Wall clock time and date at job start Mon Mar 30 2020 06:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39419 * 119.79837 * 357.05555 * 3 2 1 5 5 C 1.40013 * 119.73153 * 179.97438 * 4 3 2 6 6 C 1.41005 * 120.00897 * 180.02562 * 5 4 3 7 7 H 1.07993 * 120.00603 * 154.33714 * 6 5 4 8 8 C 1.39907 * 119.99623 * 334.33263 * 6 5 4 9 9 N 1.30882 * 120.00370 * 342.55450 * 8 6 5 10 10 Si 1.86801 * 120.00063 * 162.54808 * 8 6 5 11 11 H 1.48504 * 109.46882 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47179 * 120.00245 * 10 8 6 13 13 H 1.48500 * 109.47538 * 240.00423 * 10 8 6 14 14 C 1.42347 * 119.99007 * 359.97438 * 5 4 3 15 15 S 1.75944 * 130.36743 * 179.97438 * 14 5 4 16 16 C 1.75291 * 92.19675 * 179.83541 * 15 14 5 17 17 C 1.31781 * 111.38438 * 0.31561 * 16 15 14 18 18 C 1.39569 * 119.91293 * 0.02562 * 14 5 4 19 19 C 1.39174 * 119.80066 * 177.03020 * 3 2 1 20 20 C 1.50706 * 119.60020 * 0.02562 * 19 3 2 21 21 O 1.42893 * 109.46959 * 269.99741 * 20 19 3 22 22 H 1.07991 * 120.13536 * 359.97438 * 4 3 2 23 23 H 0.96992 * 119.99995 * 179.97438 * 9 8 6 24 24 H 1.08009 * 124.30579 * 180.18577 * 16 15 14 25 25 H 1.08004 * 122.55394 * 179.89762 * 17 16 15 26 26 H 1.08997 * 109.47038 * 30.00106 * 20 19 3 27 27 H 1.09005 * 109.46839 * 149.99876 * 20 19 3 28 28 H 0.96701 * 114.00419 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2614 -1.2073 0.0621 5 6 4.6615 -1.2051 0.0615 6 6 5.3687 -2.4234 0.1237 7 1 6.3687 -2.4885 -0.2789 8 6 4.7748 -3.5479 0.7070 9 7 3.7334 -3.4075 1.4871 10 14 5.4683 -5.2498 0.3722 11 1 6.6387 -5.1378 -0.5349 12 1 5.8923 -5.8721 1.6521 13 1 4.4255 -6.0925 -0.2663 14 6 5.3710 0.0273 -0.0030 15 16 7.1012 0.3466 -0.0196 16 6 6.8489 2.0786 -0.1153 17 6 5.5655 2.3774 -0.1257 18 6 4.6692 1.2321 -0.0649 19 6 3.2591 1.2070 -0.0626 20 6 2.4914 2.5022 -0.1292 21 8 2.2483 2.8420 -1.4957 22 1 2.7208 -2.1409 0.1106 23 1 3.3215 -4.1871 1.8912 24 1 7.6443 2.8081 -0.1580 25 1 5.2060 3.3944 -0.1792 26 1 1.5407 2.3882 0.3916 27 1 3.0724 3.2937 0.3443 28 1 1.7576 3.6667 -1.6147 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227222.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:07 Heat of formation + Delta-G solvation = -7.841882 kcal Electronic energy + Delta-G solvation = -16139.432076 eV Core-core repulsion = 13438.554038 eV Total energy + Delta-G solvation = -2700.878039 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38099 -37.72746 -37.44345 -36.49977 -34.84063 -32.50440 -30.27703 -28.59000 -25.57200 -24.83130 -22.82929 -21.89033 -19.40244 -18.36030 -18.26972 -17.88329 -17.04369 -16.56378 -15.85014 -15.01073 -14.93699 -14.87189 -14.65347 -14.44313 -14.03940 -13.73465 -13.65484 -13.28634 -13.03404 -12.78621 -12.73057 -12.34285 -12.06846 -11.76763 -11.56983 -11.26408 -11.08644 -10.84498 -10.08162 -9.18370 -8.82223 -8.51344 -6.42788 0.09797 0.20810 1.02830 1.28760 1.40816 1.49892 1.55413 1.67617 1.73179 2.10499 2.17001 2.68610 3.08133 3.37409 3.84690 4.08005 4.23377 4.28225 4.55690 4.59704 4.76624 4.91293 5.08128 5.21108 5.28637 5.34956 5.57410 5.71109 5.85408 6.03251 6.32078 6.52576 6.68938 6.70179 7.00237 8.16630 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017118 B = 0.009245 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.345907 B = 3027.884523 C = 4507.318039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C 0.291 3.709 3 C 0.003 3.997 4 C -0.152 4.152 5 C 0.123 3.877 6 C -0.467 4.467 7 H 0.087 0.913 8 C 0.040 3.960 9 N -0.807 5.807 10 Si 0.980 3.020 11 H -0.253 1.253 12 H -0.263 1.263 13 H -0.265 1.265 14 C -0.223 4.223 15 S 0.056 5.944 16 C -0.187 4.187 17 C -0.129 4.129 18 C -0.037 4.037 19 C -0.154 4.154 20 C 0.139 3.861 21 O -0.584 6.584 22 H 0.116 0.884 23 H 0.295 0.705 24 H 0.198 0.802 25 H 0.162 0.838 26 H 0.036 0.964 27 H 0.076 0.924 28 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.274 7.243 -1.168 9.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.023 4.023 3 C -0.002 4.002 4 C -0.178 4.178 5 C 0.118 3.882 6 C -0.495 4.495 7 H 0.105 0.895 8 C -0.178 4.178 9 N -0.431 5.431 10 Si 0.801 3.199 11 H -0.176 1.176 12 H -0.188 1.188 13 H -0.190 1.190 14 C -0.339 4.339 15 S 0.319 5.681 16 C -0.321 4.321 17 C -0.160 4.160 18 C -0.046 4.046 19 C -0.160 4.160 20 C 0.062 3.938 21 O -0.392 6.392 22 H 0.134 0.866 23 H 0.106 0.894 24 H 0.215 0.785 25 H 0.180 0.820 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 5.026 5.721 -1.048 7.687 hybrid contribution -1.217 0.301 0.148 1.262 sum 3.810 6.021 -0.901 7.182 Atomic orbital electron populations 1.81039 1.12480 1.09940 1.11462 1.26044 0.93000 0.91379 0.91848 1.15738 0.83036 0.95063 1.06354 1.21016 0.93727 0.95076 1.07955 1.17089 0.91241 0.90907 0.88992 1.19816 1.02241 0.94130 1.33304 0.89469 1.26777 0.94233 1.05178 0.91586 1.69848 1.18691 1.34647 1.19899 0.85156 0.79563 0.75682 0.79537 1.17638 1.18795 1.18958 1.23121 0.96845 0.96806 1.17136 1.83593 1.03415 1.01608 1.79529 1.25368 1.00619 0.98747 1.07357 1.21047 0.91895 0.98692 1.04359 1.19027 0.92689 0.92109 1.00733 1.18890 0.91171 0.92509 1.13445 1.20691 0.96583 0.93564 0.82983 1.86606 1.79473 1.47019 1.26090 0.86586 0.89395 0.78522 0.82035 0.94627 0.90589 0.75993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.93 18.54 19.00 0.35 -20.58 15 2 C 0.29 12.92 13.67 88.33 1.21 14.12 15 3 C 0.00 0.14 5.71 -21.53 -0.12 0.02 15 4 C -0.15 -7.58 8.35 22.99 0.19 -7.39 15 5 C 0.12 6.18 5.58 -21.15 -0.12 6.06 15 6 C -0.47 -22.93 8.81 23.35 0.21 -22.72 15 7 H 0.09 4.14 7.75 -2.91 -0.02 4.12 15 8 C 0.04 1.87 5.12 85.24 0.44 2.30 15 9 N -0.81 -39.17 10.99 21.82 0.24 -38.93 15 10 Si 0.98 35.28 29.59 68.60 2.03 37.31 15 11 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 12 H -0.26 -9.09 7.11 99.48 0.71 -8.39 15 13 H -0.26 -9.31 7.11 99.48 0.71 -8.61 15 14 C -0.22 -10.09 6.37 23.61 0.15 -9.94 15 15 S 0.06 2.05 22.81 -56.49 -1.29 0.76 15 16 C -0.19 -5.48 11.02 67.07 0.74 -4.74 15 17 C -0.13 -4.13 9.78 23.41 0.23 -3.90 15 18 C -0.04 -1.54 5.96 -20.38 -0.12 -1.66 15 19 C -0.15 -6.39 5.62 -18.95 -0.11 -6.50 15 20 C 0.14 4.56 6.56 71.24 0.47 5.02 15 21 O -0.58 -18.43 13.64 -148.98 -2.03 -20.46 15 22 H 0.12 6.08 6.19 -2.92 -0.02 6.06 15 23 H 0.30 12.92 8.30 -92.71 -0.77 12.15 15 24 H 0.20 3.95 8.06 -2.91 -0.02 3.93 15 25 H 0.16 4.05 7.50 -2.91 -0.02 4.03 15 26 H 0.04 1.17 7.02 -2.39 -0.02 1.16 15 27 H 0.08 2.02 7.21 -2.38 -0.02 2.01 15 28 H 0.39 7.70 9.12 -74.06 -0.68 7.02 15 Total: -1.00 -58.94 270.59 3.02 -55.92 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.56 Total: 15.30 kcal Atomic # 6 Polarization: -32.48 SS G_CDS: 3.16 Total: -29.33 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: 0.59 Total: -59.51 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -2.03 Total: -20.46 kcal Atomic # 14 Polarization: 35.28 SS G_CDS: 2.03 Total: 37.31 kcal Atomic # 16 Polarization: 2.05 SS G_CDS: -1.29 Total: 0.76 kcal Total: -58.94 3.02 -55.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227222.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.078 kcal (2) G-P(sol) polarization free energy of solvation -58.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds