Wall clock time and date at job start Mon Mar 30 2020 06:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39557 * 119.63167 * 160.58512 * 3 2 1 5 5 C 1.39233 * 121.33112 * 179.97438 * 4 3 2 6 6 S 1.76110 * 130.45315 * 179.97438 * 5 4 3 7 7 C 1.75500 * 91.50329 * 180.02562 * 6 5 4 8 8 C 1.50693 * 124.66575 * 179.97438 * 7 6 5 9 9 O 1.42899 * 109.47536 * 270.02962 * 8 7 6 10 10 C 1.32844 * 110.67355 * 0.02562 * 7 6 5 11 11 C 1.39832 * 115.85168 * 359.97438 * 10 7 6 12 12 C 1.47951 * 129.02408 * 179.97438 * 11 10 7 13 13 C 1.40670 * 120.29850 * 0.02562 * 12 11 10 14 14 H 1.08003 * 119.99897 * 24.95500 * 13 12 11 15 15 C 1.39971 * 120.00120 * 204.95186 * 13 12 11 16 16 N 1.30850 * 119.99877 * 17.83502 * 15 13 12 17 17 Si 1.86797 * 120.00262 * 197.82908 * 15 13 12 18 18 H 1.48502 * 109.46981 * 60.00150 * 17 15 13 19 19 H 1.48498 * 109.47336 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47445 * 300.00457 * 17 15 13 21 21 C 1.39135 * 119.64362 * 340.60407 * 3 2 1 22 22 H 1.07995 * 119.33172 * 359.97438 * 4 3 2 23 23 H 1.09002 * 109.46955 * 30.03057 * 8 7 6 24 24 H 1.09001 * 109.47010 * 150.02233 * 8 7 6 25 25 H 0.96699 * 114.00421 * 180.02562 * 9 8 7 26 26 H 1.07995 * 122.07163 * 179.73216 * 10 7 6 27 27 H 0.96998 * 119.99693 * 179.97438 * 16 15 13 28 28 H 1.07997 * 120.00550 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2575 1.1450 -0.4032 5 6 4.6492 1.1848 -0.4165 6 16 5.7510 2.4804 -0.8734 7 6 7.1484 1.4793 -0.5198 8 6 8.5807 1.9209 -0.6760 9 8 9.0333 1.6123 -1.9958 10 6 6.7700 0.2783 -0.0967 11 6 5.3900 0.0651 -0.0217 12 6 4.6564 -1.1469 0.4048 13 6 5.3593 -2.2961 0.8097 14 1 6.3635 -2.2065 1.1969 15 6 4.7571 -3.5558 0.7109 16 7 3.7123 -3.7230 -0.0589 17 14 5.4451 -4.9984 1.6778 18 1 5.3955 -4.6900 3.1295 19 1 4.6346 -6.2115 1.4009 20 1 6.8527 -5.2407 1.2711 21 6 3.2567 -1.1397 0.4016 22 1 2.7003 2.0174 -0.7112 23 1 8.6496 2.9960 -0.5103 24 1 9.2028 1.4006 0.0524 25 1 9.9496 1.8691 -2.1676 26 1 7.4838 -0.4873 0.1690 27 1 3.2953 -4.5960 -0.1277 28 1 2.7114 -2.0191 0.7107 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227180.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:21 Heat of formation + Delta-G solvation = -7.679133 kcal Electronic energy + Delta-G solvation = -15737.345477 eV Core-core repulsion = 13036.474496 eV Total energy + Delta-G solvation = -2700.870981 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.06422 -38.14743 -37.48705 -36.20093 -35.20268 -31.86294 -31.10042 -27.91474 -26.71355 -24.09747 -23.05849 -21.24284 -20.15614 -18.33731 -18.29968 -17.62725 -16.87214 -16.32636 -16.25857 -15.15195 -14.95382 -14.85149 -14.80701 -14.27215 -14.01936 -13.77281 -13.61962 -13.38280 -13.10068 -12.81685 -12.53438 -12.27913 -12.17856 -11.74761 -11.55502 -11.34435 -11.16327 -10.86130 -10.12771 -9.14994 -8.85628 -8.55847 -6.40730 -0.31329 0.77777 0.85472 1.22945 1.30547 1.42303 1.53129 1.56539 1.69654 2.14570 2.20096 2.67313 3.11346 3.48230 3.69434 4.18657 4.32601 4.36690 4.57756 4.68475 4.77194 4.94685 5.01916 5.08649 5.25032 5.42789 5.74300 5.79715 5.81711 5.93195 6.32453 6.51631 6.64006 6.68928 7.02837 8.06986 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.014492 B = 0.008532 C = 0.005546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1931.613922 B = 3280.803872 C = 5047.064142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C 0.291 3.709 3 C 0.017 3.983 4 C -0.193 4.193 5 C -0.094 4.094 6 S 0.066 5.934 7 C -0.233 4.233 8 C 0.160 3.840 9 O -0.590 6.590 10 C -0.065 4.065 11 C -0.187 4.187 12 C 0.124 3.876 13 C -0.437 4.437 14 H 0.100 0.900 15 C 0.036 3.964 16 N -0.792 5.792 17 Si 0.989 3.011 18 H -0.255 1.255 19 H -0.269 1.269 20 H -0.253 1.253 21 C -0.163 4.163 22 H 0.119 0.881 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.399 0.601 26 H 0.136 0.864 27 H 0.300 0.700 28 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.408 4.035 1.476 11.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.023 4.023 3 C 0.011 3.989 4 C -0.221 4.221 5 C -0.210 4.210 6 S 0.329 5.671 7 C -0.348 4.348 8 C 0.081 3.919 9 O -0.399 6.399 10 C -0.094 4.094 11 C -0.194 4.194 12 C 0.119 3.881 13 C -0.463 4.463 14 H 0.118 0.882 15 C -0.184 4.184 16 N -0.415 5.415 17 Si 0.808 3.192 18 H -0.179 1.179 19 H -0.194 1.194 20 H -0.177 1.177 21 C -0.188 4.188 22 H 0.137 0.863 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.249 0.751 26 H 0.154 0.846 27 H 0.111 0.889 28 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.796 5.138 0.780 9.369 hybrid contribution 0.866 -1.911 0.676 2.205 sum 8.662 3.227 1.455 9.357 Atomic orbital electron populations 1.81063 1.12616 1.10142 1.11234 1.26114 0.92950 0.91409 0.91822 1.15672 0.82782 0.96003 1.04466 1.19472 0.90840 0.97699 1.14062 1.22329 0.97104 0.97417 1.04133 1.83299 0.95675 1.15763 1.72360 1.23793 0.98686 0.98306 1.14058 1.20365 0.87422 0.99352 0.84718 1.86576 1.35186 1.86339 1.31845 1.19740 0.94481 0.96224 0.99005 1.19464 0.92915 0.96128 1.10937 1.18531 0.91076 0.90740 0.87746 1.19963 1.02240 0.90737 1.33403 0.88236 1.26989 0.94139 1.03478 0.93832 1.69837 1.17553 1.27592 1.26496 0.85112 0.79592 0.75228 0.79258 1.17882 1.19365 1.17658 1.20999 0.94044 0.96299 1.07495 0.86329 0.91118 0.90143 0.75086 0.84601 0.88907 0.86330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.72 18.54 19.00 0.35 -20.37 15 2 C 0.29 12.58 15.28 88.33 1.35 13.93 15 3 C 0.02 0.76 5.71 -21.50 -0.12 0.64 15 4 C -0.19 -8.22 9.70 22.83 0.22 -8.00 15 5 C -0.09 -4.07 6.47 22.92 0.15 -3.92 15 6 S 0.07 2.35 23.27 -56.49 -1.31 1.04 15 7 C -0.23 -8.13 6.07 24.51 0.15 -7.98 15 8 C 0.16 4.03 7.50 71.23 0.53 4.57 15 9 O -0.59 -15.17 13.64 -148.98 -2.03 -17.20 15 10 C -0.06 -2.57 9.59 21.48 0.21 -2.36 15 11 C -0.19 -8.48 6.02 -19.91 -0.12 -8.60 15 12 C 0.12 6.00 5.75 -19.69 -0.11 5.89 15 13 C -0.44 -20.08 8.81 23.28 0.21 -19.88 15 14 H 0.10 4.24 7.49 -2.91 -0.02 4.22 15 15 C 0.04 1.55 5.13 85.26 0.44 1.99 15 16 N -0.79 -36.54 10.98 21.83 0.24 -36.30 15 17 Si 0.99 32.50 29.60 68.60 2.03 34.53 15 18 H -0.25 -8.20 7.11 99.48 0.71 -7.50 15 19 H -0.27 -8.58 7.11 99.48 0.71 -7.87 15 20 H -0.25 -7.98 7.11 99.48 0.71 -7.27 15 21 C -0.16 -7.86 8.34 22.91 0.19 -7.67 15 22 H 0.12 4.53 8.06 -2.91 -0.02 4.51 15 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.08 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.40 5.32 9.12 -74.06 -0.68 4.64 15 26 H 0.14 5.03 7.69 -2.91 -0.02 5.00 15 27 H 0.30 12.46 8.30 -92.71 -0.77 11.70 15 28 H 0.12 5.90 6.16 -2.91 -0.02 5.88 15 Total: -1.00 -56.20 274.80 2.91 -53.29 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.55 Total: 16.41 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: 3.09 Total: -31.40 kcal Atomic # 7 Polarization: -57.26 SS G_CDS: 0.59 Total: -56.67 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: -2.03 Total: -17.20 kcal Atomic # 14 Polarization: 32.50 SS G_CDS: 2.03 Total: 34.53 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -56.20 2.91 -53.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227180.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.608 kcal (2) G-P(sol) polarization free energy of solvation -56.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds