Wall clock time and date at job start Mon Mar 30 2020 06:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39547 * 119.74299 * 109.87896 * 3 2 1 5 5 C 1.36218 * 120.73604 * 179.76154 * 4 3 2 6 6 C 1.50705 * 119.88201 * 180.26236 * 5 4 3 7 7 O 1.42892 * 109.47357 * 0.21293 * 6 5 4 8 8 C 1.40719 * 120.22850 * 0.47525 * 5 4 3 9 9 C 1.40521 * 119.95742 * 179.78424 * 8 5 4 10 10 H 1.08003 * 120.00277 * 322.82112 * 9 8 5 11 11 C 1.40226 * 120.00140 * 142.82841 * 9 8 5 12 12 N 1.30685 * 119.99438 * 332.23521 * 11 9 8 13 13 Si 1.86802 * 120.00262 * 152.23440 * 11 9 8 14 14 H 1.48503 * 109.46732 * 180.02562 * 13 11 9 15 15 H 1.48501 * 109.46941 * 299.99731 * 13 11 9 16 16 H 1.48494 * 109.46885 * 59.99857 * 13 11 9 17 17 C 1.42261 * 120.07795 * 359.51029 * 8 5 4 18 18 S 1.75902 * 130.56191 * 180.25227 * 17 8 5 19 19 C 1.75323 * 92.13471 * 179.97438 * 18 17 8 20 20 C 1.32120 * 111.22849 * 0.02562 * 19 18 17 21 21 C 1.39242 * 119.67824 * 0.24813 * 17 8 5 22 22 H 1.08003 * 119.63240 * 0.02562 * 4 3 2 23 23 H 1.09002 * 109.47273 * 120.22114 * 6 5 4 24 24 H 1.08999 * 109.46856 * 240.21358 * 6 5 4 25 25 H 0.96703 * 114.00462 * 179.97438 * 7 6 5 26 26 H 0.97000 * 119.99986 * 357.73973 * 12 11 9 27 27 H 1.07994 * 124.38384 * 180.02562 * 19 18 17 28 28 H 1.08000 * 122.54584 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 0.4129 -1.1394 5 6 4.6221 0.4262 -1.1600 6 6 5.3499 0.8807 -2.3989 7 8 4.4003 1.2475 -3.4017 8 6 5.3517 0.0126 -0.0300 9 6 6.7565 0.0243 -0.0590 10 1 7.2803 -0.2456 -0.9642 11 6 7.4786 0.3862 1.0873 12 7 6.9491 1.1985 1.9635 13 14 9.1970 -0.2928 1.3619 14 1 9.7408 0.2379 2.6378 15 1 9.1388 -1.7752 1.4279 16 1 10.0770 0.1186 0.2389 17 6 4.6687 -0.4116 1.1436 18 16 5.2919 -0.9702 2.6908 19 6 3.6766 -1.2018 3.3320 20 6 2.7570 -0.8802 2.4396 21 6 3.2765 -0.4203 1.1660 22 1 2.7098 0.7291 -2.0133 23 1 5.9748 1.7408 -2.1582 24 1 5.9759 0.0695 -2.7706 25 1 4.7990 1.5513 -4.2286 26 1 6.0702 1.5769 1.8049 27 1 3.4613 -1.5608 4.3275 28 1 1.6989 -0.9542 2.6431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396227934.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:18 Heat of formation + Delta-G solvation = -15.044503 kcal Electronic energy + Delta-G solvation = -16329.263310 eV Core-core repulsion = 13628.072943 eV Total energy + Delta-G solvation = -2701.190368 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.42036 -37.89665 -37.27733 -36.56889 -35.10497 -32.05352 -30.63905 -27.75594 -26.59230 -23.90494 -23.50672 -21.20790 -19.92847 -19.43297 -18.32302 -16.88681 -16.55815 -15.99253 -15.84582 -15.55935 -15.44647 -14.88770 -14.72564 -14.54754 -13.97153 -13.76214 -13.67049 -13.34075 -13.07575 -12.66455 -12.42254 -12.17064 -11.97112 -11.83836 -11.44008 -11.42606 -10.89577 -10.72391 -10.20183 -9.46679 -9.17277 -8.34270 -6.63439 -0.17736 0.57473 0.96840 1.42842 1.47009 1.56051 1.62148 1.82465 1.88325 2.09225 2.29661 2.74519 3.29327 3.39108 3.57034 3.86657 4.34825 4.42315 4.50265 4.69811 4.80649 4.82927 5.02472 5.11818 5.30624 5.33806 5.58851 5.64811 5.77574 5.91351 6.08338 6.48328 6.61856 6.76176 7.07200 7.84699 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.010429 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.530900 B = 2684.186595 C = 4095.730592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.299 3.701 3 C -0.182 4.182 4 C 0.005 3.995 5 C -0.217 4.217 6 C 0.157 3.843 7 O -0.588 6.588 8 C 0.128 3.872 9 C -0.502 4.502 10 H 0.102 0.898 11 C 0.006 3.994 12 N -0.752 5.752 13 Si 1.093 2.907 14 H -0.270 1.270 15 H -0.260 1.260 16 H -0.251 1.251 17 C -0.244 4.244 18 S 0.103 5.897 19 C -0.192 4.192 20 C -0.158 4.158 21 C -0.002 4.002 22 H 0.122 0.878 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.396 0.604 26 H 0.287 0.713 27 H 0.191 0.809 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.701 -2.033 -1.174 6.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.011 4.011 3 C -0.190 4.190 4 C -0.017 4.017 5 C -0.221 4.221 6 C 0.080 3.920 7 O -0.396 6.396 8 C 0.121 3.879 9 C -0.527 4.527 10 H 0.120 0.880 11 C -0.217 4.217 12 N -0.371 5.371 13 Si 0.910 3.090 14 H -0.194 1.194 15 H -0.184 1.184 16 H -0.175 1.175 17 C -0.359 4.359 18 S 0.368 5.632 19 C -0.327 4.327 20 C -0.190 4.190 21 C -0.013 4.013 22 H 0.139 0.861 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.246 0.754 26 H 0.100 0.900 27 H 0.208 0.792 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.195 -2.373 1.053 6.717 hybrid contribution -2.308 0.517 -1.998 3.096 sum 3.887 -1.856 -0.945 4.409 Atomic orbital electron populations 1.81059 1.12701 1.15188 1.10352 1.25924 0.92684 0.90953 0.91539 1.15331 0.82836 1.23935 0.96896 1.20058 0.94102 0.92938 0.94597 1.19270 0.92877 1.12189 0.97782 1.20337 0.88790 0.97661 0.85181 1.86373 1.37250 1.88374 1.27621 1.17057 0.93585 0.88496 0.88798 1.20925 0.91363 1.38694 1.01763 0.88028 1.28266 1.09656 0.93044 0.90733 1.70527 1.16923 1.15162 1.34511 0.83267 0.69484 0.77629 0.78604 1.19417 1.18423 1.17466 1.22729 0.95191 1.16855 1.01162 1.84006 1.05619 1.67642 1.05912 1.25710 0.97255 1.05467 1.04260 1.20935 1.00448 1.05170 0.92408 1.19074 0.91933 0.97375 0.92931 0.86052 0.93260 0.92771 0.75443 0.90026 0.79174 0.84572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -22.81 18.54 19.00 0.35 -22.45 15 2 C 0.30 13.03 14.96 88.33 1.32 14.35 15 3 C -0.18 -8.03 5.82 -20.58 -0.12 -8.15 15 4 C 0.00 0.20 8.96 22.12 0.20 0.40 15 5 C -0.22 -9.26 5.89 -19.73 -0.12 -9.37 15 6 C 0.16 5.49 6.33 71.24 0.45 5.94 15 7 O -0.59 -18.15 12.09 -148.98 -1.80 -19.95 15 8 C 0.13 5.80 5.01 -21.12 -0.11 5.69 15 9 C -0.50 -21.66 8.09 23.31 0.19 -21.48 15 10 H 0.10 4.10 7.35 -2.91 -0.02 4.08 15 11 C 0.01 0.26 3.97 85.35 0.34 0.60 15 12 N -0.75 -33.96 11.60 21.88 0.25 -33.70 15 13 Si 1.09 35.61 30.02 68.60 2.06 37.67 15 14 H -0.27 -8.88 7.11 99.48 0.71 -8.17 15 15 H -0.26 -8.14 7.11 99.48 0.71 -7.44 15 16 H -0.25 -7.32 7.11 99.48 0.71 -6.62 15 17 C -0.24 -11.04 5.28 23.51 0.12 -10.92 15 18 S 0.10 4.15 19.88 -56.49 -1.12 3.03 15 19 C -0.19 -6.71 11.04 66.84 0.74 -5.98 15 20 C -0.16 -6.11 9.96 23.03 0.23 -5.88 15 21 C 0.00 -0.10 5.99 -20.16 -0.12 -0.22 15 22 H 0.12 4.98 6.92 -2.91 -0.02 4.96 15 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.05 1.76 7.80 -2.39 -0.02 1.74 15 25 H 0.40 7.54 9.12 -74.06 -0.68 6.87 15 26 H 0.29 13.94 7.12 -92.71 -0.66 13.28 15 27 H 0.19 5.03 8.06 -2.91 -0.02 5.01 15 28 H 0.14 4.87 8.04 -2.91 -0.02 4.84 15 Total: -1.00 -53.72 267.28 3.53 -50.19 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.66 Total: 20.24 kcal Atomic # 6 Polarization: -38.14 SS G_CDS: 3.13 Total: -35.02 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.61 Total: -56.16 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -1.80 Total: -19.95 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.06 Total: 37.67 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -1.12 Total: 3.03 kcal Total: -53.72 3.53 -50.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396227934.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.147 kcal (2) G-P(sol) polarization free energy of solvation -53.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds