Wall clock time and date at job start Mon Mar 30 2020 06:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39547 * 119.74299 * 109.87896 * 3 2 1 5 5 C 1.36218 * 120.73604 * 179.76154 * 4 3 2 6 6 C 1.50705 * 119.88201 * 180.26236 * 5 4 3 7 7 O 1.42892 * 109.47357 * 0.21293 * 6 5 4 8 8 C 1.40719 * 120.22850 * 0.47525 * 5 4 3 9 9 C 1.40521 * 119.95742 * 179.78424 * 8 5 4 10 10 H 1.08003 * 120.00277 * 322.82112 * 9 8 5 11 11 C 1.40226 * 120.00140 * 142.82841 * 9 8 5 12 12 N 1.30685 * 119.99438 * 332.23521 * 11 9 8 13 13 Si 1.86802 * 120.00262 * 152.23440 * 11 9 8 14 14 H 1.48503 * 109.46732 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.46941 * 299.99731 * 13 11 9 16 16 H 1.48494 * 109.46885 * 59.99857 * 13 11 9 17 17 C 1.42261 * 120.07795 * 359.51029 * 8 5 4 18 18 S 1.75902 * 130.56191 * 180.25227 * 17 8 5 19 19 C 1.75323 * 92.13471 * 179.97438 * 18 17 8 20 20 C 1.32120 * 111.22849 * 0.02562 * 19 18 17 21 21 C 1.39242 * 119.67824 * 0.24813 * 17 8 5 22 22 H 1.08003 * 119.63240 * 0.02562 * 4 3 2 23 23 H 1.09002 * 109.47273 * 120.22114 * 6 5 4 24 24 H 1.08999 * 109.46856 * 240.21358 * 6 5 4 25 25 H 0.96703 * 114.00462 * 179.97438 * 7 6 5 26 26 H 0.97000 * 119.99986 * 357.73973 * 12 11 9 27 27 H 1.07994 * 124.38384 * 180.02562 * 19 18 17 28 28 H 1.08000 * 122.54584 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 0.4129 -1.1394 5 6 4.6221 0.4262 -1.1600 6 6 5.3499 0.8807 -2.3989 7 8 4.4003 1.2475 -3.4017 8 6 5.3517 0.0126 -0.0300 9 6 6.7565 0.0243 -0.0590 10 1 7.2803 -0.2456 -0.9642 11 6 7.4786 0.3862 1.0873 12 7 6.9491 1.1985 1.9635 13 14 9.1970 -0.2928 1.3619 14 1 9.7408 0.2379 2.6378 15 1 9.1388 -1.7752 1.4279 16 1 10.0770 0.1186 0.2389 17 6 4.6687 -0.4116 1.1436 18 16 5.2919 -0.9702 2.6908 19 6 3.6766 -1.2018 3.3320 20 6 2.7570 -0.8802 2.4396 21 6 3.2765 -0.4203 1.1660 22 1 2.7098 0.7291 -2.0133 23 1 5.9748 1.7408 -2.1582 24 1 5.9759 0.0695 -2.7706 25 1 4.7990 1.5513 -4.2286 26 1 6.0702 1.5769 1.8049 27 1 3.4613 -1.5608 4.3275 28 1 1.6989 -0.9542 2.6431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396227934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:19 Heat of formation + Delta-G solvation = -0.863075 kcal Electronic energy + Delta-G solvation = -16328.648358 eV Core-core repulsion = 13628.072943 eV Total energy + Delta-G solvation = -2700.575415 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.80039 -36.45958 -35.59979 -34.97464 -33.51475 -30.40074 -29.06669 -26.09776 -25.07141 -22.24686 -21.94072 -19.60930 -18.29617 -17.82236 -16.95549 -15.27601 -14.93668 -14.47732 -14.36520 -14.12144 -13.92999 -13.30222 -13.09870 -12.90236 -12.34043 -12.16227 -12.01400 -11.70977 -11.52608 -11.15834 -10.90422 -10.64744 -10.58123 -10.32674 -9.88785 -9.83856 -9.49196 -9.11559 -8.54244 -7.79173 -7.54261 -6.70866 -4.94165 1.45331 2.24885 2.53702 2.92055 2.98337 3.04756 3.14718 3.16940 3.62678 3.71625 3.75911 4.39769 4.81826 4.97199 5.11460 5.35930 5.84948 5.95433 6.05448 6.13944 6.22489 6.44104 6.58462 6.73968 6.92598 6.96686 7.25194 7.33187 7.41958 7.57054 7.73718 8.11756 8.16959 8.27450 8.49940 9.56434 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.010429 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.530900 B = 2684.186595 C = 4095.730592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.290 3.710 3 C -0.168 4.168 4 C 0.011 3.989 5 C -0.204 4.204 6 C 0.149 3.851 7 O -0.578 6.578 8 C 0.148 3.852 9 C -0.492 4.492 10 H 0.093 0.907 11 C 0.028 3.972 12 N -0.737 5.737 13 Si 1.057 2.943 14 H -0.267 1.267 15 H -0.267 1.267 16 H -0.271 1.271 17 C -0.217 4.217 18 S 0.111 5.889 19 C -0.215 4.215 20 C -0.140 4.140 21 C 0.012 3.988 22 H 0.116 0.884 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.371 0.629 26 H 0.304 0.696 27 H 0.152 0.848 28 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.795 -1.536 -1.261 5.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.180 5.180 2 C -0.020 4.020 3 C -0.176 4.176 4 C -0.011 4.011 5 C -0.209 4.209 6 C 0.072 3.928 7 O -0.382 6.382 8 C 0.141 3.859 9 C -0.518 4.518 10 H 0.111 0.889 11 C -0.199 4.199 12 N -0.357 5.357 13 Si 0.878 3.122 14 H -0.191 1.191 15 H -0.192 1.192 16 H -0.197 1.197 17 C -0.333 4.333 18 S 0.377 5.623 19 C -0.349 4.349 20 C -0.173 4.173 21 C 0.001 3.999 22 H 0.134 0.866 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.216 0.784 26 H 0.117 0.883 27 H 0.169 0.831 28 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 5.301 -1.890 1.007 5.718 hybrid contribution -2.004 0.353 -1.946 2.815 sum 3.297 -1.537 -0.939 3.757 Atomic orbital electron populations 1.81066 1.12523 1.14561 1.09891 1.25941 0.92784 0.91325 0.91926 1.15178 0.82817 1.23257 0.96398 1.19947 0.93837 0.92770 0.94531 1.18828 0.92610 1.12802 0.96661 1.20497 0.89074 0.97375 0.85838 1.86437 1.37025 1.88237 1.26508 1.16711 0.92834 0.88187 0.88157 1.20722 0.91429 1.38674 1.01003 0.88877 1.27202 1.07355 0.93927 0.91402 1.70423 1.17585 1.13808 1.33865 0.83699 0.72530 0.77805 0.78137 1.19112 1.19164 1.19652 1.22464 0.94687 1.15991 1.00191 1.84109 1.04024 1.67698 1.06488 1.25347 0.99012 1.07475 1.03092 1.20810 0.99481 1.04093 0.92879 1.18738 0.91742 0.97361 0.92019 0.86576 0.93365 0.93907 0.78387 0.88272 0.83054 0.85837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.26 18.54 41.84 0.78 -10.48 15 2 C 0.29 6.37 14.96 -22.47 -0.34 6.03 15 3 C -0.17 -3.71 5.82 -105.73 -0.62 -4.32 15 4 C 0.01 0.23 8.96 -39.82 -0.36 -0.13 15 5 C -0.20 -4.39 5.89 -104.41 -0.62 -5.00 15 6 C 0.15 2.68 6.33 36.01 0.23 2.91 15 7 O -0.58 -9.38 12.09 -35.23 -0.43 -9.80 15 8 C 0.15 3.37 5.01 -106.55 -0.53 2.83 15 9 C -0.49 -10.78 8.09 -37.98 -0.31 -11.09 15 10 H 0.09 1.93 7.35 -52.48 -0.39 1.55 15 11 C 0.03 0.61 3.97 -17.29 -0.07 0.54 15 12 N -0.74 -16.70 11.60 55.56 0.64 -16.06 15 13 Si 1.06 18.49 30.02 -169.99 -5.10 13.38 15 14 H -0.27 -4.70 7.11 56.52 0.40 -4.30 15 15 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 16 H -0.27 -4.45 7.11 56.52 0.40 -4.05 15 17 C -0.22 -4.93 5.28 -37.66 -0.20 -5.13 15 18 S 0.11 2.29 19.88 -107.50 -2.14 0.15 15 19 C -0.21 -3.96 11.04 28.81 0.32 -3.64 15 20 C -0.14 -2.79 9.96 -38.82 -0.39 -3.18 15 21 C 0.01 0.27 5.99 -105.08 -0.63 -0.36 15 22 H 0.12 2.39 6.92 -52.48 -0.36 2.03 15 23 H 0.05 0.86 8.14 -51.93 -0.42 0.43 15 24 H 0.04 0.73 7.80 -51.93 -0.40 0.32 15 25 H 0.37 3.94 9.12 45.56 0.42 4.36 15 26 H 0.30 7.26 7.12 -40.82 -0.29 6.97 15 27 H 0.15 2.27 8.06 -52.49 -0.42 1.85 15 28 H 0.12 2.29 8.04 -52.49 -0.42 1.87 15 LS Contribution 267.28 15.07 4.03 4.03 Total: -1.00 -25.63 267.28 -6.81 -32.44 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -1.09 Total: 6.88 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -3.50 Total: -20.54 kcal Atomic # 7 Polarization: -27.96 SS G_CDS: 1.42 Total: -26.54 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.43 Total: -9.80 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.10 Total: 13.38 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.14 Total: 0.15 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -25.63 -6.81 -32.44 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.581 kcal (2) G-P(sol) polarization free energy of solvation -25.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds