Wall clock time and date at job start Mon Mar 30 2020 06:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35455 * 116.99561 * 2 1 4 4 C 1.40161 * 120.23146 * 268.64851 * 3 2 1 5 5 C 1.43207 * 119.84854 * 0.02562 * 4 3 2 6 6 N 3.52406 * 96.94069 * 280.83587 * 2 1 3 7 7 C 1.38995 * 120.30385 * 180.02562 * 4 3 2 8 8 C 1.41147 * 120.91471 * 0.04284 * 7 4 3 9 9 C 1.45577 * 128.88844 * 179.97438 * 8 7 4 10 10 C 1.31804 * 114.90365 * 179.97438 * 9 8 7 11 11 S 1.75287 * 111.36389 * 359.97438 * 10 9 8 12 12 C 1.39499 * 119.31015 * 359.95921 * 8 7 4 13 13 C 1.40752 * 120.22771 * 88.67542 * 3 2 1 14 14 C 1.40792 * 120.03497 * 359.95096 * 13 3 2 15 15 H 1.08004 * 119.99646 * 40.39918 * 14 13 3 16 16 C 1.39849 * 120.00302 * 220.40703 * 14 13 3 17 17 N 1.30945 * 120.00277 * 20.42070 * 16 14 13 18 18 Si 1.86807 * 119.99639 * 200.42987 * 16 14 13 19 19 H 1.48499 * 109.47245 * 89.99796 * 18 16 14 20 20 H 1.48503 * 109.46650 * 209.99216 * 18 16 14 21 21 H 1.48496 * 109.47412 * 329.99512 * 18 16 14 22 22 H 1.09003 * 109.47262 * 60.00034 * 1 2 3 23 23 H 1.09007 * 109.47064 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47341 * 299.99622 * 1 2 3 25 25 H 1.07993 * 119.54368 * 180.02562 * 7 4 3 26 26 H 1.08008 * 122.54525 * 359.97438 * 9 8 7 27 27 H 1.07993 * 124.32129 * 180.02562 * 10 9 8 28 28 H 0.97004 * 120.00334 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2070 0.0000 4 6 2.3896 1.8228 -1.2107 5 6 2.0910 1.1733 -2.4515 6 7 1.8548 0.6577 -3.4359 7 6 3.0211 3.0610 -1.2124 8 6 3.3268 3.7208 -0.0027 9 6 3.9783 5.0073 0.1974 10 6 4.1273 5.3638 1.4575 11 16 3.4792 4.1516 2.5452 12 6 2.9876 3.1179 1.2087 13 6 2.3404 1.8511 1.2158 14 6 1.9973 1.2421 2.4380 15 1 2.1318 0.1784 2.5677 16 6 1.4823 2.0146 3.4839 17 7 0.9473 3.1831 3.2329 18 14 1.5577 1.3793 5.2390 19 1 2.8277 1.8191 5.8705 20 1 0.4088 1.9184 6.0102 21 1 1.4964 -0.1044 5.2315 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 3.2816 3.5246 -2.1523 26 1 4.3139 5.6226 -0.6243 27 1 4.5890 6.2857 1.7789 28 1 0.5904 3.7191 3.9584 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396228610.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:24:26 Heat of formation + Delta-G solvation = 13.189523 kcal Electronic energy + Delta-G solvation = -16484.809212 eV Core-core repulsion = 13784.843164 eV Total energy + Delta-G solvation = -2699.966048 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60696 -38.42360 -37.53815 -36.07031 -34.63850 -32.00316 -29.81564 -27.98415 -26.94648 -24.73775 -23.26131 -21.77695 -19.93459 -18.47853 -18.10445 -17.49777 -17.08677 -16.50940 -16.22772 -15.31299 -14.85697 -14.69063 -14.48041 -14.36011 -14.06954 -13.95208 -13.60030 -13.38621 -13.14010 -12.93688 -12.70015 -12.42976 -12.19487 -11.73052 -11.53093 -11.34379 -10.88404 -10.50457 -10.08462 -9.04946 -8.83733 -8.07187 -6.45292 0.00900 0.24195 1.12814 1.33500 1.42486 1.51415 1.65378 1.70162 1.72490 2.12763 2.22058 2.70176 3.02252 3.06544 3.52781 4.14074 4.36907 4.48956 4.61298 4.66145 4.78369 4.87572 4.97566 5.10324 5.21088 5.28972 5.45874 5.63100 5.82447 5.91710 6.27406 6.50935 6.53336 6.79770 7.03655 8.24242 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.017621 B = 0.011049 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.646128 B = 2533.579536 C = 3926.848523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.337 6.337 3 C 0.008 3.992 4 C -0.030 4.030 5 C 0.293 3.707 6 N -0.470 5.470 7 C -0.121 4.121 8 C -0.077 4.077 9 C -0.129 4.129 10 C -0.216 4.216 11 S 0.099 5.901 12 C -0.162 4.162 13 C 0.112 3.888 14 C -0.480 4.480 15 H 0.079 0.921 16 C 0.047 3.953 17 N -0.789 5.789 18 Si 0.955 3.045 19 H -0.257 1.257 20 H -0.266 1.266 21 H -0.263 1.263 22 H 0.029 0.971 23 H 0.104 0.896 24 H 0.038 0.962 25 H 0.143 0.857 26 H 0.165 0.835 27 H 0.189 0.811 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.604 4.739 1.894 5.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.254 6.254 3 C -0.044 4.044 4 C -0.036 4.036 5 C -0.020 4.020 6 N -0.147 5.147 7 C -0.145 4.145 8 C -0.085 4.085 9 C -0.159 4.159 10 C -0.350 4.350 11 S 0.364 5.636 12 C -0.279 4.279 13 C 0.106 3.894 14 C -0.509 4.509 15 H 0.097 0.903 16 C -0.171 4.171 17 N -0.414 5.414 18 Si 0.776 3.224 19 H -0.182 1.182 20 H -0.190 1.190 21 H -0.187 1.187 22 H 0.048 0.952 23 H 0.123 0.877 24 H 0.056 0.944 25 H 0.161 0.839 26 H 0.183 0.817 27 H 0.206 0.794 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.127 3.952 2.091 4.952 hybrid contribution -0.321 0.058 -0.385 0.505 sum 1.806 4.011 1.706 4.718 Atomic orbital electron populations 1.22910 0.80152 1.02899 0.99491 1.85845 1.19881 1.25527 1.94108 1.18416 1.05165 0.90561 0.90209 1.15987 1.06784 0.95556 0.85273 1.25812 0.92048 0.91962 0.92224 1.81066 1.11087 1.10181 1.12363 1.20372 1.04120 0.93003 0.96963 1.19347 1.01345 0.95485 0.92365 1.21049 1.02049 0.94884 0.97959 1.25640 1.06774 1.05128 0.97437 1.83865 1.57511 1.12897 1.09287 1.23029 1.07102 1.01811 0.95979 1.17175 0.90358 0.89135 0.92744 1.19354 1.38820 0.96453 0.96264 0.90291 1.26368 0.92495 0.94290 1.03983 1.69843 1.23968 1.10867 1.36731 0.85555 0.79504 0.79915 0.77428 1.18175 1.19027 1.18657 0.95223 0.87734 0.94353 0.83943 0.81738 0.79381 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 11.12 113.37 1.26 2.81 15 2 O -0.34 -15.40 9.26 -87.53 -0.81 -16.21 15 3 C 0.01 0.36 5.74 23.35 0.13 0.49 15 4 C -0.03 -1.27 5.73 -21.38 -0.12 -1.40 15 5 C 0.29 12.01 14.83 88.33 1.31 13.32 15 6 N -0.47 -19.50 18.54 19.01 0.35 -19.15 15 7 C -0.12 -4.63 9.77 23.17 0.23 -4.40 15 8 C -0.08 -3.07 6.02 -20.37 -0.12 -3.19 15 9 C -0.13 -4.14 10.39 23.39 0.24 -3.90 15 10 C -0.22 -6.75 11.02 67.05 0.74 -6.02 15 11 S 0.10 3.91 19.97 -56.49 -1.13 2.78 15 12 C -0.16 -7.33 5.74 23.57 0.14 -7.20 15 13 C 0.11 5.49 5.35 -21.04 -0.11 5.38 15 14 C -0.48 -23.63 8.39 23.28 0.20 -23.43 15 15 H 0.08 3.98 7.92 -2.91 -0.02 3.95 15 16 C 0.05 2.15 4.25 85.22 0.36 2.51 15 17 N -0.79 -36.45 10.83 21.82 0.24 -36.22 15 18 Si 0.95 35.36 29.61 68.60 2.03 37.39 15 19 H -0.26 -9.28 7.11 99.48 0.71 -8.57 15 20 H -0.27 -9.34 7.11 99.48 0.71 -8.64 15 21 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 22 H 0.03 1.10 8.14 -2.39 -0.02 1.08 15 23 H 0.10 3.33 8.14 -2.38 -0.02 3.31 15 24 H 0.04 1.57 8.14 -2.39 -0.02 1.55 15 25 H 0.14 4.47 8.06 -2.91 -0.02 4.44 15 26 H 0.17 4.00 8.06 -2.91 -0.02 3.98 15 27 H 0.19 4.32 8.06 -2.91 -0.02 4.30 15 28 H 0.30 12.46 8.30 -92.70 -0.77 11.69 15 Total: -1.00 -54.53 272.70 6.13 -48.40 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.20 Total: 8.02 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.25 Total: -25.01 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: 0.59 Total: -55.37 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.81 Total: -16.21 kcal Atomic # 14 Polarization: 35.36 SS G_CDS: 2.03 Total: 37.39 kcal Atomic # 16 Polarization: 3.91 SS G_CDS: -1.13 Total: 2.78 kcal Total: -54.53 6.13 -48.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228610.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.591 kcal (2) G-P(sol) polarization free energy of solvation -54.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds