Wall clock time and date at job start Mon Mar 30 2020 06:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39040 * 120.04061 * 279.42180 * 3 2 1 5 5 C 1.40163 * 120.04495 * 180.02562 * 4 3 2 6 6 C 1.46705 * 129.47310 * 179.97438 * 5 4 3 7 7 C 1.40746 * 123.30240 * 0.04962 * 6 5 4 8 8 H 1.08000 * 120.00302 * 22.41697 * 7 6 5 9 9 C 1.39767 * 120.00190 * 202.41713 * 7 6 5 10 10 N 1.31046 * 119.99367 * 11.08650 * 9 7 6 11 11 Si 1.86794 * 120.00008 * 191.09376 * 9 7 6 12 12 H 1.48495 * 109.47453 * 89.99660 * 11 9 7 13 13 H 1.48504 * 109.46927 * 209.99592 * 11 9 7 14 14 H 1.48500 * 109.47322 * 329.99220 * 11 9 7 15 15 C 1.36411 * 113.39335 * 180.02562 * 6 5 4 16 16 S 1.69951 * 112.02689 * 0.02562 * 15 6 5 17 17 C 1.39618 * 119.32582 * 0.02562 * 5 4 3 18 18 C 1.40049 * 119.81771 * 359.97438 * 17 5 4 19 19 C 1.50696 * 119.64561 * 179.97438 * 18 17 5 20 20 O 1.42896 * 109.47172 * 179.97438 * 19 18 17 21 21 C 1.36220 * 120.71365 * 0.27147 * 18 17 5 22 22 H 1.07997 * 119.97682 * 359.97438 * 4 3 2 23 23 H 0.97001 * 119.99572 * 180.02562 * 10 9 7 24 24 H 1.08000 * 123.98426 * 179.97438 * 15 6 5 25 25 H 1.09001 * 109.46747 * 59.99905 * 19 18 17 26 26 H 1.09004 * 109.47054 * 299.99822 * 19 18 17 27 27 H 0.96703 * 113.99991 * 180.02562 * 20 19 18 28 28 H 1.07994 * 119.91153 * 179.73434 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2641 -0.1961 1.1874 5 6 4.6657 -0.1949 1.1876 6 6 5.5983 -0.3793 2.3049 7 6 5.1816 -0.6004 3.6310 8 1 4.1964 -0.9963 3.8285 9 6 6.0427 -0.3077 4.6922 10 7 7.1435 0.3693 4.4750 11 14 5.6244 -0.8815 6.4199 12 1 6.2037 -2.2296 6.6477 13 1 6.1879 0.0729 7.4084 14 1 4.1491 -0.9436 6.5773 15 6 6.9091 -0.3159 1.9325 16 16 7.0852 -0.0382 0.2651 17 6 5.3495 0.0057 -0.0130 18 6 4.6312 0.2022 -1.1991 19 6 5.3733 0.4189 -2.4927 20 8 4.4352 0.5941 -3.5563 21 6 3.2690 0.2055 -1.1951 22 1 2.7245 -0.3490 2.1103 23 1 7.7414 0.5721 5.2115 24 1 7.7372 -0.4281 2.6166 25 1 6.0008 -0.4476 -2.7011 26 1 5.9979 1.3083 -2.4086 27 1 4.8434 0.7384 -4.4210 28 1 2.7282 0.3625 -2.1166 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396228928.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:37 Heat of formation + Delta-G solvation = 5.752430 kcal Electronic energy + Delta-G solvation = -15807.654471 eV Core-core repulsion = 13107.365926 eV Total energy + Delta-G solvation = -2700.288545 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.23909 -36.80081 -36.25136 -34.84088 -32.45106 -31.42861 -28.49055 -26.62401 -25.35914 -23.50176 -21.61501 -19.80581 -17.96122 -17.07783 -16.81227 -16.35551 -15.31068 -14.89359 -14.69085 -14.14797 -13.92137 -13.53505 -13.17802 -12.91487 -12.44403 -12.36184 -12.05878 -11.57677 -11.44387 -11.41485 -11.05128 -10.75700 -10.65783 -10.32263 -10.13922 -10.01023 -9.57153 -9.29989 -8.58033 -7.59373 -6.91561 -6.76908 -4.44543 1.22996 1.69334 2.59037 2.89893 3.04506 3.05235 3.07410 3.19315 3.60778 3.77008 3.90542 4.27704 4.35534 4.36860 5.14872 5.16185 5.45879 5.48694 5.60242 5.77551 6.02998 6.10516 6.58189 6.63661 6.76886 6.85201 7.06292 7.26415 7.56603 7.65457 7.84425 7.89032 8.32344 8.64452 8.75879 10.16586 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.007233 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.634209 B = 3870.450478 C = 5188.359010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.276 3.724 3 C -0.071 4.071 4 C -0.011 4.011 5 C -0.067 4.067 6 C 0.085 3.915 7 C -0.433 4.433 8 H 0.078 0.922 9 C 0.069 3.931 10 N -0.796 5.796 11 Si 0.914 3.086 12 H -0.269 1.269 13 H -0.278 1.278 14 H -0.263 1.263 15 C -0.357 4.357 16 S 0.066 5.934 17 C -0.120 4.120 18 C -0.075 4.075 19 C 0.121 3.879 20 O -0.570 6.570 21 C -0.055 4.055 22 H 0.130 0.870 23 H 0.279 0.721 24 H 0.166 0.834 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.379 0.621 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.308 -0.073 -8.227 8.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.038 4.038 3 C -0.079 4.079 4 C -0.034 4.034 5 C -0.078 4.078 6 C 0.076 3.924 7 C -0.466 4.466 8 H 0.096 0.904 9 C -0.147 4.147 10 N -0.423 5.423 11 Si 0.738 3.262 12 H -0.194 1.194 13 H -0.203 1.203 14 H -0.187 1.187 15 C -0.493 4.493 16 S 0.331 5.669 17 C -0.237 4.237 18 C -0.082 4.082 19 C 0.044 3.956 20 O -0.375 6.375 21 C -0.078 4.078 22 H 0.147 0.853 23 H 0.090 0.910 24 H 0.183 0.817 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.226 0.774 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.710 0.089 -8.397 8.428 hybrid contribution -0.361 -0.225 1.542 1.600 sum 0.349 -0.136 -6.855 6.865 Atomic orbital electron populations 1.81154 1.12207 1.11046 1.08372 1.25751 0.92635 0.92547 0.92825 1.15665 0.83845 1.13101 0.95273 1.20925 0.92681 0.93712 0.96096 1.19532 0.92880 1.01973 0.93424 1.17259 0.88980 0.94680 0.91440 1.18986 1.01053 1.37199 0.89327 0.90424 1.25790 0.94533 0.93006 1.01395 1.69820 1.10271 1.28134 1.34027 0.86210 0.79899 0.79270 0.80792 1.19373 1.20308 1.18660 1.24420 1.01319 1.28753 0.94822 1.81870 0.99882 1.76782 1.08335 1.22688 0.99159 1.06056 0.95780 1.18446 0.93043 1.04783 0.91878 1.20835 0.89971 1.00008 0.84786 1.86437 1.36296 1.95656 1.19104 1.20207 0.92996 0.98320 0.96280 0.85251 0.91014 0.81707 0.92240 0.92202 0.77419 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -8.41 18.54 41.84 0.78 -7.63 15 2 C 0.28 4.85 15.32 -22.48 -0.34 4.50 15 3 C -0.07 -1.24 5.72 -106.99 -0.61 -1.85 15 4 C -0.01 -0.22 9.57 -38.56 -0.37 -0.59 15 5 C -0.07 -1.46 6.02 -105.24 -0.63 -2.09 15 6 C 0.08 2.07 5.69 -106.19 -0.60 1.47 15 7 C -0.43 -10.74 9.07 -38.06 -0.35 -11.09 15 8 H 0.08 1.83 7.69 -52.49 -0.40 1.43 15 9 C 0.07 1.66 5.36 -17.32 -0.09 1.57 15 10 N -0.80 -19.75 10.79 55.54 0.60 -19.15 15 11 Si 0.91 18.16 29.57 -169.99 -5.03 13.13 15 12 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 13 H -0.28 -5.46 7.11 56.52 0.40 -5.05 15 14 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 15 C -0.36 -8.56 9.51 30.07 0.29 -8.27 15 16 S 0.07 1.29 22.62 -107.50 -2.43 -1.14 15 17 C -0.12 -2.36 6.30 -38.39 -0.24 -2.60 15 18 C -0.08 -1.28 5.87 -104.67 -0.61 -1.90 15 19 C 0.12 1.61 7.08 36.00 0.25 1.86 15 20 O -0.57 -6.73 12.07 -35.23 -0.43 -7.15 15 21 C -0.06 -0.92 9.01 -39.62 -0.36 -1.28 15 22 H 0.13 2.37 7.88 -52.49 -0.41 1.96 15 23 H 0.28 6.35 8.30 -40.82 -0.34 6.01 15 24 H 0.17 4.23 6.26 -52.49 -0.33 3.90 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 27 H 0.38 2.46 9.12 45.56 0.42 2.88 15 28 H 0.13 2.07 6.92 -52.49 -0.36 1.71 15 LS Contribution 271.87 15.07 4.10 4.10 Total: -1.00 -27.18 271.87 -7.16 -34.34 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -1.07 Total: 3.77 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: -3.67 Total: -20.27 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 1.37 Total: -26.78 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.43 Total: -7.15 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.43 Total: -1.14 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.18 -7.16 -34.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228928.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.089 kcal (2) G-P(sol) polarization free energy of solvation -27.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds