Wall clock time and date at job start Mon Mar 30 2020 06:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.35346 * 123.08802 * 99.10226 * 3 2 1 5 5 S 1.69995 * 112.12387 * 180.02562 * 4 3 2 6 6 C 1.75825 * 93.06260 * 359.97438 * 5 4 3 7 7 C 1.40023 * 109.93080 * 0.02562 * 6 5 4 8 8 C 1.41383 * 119.53155 * 180.02562 * 7 6 5 9 9 C 1.35462 * 120.76542 * 0.02562 * 8 7 6 10 10 C 1.41149 * 120.21138 * 359.97438 * 9 8 7 11 11 C 1.41064 * 120.15651 * 179.97438 * 10 9 8 12 12 H 1.08006 * 119.99885 * 206.79328 * 11 10 9 13 13 C 1.39872 * 120.00357 * 26.79809 * 11 10 9 14 14 N 1.30893 * 119.99671 * 16.18248 * 13 11 10 15 15 Si 1.86803 * 120.00311 * 196.17934 * 13 11 10 16 16 H 1.48496 * 109.47101 * 265.18957 * 15 13 11 17 17 H 1.48499 * 109.46756 * 25.18724 * 15 13 11 18 18 H 1.48504 * 109.47225 * 145.18748 * 15 13 11 19 19 C 1.39032 * 130.25116 * 180.29010 * 6 5 4 20 20 C 1.50701 * 120.00694 * 359.95985 * 19 6 5 21 21 O 1.42893 * 109.47296 * 270.21293 * 20 19 6 22 22 H 1.07999 * 123.93837 * 359.97438 * 4 3 2 23 23 H 1.07998 * 119.61244 * 179.97438 * 8 7 6 24 24 H 1.08005 * 119.89379 * 179.97438 * 9 8 7 25 25 H 0.97000 * 119.99672 * 179.97438 * 14 13 11 26 26 H 1.09003 * 109.46494 * 30.21289 * 20 19 6 27 27 H 1.08997 * 109.46762 * 150.20961 * 20 19 6 28 28 H 0.96700 * 114.00278 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3069 0.1804 -1.1197 5 16 4.9758 0.1293 -0.8006 6 6 4.7342 -0.1459 0.9191 7 6 3.3648 -0.1926 1.2073 8 6 2.9396 -0.4052 2.5388 9 6 3.8414 -0.5634 3.5372 10 6 5.2245 -0.5183 3.2588 11 6 6.1625 -0.6827 4.2995 12 1 7.1449 -0.2418 4.2156 13 6 5.8205 -1.4168 5.4399 14 7 4.7774 -2.2072 5.4209 15 14 6.8524 -1.2691 6.9900 16 1 7.8607 -2.3590 7.0192 17 1 7.5437 0.0451 7.0011 18 1 5.9733 -1.3761 8.1821 19 6 5.6618 -0.3043 1.9426 20 6 7.1367 -0.2492 1.6381 21 8 7.6079 -1.5615 1.3258 22 1 2.8853 0.3371 -2.1016 23 1 1.8837 -0.4410 2.7626 24 1 3.5010 -0.7247 4.5495 25 1 4.5404 -2.7166 6.2117 26 1 7.3076 0.4104 0.7873 27 1 7.6730 0.1322 2.5070 28 1 8.5516 -1.6017 1.1184 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227148.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:42 Heat of formation + Delta-G solvation = -8.371480 kcal Electronic energy + Delta-G solvation = -16059.705131 eV Core-core repulsion = 13358.804127 eV Total energy + Delta-G solvation = -2700.901004 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26510 -38.20530 -37.17690 -36.34780 -34.60249 -32.29519 -30.78787 -27.48006 -26.67466 -24.98571 -22.69898 -22.10565 -19.50151 -18.25051 -18.06543 -17.78632 -17.17504 -16.26743 -16.00895 -15.30450 -15.15696 -14.69755 -14.58995 -14.11691 -14.07951 -13.83667 -13.75980 -13.13990 -13.03425 -12.81255 -12.66302 -12.42321 -12.12043 -11.77938 -11.66672 -11.12625 -10.99056 -10.61740 -10.17882 -9.23674 -8.79530 -8.40718 -6.36272 -0.15967 0.76871 0.80096 0.94413 1.14803 1.41699 1.48854 1.56803 1.64369 2.18228 2.31290 2.72433 3.17339 3.44270 3.94272 4.07143 4.28157 4.45354 4.60418 4.68296 4.78253 4.95562 5.02545 5.11795 5.23730 5.47993 5.71500 5.83390 5.92730 6.13451 6.43175 6.49678 6.80129 6.83770 7.20485 8.21967 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023642 B = 0.007275 C = 0.005745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.069888 B = 3847.776878 C = 4872.743591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.301 3.699 3 C -0.036 4.036 4 C -0.205 4.205 5 S 0.199 5.801 6 C -0.098 4.098 7 C -0.181 4.181 8 C -0.082 4.082 9 C -0.148 4.148 10 C 0.116 3.884 11 C -0.458 4.458 12 H 0.094 0.906 13 C 0.035 3.965 14 N -0.814 5.814 15 Si 0.985 3.015 16 H -0.263 1.263 17 H -0.251 1.251 18 H -0.269 1.269 19 C -0.213 4.213 20 C 0.148 3.852 21 O -0.584 6.584 22 H 0.200 0.800 23 H 0.099 0.901 24 H 0.113 0.887 25 H 0.293 0.707 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.384 3.795 -5.650 9.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.014 4.014 3 C -0.055 4.055 4 C -0.345 4.345 5 S 0.466 5.534 6 C -0.213 4.213 7 C -0.188 4.188 8 C -0.102 4.102 9 C -0.167 4.167 10 C 0.110 3.890 11 C -0.486 4.486 12 H 0.112 0.888 13 C -0.182 4.182 14 N -0.439 5.439 15 Si 0.805 3.195 16 H -0.188 1.188 17 H -0.174 1.174 18 H -0.194 1.194 19 C -0.221 4.221 20 C 0.071 3.929 21 O -0.391 6.391 22 H 0.217 0.783 23 H 0.117 0.883 24 H 0.131 0.869 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.070 0.930 28 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.099 3.634 -6.384 8.942 hybrid contribution -0.464 -0.294 1.765 1.849 sum 4.635 3.340 -4.618 7.346 Atomic orbital electron populations 1.81147 1.12507 1.11721 1.09239 1.25358 0.92127 0.91938 0.91997 1.15891 0.84124 1.11770 0.93699 1.25205 0.99710 1.07410 1.02141 1.82213 1.00287 1.72727 0.98144 1.22377 0.95706 1.04944 0.98277 1.18433 0.91290 1.16179 0.92867 1.20318 0.98094 1.00280 0.91530 1.21010 0.93626 1.03579 0.98531 1.17680 0.92588 0.87022 0.91692 1.19916 1.00726 1.27702 1.00257 0.88764 1.26876 0.96182 0.92070 1.03077 1.69886 1.24675 1.17696 1.31593 0.85137 0.78422 0.80268 0.75703 1.18816 1.17410 1.19356 1.18955 0.93523 1.18483 0.91175 1.20562 0.90712 0.83671 0.97946 1.86650 1.29968 1.30339 1.92162 0.78300 0.88305 0.86948 0.89626 0.93058 0.93007 0.76699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -18.13 18.54 19.01 0.35 -17.78 15 2 C 0.30 11.11 15.42 88.33 1.36 12.47 15 3 C -0.04 -1.30 5.85 -20.71 -0.12 -1.42 15 4 C -0.21 -5.95 10.63 67.15 0.71 -5.24 15 5 S 0.20 6.01 22.25 -56.49 -1.26 4.75 15 6 C -0.10 -4.08 6.27 22.89 0.14 -3.94 15 7 C -0.18 -7.81 6.05 -20.08 -0.12 -7.93 15 8 C -0.08 -3.80 9.78 22.40 0.22 -3.58 15 9 C -0.15 -7.41 8.58 22.34 0.19 -7.22 15 10 C 0.12 5.78 5.54 -21.36 -0.12 5.66 15 11 C -0.46 -22.09 8.42 23.36 0.20 -21.89 15 12 H 0.09 4.24 6.24 -2.91 -0.02 4.22 15 13 C 0.04 1.62 5.15 85.23 0.44 2.05 15 14 N -0.81 -39.86 11.00 21.82 0.24 -39.62 15 15 Si 0.98 34.64 29.59 68.60 2.03 36.66 15 16 H -0.26 -9.04 7.11 99.48 0.71 -8.34 15 17 H -0.25 -8.45 7.11 99.48 0.71 -7.74 15 18 H -0.27 -9.19 7.11 99.48 0.71 -8.48 15 19 C -0.21 -9.59 5.60 -19.16 -0.11 -9.70 15 20 C 0.15 5.47 6.63 71.24 0.47 5.94 15 21 O -0.58 -21.37 13.64 -148.98 -2.03 -23.40 15 22 H 0.20 4.13 8.06 -2.91 -0.02 4.11 15 23 H 0.10 4.34 8.06 -2.91 -0.02 4.32 15 24 H 0.11 5.80 6.25 -2.91 -0.02 5.78 15 25 H 0.29 12.96 8.30 -92.71 -0.77 12.19 15 26 H 0.05 1.60 7.58 -2.39 -0.02 1.58 15 27 H 0.05 1.88 6.23 -2.39 -0.01 1.86 15 28 H 0.38 9.24 9.12 -74.06 -0.68 8.57 15 Total: -1.00 -59.26 270.09 3.16 -56.10 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: 0.56 Total: 18.08 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 3.27 Total: -34.79 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: 0.59 Total: -57.40 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -2.03 Total: -23.40 kcal Atomic # 14 Polarization: 34.64 SS G_CDS: 2.03 Total: 36.66 kcal Atomic # 16 Polarization: 6.01 SS G_CDS: -1.26 Total: 4.75 kcal Total: -59.26 3.16 -56.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227148.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.725 kcal (2) G-P(sol) polarization free energy of solvation -59.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds