Wall clock time and date at job start Mon Mar 30 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13610 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.33834 * 123.02145 * 294.96916 * 3 2 1 5 5 S 1.70033 * 112.19678 * 180.25543 * 4 3 2 6 6 C 1.75774 * 92.96846 * 359.69674 * 5 4 3 7 7 C 1.39168 * 109.85508 * 0.29731 * 6 5 4 8 8 C 1.40864 * 119.29519 * 179.77774 * 7 6 5 9 9 C 1.50698 * 119.57960 * 179.97438 * 8 7 6 10 10 O 1.42904 * 109.47153 * 180.02562 * 9 8 7 11 11 C 1.37974 * 120.83725 * 0.04631 * 8 7 6 12 12 C 1.37803 * 120.66748 * 359.95348 * 11 8 7 13 13 C 1.40431 * 119.91026 * 0.02562 * 12 11 8 14 14 C 1.40936 * 120.13155 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00046 * 204.89710 * 14 13 12 16 16 C 1.39942 * 120.00087 * 24.89288 * 14 13 12 17 17 N 1.30847 * 119.99940 * 17.89881 * 16 14 13 18 18 Si 1.86805 * 119.99856 * 197.89724 * 16 14 13 19 19 H 1.48498 * 109.47126 * 90.00169 * 18 16 14 20 20 H 1.48501 * 109.46909 * 210.00172 * 18 16 14 21 21 H 1.48500 * 109.47056 * 330.00146 * 18 16 14 22 22 H 1.08002 * 123.89810 * 359.97438 * 4 3 2 23 23 H 1.09004 * 109.47042 * 300.00184 * 9 8 7 24 24 H 1.08994 * 109.47713 * 60.00267 * 9 8 7 25 25 H 0.96702 * 113.99871 * 179.97438 * 10 9 8 26 26 H 1.08001 * 119.66346 * 179.97438 * 11 8 7 27 27 H 1.08000 * 120.04974 * 179.97438 * 12 11 8 28 28 H 0.97007 * 120.00094 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2976 -0.4727 1.0173 5 16 4.9676 -0.3308 0.7308 6 6 4.7270 0.3987 -0.8502 7 6 3.3657 0.5198 -1.1127 8 6 2.9467 1.0876 -2.3319 9 6 1.4742 1.2213 -2.6230 10 8 1.2951 1.8196 -3.9083 11 6 3.8674 1.5215 -3.2634 12 6 5.2192 1.4095 -3.0206 13 6 5.6699 0.8484 -1.8147 14 6 7.0514 0.7321 -1.5613 15 1 7.4134 -0.0207 -0.8767 16 6 7.9542 1.5920 -2.1968 17 7 7.5280 2.7050 -2.7369 18 14 9.7678 1.1509 -2.2740 19 1 10.0340 0.3644 -3.5052 20 1 10.5792 2.3945 -2.2960 21 1 10.1319 0.3432 -1.0823 22 1 2.8744 -0.8920 1.9181 23 1 1.0110 0.2346 -2.6142 24 1 1.0087 1.8479 -1.8622 25 1 0.3694 1.9363 -4.1623 26 1 3.5250 1.9536 -4.1922 27 1 5.9311 1.7520 -3.7570 28 1 8.1539 3.3013 -3.1772 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396228253.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:54 Heat of formation + Delta-G solvation = -8.191191 kcal Electronic energy + Delta-G solvation = -16085.279777 eV Core-core repulsion = 13384.386591 eV Total energy + Delta-G solvation = -2700.893186 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36826 -37.93554 -37.66652 -36.28412 -34.82472 -32.28114 -30.19580 -28.63299 -25.64750 -25.22394 -22.68312 -22.24454 -19.72606 -18.55896 -17.92918 -17.48943 -16.72346 -16.27631 -15.99109 -15.92881 -15.19020 -14.96294 -14.74131 -14.28853 -13.92462 -13.85264 -13.53410 -13.16153 -12.97131 -12.87554 -12.74213 -12.26789 -11.95862 -11.83467 -11.60560 -11.31465 -11.19852 -10.91291 -9.94008 -9.21078 -8.75992 -8.47151 -6.35301 -0.17229 0.78979 0.84318 1.01914 1.26411 1.43117 1.54074 1.56246 1.66767 2.19581 2.37787 2.71092 3.16582 3.47526 3.53281 3.82237 4.23261 4.40067 4.53334 4.59217 4.70732 4.83626 4.99726 5.18703 5.28288 5.47752 5.66742 5.90787 6.06446 6.17302 6.45527 6.56805 6.76953 6.83998 6.93543 8.23423 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.023163 B = 0.007618 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.535777 B = 3674.399194 C = 4797.987283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.301 3.699 3 C -0.083 4.083 4 C -0.156 4.156 5 S 0.222 5.778 6 C -0.267 4.267 7 C -0.015 4.015 8 C -0.221 4.221 9 C 0.155 3.845 10 O -0.579 6.579 11 C -0.055 4.055 12 C -0.205 4.205 13 C 0.130 3.870 14 C -0.474 4.474 15 H 0.090 0.910 16 C 0.040 3.960 17 N -0.806 5.806 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.269 1.269 21 H -0.251 1.251 22 H 0.208 0.792 23 H 0.038 0.962 24 H 0.035 0.965 25 H 0.393 0.607 26 H 0.108 0.892 27 H 0.110 0.890 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.231 -3.928 4.193 5.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.140 5.140 2 C -0.014 4.014 3 C -0.105 4.105 4 C -0.296 4.296 5 S 0.491 5.509 6 C -0.382 4.382 7 C -0.022 4.022 8 C -0.225 4.225 9 C 0.077 3.923 10 O -0.386 6.386 11 C -0.074 4.074 12 C -0.228 4.228 13 C 0.125 3.875 14 C -0.502 4.502 15 H 0.108 0.892 16 C -0.178 4.178 17 N -0.430 5.430 18 Si 0.801 3.199 19 H -0.188 1.188 20 H -0.194 1.194 21 H -0.174 1.174 22 H 0.225 0.775 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.242 0.758 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.960 -4.107 4.987 6.532 hybrid contribution -0.867 0.634 -1.273 1.665 sum -1.826 -3.474 3.714 5.403 Atomic orbital electron populations 1.81165 1.12033 1.11385 1.09422 1.25157 0.91916 0.92117 0.92209 1.15666 0.84814 1.12597 0.97378 1.25276 1.00481 1.01509 1.02383 1.82323 0.99104 1.58963 1.10516 1.22863 0.95668 1.18017 1.01607 1.18329 0.91153 0.99466 0.93267 1.18922 0.94025 1.13446 0.96081 1.20409 0.93090 0.94815 0.83975 1.86443 1.32616 1.84193 1.35379 1.20451 0.92682 0.96544 0.97756 1.21110 0.94252 1.09378 0.98021 1.17260 0.92468 0.88600 0.89158 1.19834 0.91110 1.15433 1.23812 0.89174 1.26798 1.06253 0.92840 0.91935 1.69887 1.39845 1.07826 1.25397 0.85195 0.75284 0.79060 0.80320 1.18777 1.19382 1.17399 0.77489 0.94392 0.94720 0.75791 0.87380 0.87248 0.89565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.31 18.54 19.00 0.35 -15.96 15 2 C 0.30 10.35 12.83 88.33 1.13 11.48 15 3 C -0.08 -2.93 5.82 -20.90 -0.12 -3.05 15 4 C -0.16 -4.45 10.55 66.82 0.70 -3.74 15 5 S 0.22 7.29 22.58 -56.49 -1.28 6.01 15 6 C -0.27 -11.84 6.35 23.47 0.15 -11.69 15 7 C -0.01 -0.64 5.99 -20.28 -0.12 -0.76 15 8 C -0.22 -9.90 5.95 -19.28 -0.11 -10.01 15 9 C 0.15 5.89 5.87 71.24 0.42 6.31 15 10 O -0.58 -20.22 12.08 -148.98 -1.80 -22.02 15 11 C -0.06 -2.65 9.31 22.10 0.21 -2.45 15 12 C -0.20 -10.48 8.67 22.70 0.20 -10.28 15 13 C 0.13 6.53 5.59 -21.11 -0.12 6.41 15 14 C -0.47 -22.84 8.83 23.34 0.21 -22.64 15 15 H 0.09 4.06 7.76 -2.91 -0.02 4.04 15 16 C 0.04 1.83 5.12 85.25 0.44 2.27 15 17 N -0.81 -39.14 10.97 21.83 0.24 -38.90 15 18 Si 0.98 34.50 29.60 68.60 2.03 36.53 15 19 H -0.26 -9.12 7.11 99.48 0.71 -8.42 15 20 H -0.27 -9.12 7.11 99.48 0.71 -8.41 15 21 H -0.25 -8.41 7.11 99.48 0.71 -7.70 15 22 H 0.21 3.98 8.06 -2.91 -0.02 3.96 15 23 H 0.04 1.40 7.58 -2.38 -0.02 1.38 15 24 H 0.03 1.30 7.58 -2.39 -0.02 1.29 15 25 H 0.39 9.11 9.12 -74.06 -0.68 8.43 15 26 H 0.11 5.02 6.93 -2.91 -0.02 5.00 15 27 H 0.11 5.81 6.16 -2.91 -0.02 5.79 15 28 H 0.29 12.84 8.30 -92.70 -0.77 12.07 15 Total: -1.00 -58.14 267.47 3.08 -55.06 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.56 Total: 17.43 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 2.98 Total: -38.16 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: 0.59 Total: -54.86 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.80 Total: -22.02 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Atomic # 16 Polarization: 7.29 SS G_CDS: -1.28 Total: 6.01 kcal Total: -58.14 3.08 -55.06 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228253.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.868 kcal (2) G-P(sol) polarization free energy of solvation -58.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds