Wall clock time and date at job start Mon Mar 30 2020 06:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35716 * 116.99921 * 2 1 4 4 C 1.37346 * 119.99313 * 359.97269 * 3 2 1 5 5 C 1.40265 * 121.09728 * 180.02562 * 4 3 2 6 6 S 1.76063 * 130.07587 * 180.02562 * 5 4 3 7 7 C 1.75260 * 92.21329 * 179.97438 * 6 5 4 8 8 C 1.31971 * 111.43090 * 0.02562 * 7 6 5 9 9 C 1.40113 * 120.37402 * 0.02890 * 5 4 3 10 10 C 1.42085 * 119.11799 * 359.97438 * 9 5 4 11 11 C 1.43194 * 120.08897 * 180.02562 * 10 9 5 12 12 N 5.88560 * 152.62989 * 0.02562 * 2 1 3 13 13 C 1.41522 * 119.81653 * 359.97438 * 10 9 5 14 14 C 1.40352 * 120.20877 * 180.29632 * 13 10 9 15 15 H 1.07999 * 120.00081 * 38.92652 * 14 13 10 16 16 C 1.40293 * 119.99700 * 218.92726 * 14 13 10 17 17 N 1.30671 * 120.00165 * 20.21119 * 16 14 13 18 18 Si 1.86805 * 119.99544 * 200.20639 * 16 14 13 19 19 H 1.48498 * 109.47086 * 60.00422 * 18 16 14 20 20 H 1.48498 * 109.46922 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47324 * 300.00327 * 18 16 14 22 22 H 1.08999 * 109.47182 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47183 * 300.00680 * 1 2 3 24 24 H 1.08999 * 109.47247 * 59.99906 * 1 2 3 25 25 H 1.08002 * 119.45478 * 0.02626 * 4 3 2 26 26 H 1.08003 * 124.28898 * 180.02562 * 7 6 5 27 27 H 1.07997 * 122.53644 * 180.02562 * 8 7 6 28 28 H 0.97004 * 119.99507 * 183.79491 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2969 2.3610 -0.0006 5 6 1.9095 3.6228 -0.0011 6 16 1.1925 5.2309 -0.0013 7 6 2.7645 6.0058 -0.0013 8 6 3.7402 5.1172 -0.0017 9 6 3.3063 3.7323 -0.0017 10 6 4.0925 2.5488 -0.0012 11 6 5.5218 2.6364 -0.0012 12 7 6.6557 2.7058 0.0012 13 6 3.4592 1.2832 0.0005 14 6 4.2278 0.1088 0.0073 15 1 5.1300 0.0574 0.5986 16 6 3.8240 -0.9981 -0.7542 17 7 2.9947 -0.8379 -1.7512 18 14 4.4720 -2.7012 -0.3426 19 1 4.0804 -3.0579 1.0447 20 1 3.8985 -3.6911 -1.2894 21 1 5.9526 -2.7083 -0.4564 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 0.2190 2.2941 -0.0006 26 1 2.9157 7.0752 -0.0009 27 1 4.7827 5.3992 -0.0013 28 1 2.6725 -1.6096 -2.2428 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396228374.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:59 Heat of formation + Delta-G solvation = 28.501668 kcal Electronic energy + Delta-G solvation = -16422.738761 eV Core-core repulsion = 13723.436697 eV Total energy + Delta-G solvation = -2699.302064 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.14810 -37.17997 -35.23326 -34.41411 -32.94641 -30.33415 -28.47484 -26.65783 -25.56048 -22.48433 -22.17968 -19.89346 -18.67252 -17.32949 -16.18655 -15.50747 -15.38268 -15.05035 -14.75505 -14.23339 -13.64388 -13.02513 -12.89012 -12.57783 -12.16771 -11.96719 -11.93677 -11.69608 -11.44612 -11.27563 -11.11039 -10.87819 -10.86175 -10.47866 -10.33915 -9.74939 -9.56119 -9.15609 -8.49075 -7.30984 -7.02447 -6.87662 -4.68247 1.53078 2.18479 2.35870 2.77888 2.96808 2.97920 3.02922 3.20100 3.79439 3.87929 4.02633 4.33954 4.49824 5.22276 5.35382 5.41386 5.66392 5.75166 5.81581 5.96317 6.06875 6.24615 6.39543 6.50529 6.74500 6.84992 7.02615 7.19401 7.39752 7.52460 7.98728 8.07551 8.45447 8.63998 8.84361 9.86643 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022865 B = 0.008524 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.280301 B = 3284.106611 C = 4361.802831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.276 6.276 3 C 0.134 3.866 4 C -0.169 4.169 5 C -0.180 4.180 6 S 0.026 5.974 7 C -0.208 4.208 8 C -0.114 4.114 9 C -0.021 4.021 10 C -0.143 4.143 11 C 0.307 3.693 12 N -0.505 5.505 13 C 0.150 3.850 14 C -0.434 4.434 15 H 0.090 0.910 16 C 0.089 3.911 17 N -0.742 5.742 18 Si 0.911 3.089 19 H -0.259 1.259 20 H -0.275 1.275 21 H -0.263 1.263 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.046 0.954 25 H 0.110 0.890 26 H 0.153 0.847 27 H 0.129 0.871 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 2.098 1.657 7.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.187 6.187 3 C 0.085 3.915 4 C -0.193 4.193 5 C -0.295 4.295 6 S 0.286 5.714 7 C -0.342 4.342 8 C -0.146 4.146 9 C -0.030 4.030 10 C -0.152 4.152 11 C -0.002 4.002 12 N -0.185 5.185 13 C 0.143 3.857 14 C -0.462 4.462 15 H 0.108 0.892 16 C -0.136 4.136 17 N -0.363 5.363 18 Si 0.734 3.266 19 H -0.183 1.183 20 H -0.200 1.200 21 H -0.188 1.188 22 H 0.103 0.897 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.128 0.872 26 H 0.171 0.829 27 H 0.147 0.853 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.951 2.493 1.412 7.518 hybrid contribution 0.794 -1.097 0.018 1.354 sum -6.157 1.397 1.430 6.473 Atomic orbital electron populations 1.22859 0.81553 1.02282 1.00173 1.86246 1.18217 1.26463 1.87800 1.18895 0.91776 0.82867 0.97915 1.19962 0.98044 0.90031 1.11215 1.21468 0.94810 0.95206 1.17984 1.83401 1.08620 0.97811 1.81539 1.24671 0.95689 1.02282 1.11546 1.20899 0.99455 0.91496 1.02725 1.18645 0.91343 0.91287 1.01724 1.15238 0.83247 0.91189 1.25553 1.25411 0.92349 0.91183 0.91291 1.81009 1.12375 1.10036 1.15064 1.16514 0.88279 0.91328 0.89547 1.19441 1.08545 0.95800 1.22373 0.89216 1.25837 0.93744 1.01351 0.92696 1.69616 1.21368 1.34214 1.11068 0.86290 0.80194 0.80156 0.79955 1.18315 1.20010 1.18778 0.89724 0.93961 0.93554 0.87188 0.82909 0.85306 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.80 101.05 0.99 1.42 15 2 O -0.28 -5.80 7.36 -18.85 -0.14 -5.94 15 3 C 0.13 3.01 6.15 -38.62 -0.24 2.77 15 4 C -0.17 -3.47 9.04 -39.14 -0.35 -3.82 15 5 C -0.18 -3.72 6.49 -38.12 -0.25 -3.97 15 6 S 0.03 0.45 23.24 -107.50 -2.50 -2.05 15 7 C -0.21 -3.44 11.02 28.82 0.32 -3.12 15 8 C -0.11 -2.15 9.94 -38.76 -0.39 -2.54 15 9 C -0.02 -0.46 5.99 -104.99 -0.63 -1.09 15 10 C -0.14 -3.39 5.86 -105.25 -0.62 -4.01 15 11 C 0.31 7.40 13.86 -22.47 -0.31 7.08 15 12 N -0.51 -12.35 18.54 41.84 0.78 -11.58 15 13 C 0.15 3.65 5.37 -106.57 -0.57 3.08 15 14 C -0.43 -10.69 8.05 -38.01 -0.31 -11.00 15 15 H 0.09 2.22 7.63 -52.49 -0.40 1.82 15 16 C 0.09 2.05 4.39 -17.27 -0.08 1.97 15 17 N -0.74 -17.32 11.25 55.57 0.62 -16.70 15 18 Si 0.91 17.63 29.61 -169.99 -5.03 12.60 15 19 H -0.26 -4.97 7.11 56.52 0.40 -4.57 15 20 H -0.28 -5.11 7.11 56.52 0.40 -4.71 15 21 H -0.26 -5.19 7.11 56.52 0.40 -4.79 15 22 H 0.08 1.12 8.14 -51.93 -0.42 0.70 15 23 H 0.04 0.59 7.64 -51.93 -0.40 0.20 15 24 H 0.05 0.70 7.64 -51.93 -0.40 0.30 15 25 H 0.11 1.97 6.19 -52.49 -0.32 1.65 15 26 H 0.15 2.00 8.06 -52.48 -0.42 1.58 15 27 H 0.13 2.29 8.03 -52.49 -0.42 1.87 15 28 H 0.29 6.15 8.30 -40.82 -0.34 5.81 15 LS Contribution 268.92 15.07 4.05 4.05 Total: -1.00 -26.40 268.92 -6.57 -32.97 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: -1.92 Total: -0.16 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -2.43 Total: -13.20 kcal Atomic # 7 Polarization: -29.68 SS G_CDS: 1.40 Total: -28.27 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.14 Total: -5.94 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -2.50 Total: -2.05 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.40 -6.57 -32.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228374.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.469 kcal (2) G-P(sol) polarization free energy of solvation -26.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds