Wall clock time and date at job start Mon Mar 30 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39814 * 120.55742 * 82.98246 * 3 2 1 5 5 C 1.50704 * 119.70741 * 359.95535 * 4 3 2 6 6 O 1.42897 * 109.47259 * 180.33011 * 5 4 3 7 7 C 1.36933 * 120.59013 * 180.28653 * 4 3 2 8 8 C 1.41642 * 121.89008 * 359.41477 * 7 4 3 9 9 C 1.45433 * 128.61411 * 180.29834 * 8 7 4 10 10 C 1.31955 * 114.96536 * 179.97438 * 9 8 7 11 11 S 1.75295 * 111.30066 * 359.97438 * 10 9 8 12 12 C 1.39416 * 119.65085 * 0.25636 * 8 7 4 13 13 C 1.42239 * 119.88017 * 0.03454 * 12 8 7 14 14 C 1.40268 * 120.44868 * 179.97438 * 13 12 8 15 15 H 1.08003 * 119.99510 * 141.47293 * 14 13 12 16 16 C 1.40297 * 120.00284 * 321.47675 * 14 13 12 17 17 N 1.30648 * 119.99715 * 338.29778 * 16 14 13 18 18 Si 1.86797 * 120.00083 * 158.30300 * 16 14 13 19 19 H 1.48502 * 109.47136 * 90.00203 * 18 16 14 20 20 H 1.48506 * 109.46860 * 209.99608 * 18 16 14 21 21 H 1.48501 * 109.47326 * 329.99457 * 18 16 14 22 22 H 1.09009 * 109.47018 * 300.32906 * 5 4 3 23 23 H 1.08995 * 109.46915 * 60.32414 * 5 4 3 24 24 H 0.96708 * 113.99713 * 180.02562 * 6 5 4 25 25 H 1.08007 * 119.05471 * 179.68779 * 7 4 3 26 26 H 1.07999 * 122.51773 * 359.93941 * 9 8 7 27 27 H 1.07995 * 124.34433 * 180.02562 * 10 9 8 28 28 H 0.96999 * 119.99965 * 185.38673 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2789 -0.1461 -1.1949 5 6 2.5315 -0.3074 -2.4936 6 8 3.4652 -0.4466 -3.5664 7 6 4.6483 -0.1515 -1.1950 8 6 5.3972 0.0017 -0.0026 9 6 6.8416 0.0240 0.1654 10 6 7.2553 0.1840 1.4082 11 16 5.9042 0.3264 2.5158 12 6 4.7335 0.1580 1.2135 13 6 3.3116 0.1619 1.2493 14 6 2.6316 0.3178 2.4662 15 1 1.7296 0.9102 2.5087 16 6 3.1233 -0.2958 3.6282 17 7 3.9256 -1.3227 3.5351 18 14 2.6307 0.3553 5.3082 19 1 1.3975 -0.3348 5.7645 20 1 3.7268 0.1027 6.2778 21 1 2.3763 1.8156 5.2181 22 1 1.9017 -1.1956 -2.4425 23 1 1.9086 0.5703 -2.6656 24 1 3.0533 -0.5544 -4.4348 25 1 5.1723 -0.2716 -2.1318 26 1 7.5244 -0.0829 -0.6645 27 1 8.2931 0.2230 1.7046 28 1 4.2033 -1.7954 4.3353 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396228176.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:10 Heat of formation + Delta-G solvation = 7.301023 kcal Electronic energy + Delta-G solvation = -16247.452070 eV Core-core repulsion = 13547.230677 eV Total energy + Delta-G solvation = -2700.221393 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.42519 -36.43368 -35.56149 -34.55146 -33.33604 -30.48148 -28.87790 -25.94742 -25.35147 -22.77438 -21.16507 -19.43226 -18.06364 -17.37665 -16.79478 -15.61604 -15.30574 -14.54115 -14.48992 -14.25029 -13.17957 -13.09060 -12.84521 -12.77524 -12.12550 -12.09772 -11.83876 -11.64942 -11.43892 -11.32085 -11.03071 -10.73729 -10.46449 -10.25472 -10.08537 -9.78064 -9.48609 -9.11524 -8.36117 -7.37721 -7.27330 -6.44584 -4.83090 1.56049 2.47833 2.68716 2.81355 2.91782 2.96831 3.14177 3.27578 3.68384 3.89926 4.14768 4.33782 4.62330 5.12329 5.34028 5.41329 5.68007 5.85711 5.92476 6.03662 6.33920 6.57155 6.66327 6.75622 6.89211 7.02563 7.25813 7.41205 7.58733 7.75525 7.99229 8.01457 8.25362 8.39345 8.77434 9.70067 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.010239 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.947265 B = 2734.099972 C = 4139.035984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C 0.303 3.697 3 C -0.180 4.180 4 C -0.005 4.005 5 C 0.119 3.881 6 O -0.565 6.565 7 C -0.181 4.181 8 C -0.032 4.032 9 C -0.133 4.133 10 C -0.229 4.229 11 S 0.116 5.884 12 C -0.167 4.167 13 C 0.198 3.802 14 C -0.447 4.447 15 H 0.094 0.906 16 C 0.073 3.927 17 N -0.741 5.741 18 Si 0.905 3.095 19 H -0.264 1.264 20 H -0.267 1.267 21 H -0.253 1.253 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.372 0.628 25 H 0.115 0.885 26 H 0.125 0.875 27 H 0.148 0.852 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.997 1.263 -2.679 5.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.186 5.186 2 C -0.006 4.006 3 C -0.189 4.189 4 C -0.009 4.009 5 C 0.041 3.959 6 O -0.369 6.369 7 C -0.202 4.202 8 C -0.041 4.041 9 C -0.165 4.165 10 C -0.364 4.364 11 S 0.382 5.618 12 C -0.283 4.283 13 C 0.189 3.811 14 C -0.474 4.474 15 H 0.112 0.888 16 C -0.152 4.152 17 N -0.363 5.363 18 Si 0.728 3.272 19 H -0.189 1.189 20 H -0.191 1.191 21 H -0.176 1.176 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.218 0.782 25 H 0.133 0.867 26 H 0.143 0.857 27 H 0.165 0.835 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.841 1.380 -0.430 4.104 hybrid contribution 0.028 -0.228 -1.148 1.171 sum 3.869 1.152 -1.577 4.334 Atomic orbital electron populations 1.81028 1.12490 1.15180 1.09903 1.25537 0.92433 0.91258 0.91375 1.16312 0.83225 1.25829 0.93551 1.18730 0.93442 0.97940 0.90755 1.20902 0.90162 0.99321 0.85481 1.86511 1.36136 1.96495 1.17780 1.19719 0.91993 1.12961 0.95552 1.19166 0.91482 1.00010 0.93420 1.20852 0.93978 1.05025 0.96688 1.25304 1.03265 1.09276 0.98522 1.83776 0.93143 1.75221 1.09637 1.22532 0.96752 1.14627 0.94405 1.17498 0.87687 0.85263 0.90615 1.19556 1.09633 1.26802 0.91417 0.88784 1.26048 0.93035 0.94027 1.02104 1.69642 1.21475 1.11531 1.33635 0.86272 0.79655 0.81392 0.79917 1.18876 1.19116 1.17625 0.92966 0.93010 0.78211 0.86742 0.85701 0.83468 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -11.98 18.54 41.84 0.78 -11.21 15 2 C 0.30 7.07 13.53 -22.47 -0.30 6.77 15 3 C -0.18 -4.20 5.95 -104.15 -0.62 -4.82 15 4 C 0.00 -0.10 5.89 -104.50 -0.62 -0.71 15 5 C 0.12 2.06 6.44 36.01 0.23 2.29 15 6 O -0.56 -8.67 12.06 -35.23 -0.42 -9.09 15 7 C -0.18 -3.86 9.38 -38.76 -0.36 -4.22 15 8 C -0.03 -0.70 6.03 -105.30 -0.63 -1.33 15 9 C -0.13 -2.52 10.38 -38.63 -0.40 -2.92 15 10 C -0.23 -4.15 11.03 28.82 0.32 -3.83 15 11 S 0.12 2.42 19.87 -107.50 -2.14 0.28 15 12 C -0.17 -3.92 5.76 -37.61 -0.22 -4.14 15 13 C 0.20 4.88 5.54 -104.37 -0.58 4.30 15 14 C -0.45 -10.97 8.23 -38.05 -0.31 -11.29 15 15 H 0.09 2.31 7.74 -52.48 -0.41 1.91 15 16 C 0.07 1.67 4.24 -17.28 -0.07 1.59 15 17 N -0.74 -17.20 10.72 55.57 0.60 -16.60 15 18 Si 0.91 17.36 29.62 -169.99 -5.03 12.33 15 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 21 H -0.25 -4.86 7.11 56.52 0.40 -4.45 15 22 H 0.05 0.88 8.14 -51.92 -0.42 0.45 15 23 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.37 3.60 9.12 45.56 0.42 4.01 15 25 H 0.11 2.29 6.88 -52.48 -0.36 1.93 15 26 H 0.13 2.01 8.06 -52.49 -0.42 1.59 15 27 H 0.15 2.15 8.06 -52.49 -0.42 1.73 15 28 H 0.30 6.20 8.30 -40.82 -0.34 5.86 15 LS Contribution 268.93 15.07 4.05 4.05 Total: -1.00 -27.33 268.93 -6.92 -34.25 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -1.18 Total: 4.31 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -3.57 Total: -18.31 kcal Atomic # 7 Polarization: -29.18 SS G_CDS: 1.37 Total: -27.81 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -0.42 Total: -9.09 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Atomic # 16 Polarization: 2.42 SS G_CDS: -2.14 Total: 0.28 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -27.33 -6.92 -34.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228176.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.548 kcal (2) G-P(sol) polarization free energy of solvation -27.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds