Wall clock time and date at job start Mon Mar 30 2020 06:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39814 * 120.55742 * 82.98246 * 3 2 1 5 5 C 1.50704 * 119.70741 * 359.95535 * 4 3 2 6 6 O 1.42897 * 109.47259 * 180.33011 * 5 4 3 7 7 C 1.36933 * 120.59013 * 180.28653 * 4 3 2 8 8 C 1.41642 * 121.89008 * 359.41477 * 7 4 3 9 9 C 1.45433 * 128.61411 * 180.29834 * 8 7 4 10 10 C 1.31955 * 114.96536 * 179.97438 * 9 8 7 11 11 S 1.75295 * 111.30066 * 359.97438 * 10 9 8 12 12 C 1.39416 * 119.65085 * 0.25636 * 8 7 4 13 13 C 1.42239 * 119.88017 * 0.03454 * 12 8 7 14 14 C 1.40268 * 120.44868 * 179.97438 * 13 12 8 15 15 H 1.08003 * 119.99510 * 141.47293 * 14 13 12 16 16 C 1.40297 * 120.00284 * 321.47675 * 14 13 12 17 17 N 1.30648 * 119.99715 * 338.29778 * 16 14 13 18 18 Si 1.86797 * 120.00083 * 158.30300 * 16 14 13 19 19 H 1.48502 * 109.47136 * 90.00203 * 18 16 14 20 20 H 1.48506 * 109.46860 * 209.99608 * 18 16 14 21 21 H 1.48501 * 109.47326 * 329.99457 * 18 16 14 22 22 H 1.09009 * 109.47018 * 300.32906 * 5 4 3 23 23 H 1.08995 * 109.46915 * 60.32414 * 5 4 3 24 24 H 0.96708 * 113.99713 * 180.02562 * 6 5 4 25 25 H 1.08007 * 119.05471 * 179.68779 * 7 4 3 26 26 H 1.07999 * 122.51773 * 359.93941 * 9 8 7 27 27 H 1.07995 * 124.34433 * 180.02562 * 10 9 8 28 28 H 0.96999 * 119.99965 * 185.38673 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2789 -0.1461 -1.1949 5 6 2.5315 -0.3074 -2.4936 6 8 3.4652 -0.4466 -3.5664 7 6 4.6483 -0.1515 -1.1950 8 6 5.3972 0.0017 -0.0026 9 6 6.8416 0.0240 0.1654 10 6 7.2553 0.1840 1.4082 11 16 5.9042 0.3264 2.5158 12 6 4.7335 0.1580 1.2135 13 6 3.3116 0.1619 1.2493 14 6 2.6316 0.3178 2.4662 15 1 1.7296 0.9102 2.5087 16 6 3.1233 -0.2958 3.6282 17 7 3.9256 -1.3227 3.5351 18 14 2.6307 0.3553 5.3082 19 1 1.3975 -0.3348 5.7645 20 1 3.7268 0.1027 6.2778 21 1 2.3763 1.8156 5.2181 22 1 1.9017 -1.1956 -2.4425 23 1 1.9086 0.5703 -2.6656 24 1 3.0533 -0.5544 -4.4348 25 1 5.1723 -0.2716 -2.1318 26 1 7.5244 -0.0829 -0.6645 27 1 8.2931 0.2230 1.7046 28 1 4.2033 -1.7954 4.3353 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396228176.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:10 Heat of formation + Delta-G solvation = -8.963102 kcal Electronic energy + Delta-G solvation = -16248.157335 eV Core-core repulsion = 13547.230677 eV Total energy + Delta-G solvation = -2700.926658 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.04551 -37.78243 -37.29340 -36.26804 -34.92970 -32.15276 -30.47810 -27.66393 -26.87577 -24.37059 -22.82330 -21.00452 -19.68900 -19.03587 -18.18704 -17.28212 -16.88900 -16.06207 -15.90116 -15.76154 -14.77415 -14.65889 -14.52731 -14.47804 -13.85481 -13.60169 -13.44244 -13.40136 -13.11615 -12.93800 -12.67414 -12.22712 -12.00478 -11.76639 -11.65864 -11.37950 -10.98680 -10.70358 -10.02311 -9.05330 -8.96270 -8.09200 -6.62985 -0.10549 0.82135 1.12429 1.27822 1.34460 1.46094 1.54389 1.67853 2.05935 2.11017 2.41956 2.58892 3.35269 3.43428 3.58423 3.95992 4.27279 4.47092 4.55642 4.58286 4.73922 4.92616 5.05329 5.20397 5.27333 5.39589 5.54793 5.77990 5.95592 6.07271 6.25272 6.50445 6.63461 6.94177 6.99114 8.03282 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017991 B = 0.010239 C = 0.006763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.947265 B = 2734.099972 C = 4139.035984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C 0.309 3.691 3 C -0.203 4.203 4 C -0.011 4.011 5 C 0.127 3.873 6 O -0.572 6.572 7 C -0.184 4.184 8 C -0.043 4.043 9 C -0.142 4.142 10 C -0.208 4.208 11 S 0.097 5.903 12 C -0.200 4.200 13 C 0.175 3.825 14 C -0.478 4.478 15 H 0.079 0.921 16 C 0.047 3.953 17 N -0.762 5.762 18 Si 0.959 3.041 19 H -0.263 1.263 20 H -0.249 1.249 21 H -0.257 1.257 22 H 0.057 0.943 23 H 0.061 0.939 24 H 0.399 0.601 25 H 0.130 0.870 26 H 0.159 0.841 27 H 0.190 0.810 28 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 1.201 -3.046 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.202 5.202 2 C 0.001 3.999 3 C -0.213 4.213 4 C -0.015 4.015 5 C 0.050 3.950 6 O -0.380 6.380 7 C -0.205 4.205 8 C -0.053 4.053 9 C -0.174 4.174 10 C -0.343 4.343 11 S 0.363 5.637 12 C -0.316 4.316 13 C 0.167 3.833 14 C -0.505 4.505 15 H 0.097 0.903 16 C -0.176 4.176 17 N -0.385 5.385 18 Si 0.779 3.221 19 H -0.188 1.188 20 H -0.172 1.172 21 H -0.181 1.181 22 H 0.075 0.925 23 H 0.079 0.921 24 H 0.249 0.751 25 H 0.148 0.852 26 H 0.177 0.823 27 H 0.207 0.793 28 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.487 1.308 -0.837 5.703 hybrid contribution -0.399 -0.226 -1.145 1.234 sum 5.088 1.083 -1.983 5.567 Atomic orbital electron populations 1.81002 1.12711 1.16014 1.10442 1.25635 0.92505 0.90852 0.90923 1.16566 0.83223 1.27077 0.94419 1.19127 0.93865 0.96707 0.91848 1.20714 0.89816 0.99922 0.84571 1.86431 1.36212 1.96481 1.18913 1.19990 0.92160 1.12323 0.96024 1.19688 0.93340 0.99123 0.93151 1.21121 0.92815 1.05220 0.98194 1.25695 1.04134 1.07162 0.97302 1.83670 0.94065 1.75614 1.10348 1.22762 0.96832 1.16011 0.96034 1.17846 0.88829 0.85543 0.91126 1.19631 1.09901 1.28149 0.92788 0.90304 1.26598 0.92876 0.93739 1.04391 1.69647 1.21929 1.11999 1.34898 0.85490 0.79786 0.80393 0.76453 1.18804 1.17224 1.18065 0.92480 0.92068 0.75129 0.85204 0.82311 0.79334 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.06 18.54 19.01 0.35 -24.71 15 2 C 0.31 14.73 13.53 88.33 1.19 15.93 15 3 C -0.20 -9.70 5.95 -19.56 -0.12 -9.82 15 4 C -0.01 -0.47 5.89 -19.79 -0.12 -0.59 15 5 C 0.13 4.24 6.44 71.24 0.46 4.70 15 6 O -0.57 -16.13 12.06 -148.98 -1.80 -17.93 15 7 C -0.18 -7.64 9.38 22.80 0.21 -7.43 15 8 C -0.04 -1.86 6.03 -20.30 -0.12 -1.98 15 9 C -0.14 -5.00 10.38 23.25 0.24 -4.75 15 10 C -0.21 -6.92 11.03 66.94 0.74 -6.18 15 11 S 0.10 3.97 19.87 -56.49 -1.12 2.85 15 12 C -0.20 -9.46 5.76 23.55 0.14 -9.33 15 13 C 0.17 8.85 5.54 -19.70 -0.11 8.74 15 14 C -0.48 -24.22 8.23 23.26 0.19 -24.03 15 15 H 0.08 4.08 7.74 -2.91 -0.02 4.06 15 16 C 0.05 2.18 4.24 85.37 0.36 2.55 15 17 N -0.76 -35.58 10.72 21.89 0.23 -35.34 15 18 Si 0.96 35.58 29.62 68.60 2.03 37.61 15 19 H -0.26 -9.66 7.11 99.48 0.71 -8.96 15 20 H -0.25 -8.44 7.11 99.48 0.71 -7.73 15 21 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 22 H 0.06 1.85 8.14 -2.38 -0.02 1.83 15 23 H 0.06 1.93 8.14 -2.39 -0.02 1.91 15 24 H 0.40 6.53 9.12 -74.05 -0.68 5.85 15 25 H 0.13 4.92 6.88 -2.91 -0.02 4.90 15 26 H 0.16 4.44 8.06 -2.91 -0.02 4.42 15 27 H 0.19 4.62 8.06 -2.91 -0.02 4.60 15 28 H 0.30 12.70 8.30 -92.71 -0.77 11.93 15 Total: -1.00 -59.12 268.93 3.32 -55.80 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.55 Total: 13.92 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: 3.07 Total: -32.20 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.59 Total: -60.05 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -1.80 Total: -17.93 kcal Atomic # 14 Polarization: 35.58 SS G_CDS: 2.03 Total: 37.61 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.12 Total: 2.85 kcal Total: -59.12 3.32 -55.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228176.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.837 kcal (2) G-P(sol) polarization free energy of solvation -59.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds