 119.53155 * 180.02562 * 7 6 5 9 9 C 1.35462 * 120.76542 * 0.02562 * 8 7 6 10 10 C 1.41149 * 120.21138 * 359.97438 * 9 8 7 11 11 C 1.41064 * 120.15651 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99885 * 206.79328 * 11 10 9 13 13 C 1.39872 * 120.00357 * 26.79809 * 11 10 9 14 14 N 1.30893 * 119.99671 * 16.18248 * 13 11 10 15 15 Si 1.86803 * 120.00311 * 196.17934 * 13 11 10 16 16 H 1.48496 * 109.47101 * 265.18957 * 15 13 11 17 17 H 1.48499 * 109.46756 * 25.18724 * 15 13 11 18 18 H 1.48504 * 109.47225 * 145.18748 * 15 13 11 19 19 C 1.39032 * 130.25116 * 180.29010 * 6 5 4 20 20 C 1.50701 * 120.00694 * 359.95985 * 19 6 5 21 21 O 1.42893 * 109.47296 * 270.21293 * 20 19 6 22 22 H 1.07999 * 123.93837 * 359.97438 * 4 3 2 23 23 H 1.07998 * 119.61244 * 179.97438 * 8 7 6 24 24 H 1.08005 * 119.89379 * 179.97438 * 9 8 7 25 25 H 0.97000 * 119.99672 * 179.97438 * 14 13 11 26 26 H 1.09003 * 109.46494 * 30.21289 * 20 19 6 27 27 H 1.08997 * 109.46762 * 150.20961 * 20 19 6 28 28 H 0.96700 * 114.00278 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3069 0.1804 -1.1197 5 16 4.9758 0.1293 -0.8006 6 6 4.7342 -0.1459 0.9191 7 6 3.3648 -0.1926 1.2073 8 6 2.9396 -0.4052 2.5388 9 6 3.8414 -0.5634 3.5372 10 6 5.2245 -0.5183 3.2588 11 6 6.1625 -0.6827 4.2995 12 1 7.1449 -0.2418 4.2156 13 6 5.8205 -1.4168 5.4399 14 7 4.7774 -2.2072 5.4209 15 14 6.8524 -1.2691 6.9900 16 1 7.8607 -2.3590 7.0192 17 1 7.5437 0.0451 7.0011 18 1 5.9733 -1.3761 8.1821 19 6 5.6618 -0.3043 1.9426 20 6 7.1367 -0.2492 1.6381 21 8 7.6079 -1.5615 1.3258 22 1 2.8853 0.3371 -2.1016 23 1 1.8837 -0.4410 2.7626 24 1 3.5010 -0.7247 4.5495 25 1 4.5404 -2.7166 6.2117 26 1 7.3076 0.4104 0.7873 27 1 7.6730 0.1322 2.5070 28 1 8.5516 -1.6017 1.1184 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227148.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:43 Heat of formation + Delta-G solvation = 7.671672 kcal Electronic energy + Delta-G solvation = -16059.009448 eV Core-core repulsion = 13358.804127 eV Total energy + Delta-G solvation = -2700.205320 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.64823 -36.67696 -35.67232 -34.75586 -32.99718 -30.64151 -29.15341 -25.86793 -25.10871 -23.42752 -21.04168 -20.48587 -17.84869 -16.73987 -16.57450 -16.25593 -15.60151 -14.66441 -14.43950 -13.75644 -13.61502 -13.18524 -13.07337 -12.58604 -12.48951 -12.26077 -12.17846 -11.60788 -11.45870 -11.31671 -11.13325 -10.84948 -10.66223 -10.19633 -10.10638 -9.51620 -9.36074 -9.16242 -8.57497 -7.57481 -7.18056 -6.87007 -4.65144 1.32348 2.27655 2.47608 2.57160 2.67096 2.91073 2.93207 2.98466 3.16467 3.68569 3.86801 4.35613 4.66177 5.05058 5.37170 5.55932 5.85065 5.92863 6.10330 6.21661 6.32433 6.54636 6.65099 6.75697 6.91191 7.12147 7.39011 7.50703 7.64710 7.83918 7.93728 8.19214 8.37209 8.48617 8.54174 9.81313 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.007275 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.069888 B = 3847.776878 C = 4872.743591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.289 3.711 3 C -0.005 4.005 4 C -0.243 4.243 5 S 0.123 5.877 6 C -0.062 4.062 7 C -0.173 4.173 8 C -0.070 4.070 9 C -0.128 4.128 10 C 0.147 3.853 11 C -0.426 4.426 12 H 0.089 0.911 13 C 0.073 3.927 14 N -0.772 5.772 15 Si 0.916 3.084 16 H -0.266 1.266 17 H -0.257 1.257 18 H -0.272 1.272 19 C -0.199 4.199 20 C 0.144 3.856 21 O -0.562 6.562 22 H 0.157 0.843 23 H 0.096 0.904 24 H 0.128 0.872 25 H 0.289 0.711 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.204 3.119 -3.525 7.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.026 4.026 3 C -0.024 4.024 4 C -0.382 4.382 5 S 0.390 5.610 6 C -0.177 4.177 7 C -0.179 4.179 8 C -0.091 4.091 9 C -0.147 4.147 10 C 0.141 3.859 11 C -0.454 4.454 12 H 0.107 0.893 13 C -0.149 4.149 14 N -0.395 5.395 15 Si 0.739 3.261 16 H -0.191 1.191 17 H -0.180 1.180 18 H -0.197 1.197 19 C -0.207 4.207 20 C 0.067 3.933 21 O -0.366 6.366 22 H 0.175 0.825 23 H 0.114 0.886 24 H 0.145 0.855 25 H 0.100 0.900 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 3.891 2.953 -4.248 6.474 hybrid contribution -0.073 -0.127 1.417 1.424 sum 3.819 2.826 -2.831 5.530 Atomic orbital electron populations 1.81134 1.12086 1.10673 1.08810 1.25419 0.92252 0.92554 0.92419 1.16011 0.84157 1.08420 0.93810 1.24547 0.99548 1.12943 1.01158 1.82436 1.01154 1.74696 1.02745 1.21985 0.95926 1.04549 0.95201 1.18148 0.90242 1.17008 0.92508 1.20198 0.98105 1.00017 0.90756 1.21038 0.92889 1.02029 0.98789 1.17335 0.92387 0.85961 0.90249 1.19707 1.00340 1.26204 0.99156 0.89282 1.26066 0.95263 0.92984 1.00540 1.69825 1.22763 1.16372 1.30583 0.86156 0.80133 0.80242 0.79581 1.19128 1.18046 1.19687 1.18507 0.91369 1.19495 0.91369 1.20612 0.92597 0.83249 0.96854 1.86738 1.27430 1.30332 1.92066 0.82529 0.88599 0.85463 0.90029 0.95582 0.93139 0.79692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.96 18.54 41.84 0.78 -8.19 15 2 C 0.29 5.57 15.42 -22.47 -0.35 5.22 15 3 C -0.01 -0.10 5.85 -105.92 -0.62 -0.72 15 4 C -0.24 -4.07 10.63 29.70 0.32 -3.75 15 5 S 0.12 2.11 22.25 -107.50 -2.39 -0.28 15 6 C -0.06 -1.32 6.27 -38.62 -0.24 -1.56 15 7 C -0.17 -3.77 6.05 -104.95 -0.63 -4.40 15 8 C -0.07 -1.57 9.78 -39.38 -0.39 -1.96 15 9 C -0.13 -3.05 8.58 -39.47 -0.34 -3.38 15 10 C 0.15 3.53 5.54 -106.93 -0.59 2.94 15 11 C -0.43 -9.95 8.42 -37.90 -0.32 -10.27 15 12 H 0.09 1.96 6.24 -52.48 -0.33 1.63 15 13 C 0.07 1.62 5.15 -17.34 -0.09 1.54 15 14 N -0.77 -18.04 11.00 55.54 0.61 -17.43 15 15 Si 0.92 16.59 29.59 -169.99 -5.03 11.56 15 16 H -0.27 -4.83 7.11 56.52 0.40 -4.42 15 17 H -0.26 -4.57 7.11 56.52 0.40 -4.17 15 18 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 19 C -0.20 -4.48 5.60 -103.54 -0.58 -5.06 15 20 C 0.14 2.76 6.63 36.01 0.24 3.00 15 21 O -0.56 -10.73 13.64 -35.23 -0.48 -11.21 15 22 H 0.16 2.14 8.06 -52.49 -0.42 1.71 15 23 H 0.10 2.01 8.06 -52.49 -0.42 1.59 15 24 H 0.13 3.04 6.25 -52.48 -0.33 2.72 15 25 H 0.29 6.08 8.30 -40.82 -0.34 5.74 15 26 H 0.03 0.44 7.58 -51.93 -0.39 0.05 15 27 H 0.05 0.93 6.23 -51.93 -0.32 0.61 15 28 H 0.36 4.71 9.12 45.56 0.42 5.13 15 LS Contribution 270.09 15.07 4.07 4.07 Total: -1.00 -26.79 270.09 -6.98 -33.77 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -0.94 Total: 6.13 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -3.59 Total: -18.41 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 1.39 Total: -25.62 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.48 Total: -11.21 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.03 Total: 11.56 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.39 Total: -0.28 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -26.79 -6.98 -33.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227148.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.438 kcal (2) G-P(sol) polarization free energy of solvation -26.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds