Wall clock time and date at job start Mon Mar 30 2020 06:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39040 * 120.04061 * 279.42180 * 3 2 1 5 5 C 1.40163 * 120.04495 * 180.02562 * 4 3 2 6 6 C 1.46705 * 129.47310 * 179.97438 * 5 4 3 7 7 C 1.40746 * 123.30240 * 0.04962 * 6 5 4 8 8 H 1.08000 * 120.00302 * 22.41697 * 7 6 5 9 9 C 1.39767 * 120.00190 * 202.41713 * 7 6 5 10 10 N 1.31046 * 119.99367 * 11.08650 * 9 7 6 11 11 Si 1.86794 * 120.00008 * 191.09376 * 9 7 6 12 12 H 1.48495 * 109.47453 * 89.99660 * 11 9 7 13 13 H 1.48504 * 109.46927 * 209.99592 * 11 9 7 14 14 H 1.48500 * 109.47322 * 329.99220 * 11 9 7 15 15 C 1.36411 * 113.39335 * 180.02562 * 6 5 4 16 16 S 1.69951 * 112.02689 * 0.02562 * 15 6 5 17 17 C 1.39618 * 119.32582 * 0.02562 * 5 4 3 18 18 C 1.40049 * 119.81771 * 359.97438 * 17 5 4 19 19 C 1.50696 * 119.64561 * 179.97438 * 18 17 5 20 20 O 1.42896 * 109.47172 * 179.97438 * 19 18 17 21 21 C 1.36220 * 120.71365 * 0.27147 * 18 17 5 22 22 H 1.07997 * 119.97682 * 359.97438 * 4 3 2 23 23 H 0.97001 * 119.99572 * 180.02562 * 10 9 7 24 24 H 1.08000 * 123.98426 * 179.97438 * 15 6 5 25 25 H 1.09001 * 109.46747 * 59.99905 * 19 18 17 26 26 H 1.09004 * 109.47054 * 299.99822 * 19 18 17 27 27 H 0.96703 * 113.99991 * 180.02562 * 20 19 18 28 28 H 1.07994 * 119.91153 * 179.73434 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2641 -0.1961 1.1874 5 6 4.6657 -0.1949 1.1876 6 6 5.5983 -0.3793 2.3049 7 6 5.1816 -0.6004 3.6310 8 1 4.1964 -0.9963 3.8285 9 6 6.0427 -0.3077 4.6922 10 7 7.1435 0.3693 4.4750 11 14 5.6244 -0.8815 6.4199 12 1 6.2037 -2.2296 6.6477 13 1 6.1879 0.0729 7.4084 14 1 4.1491 -0.9436 6.5773 15 6 6.9091 -0.3159 1.9325 16 16 7.0852 -0.0382 0.2651 17 6 5.3495 0.0057 -0.0130 18 6 4.6312 0.2022 -1.1991 19 6 5.3733 0.4189 -2.4927 20 8 4.4352 0.5941 -3.5563 21 6 3.2690 0.2055 -1.1951 22 1 2.7245 -0.3490 2.1103 23 1 7.7414 0.5721 5.2115 24 1 7.7372 -0.4281 2.6166 25 1 6.0008 -0.4476 -2.7011 26 1 5.9979 1.3083 -2.4086 27 1 4.8434 0.7384 -4.4210 28 1 2.7282 0.3625 -2.1166 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396228928.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:36 Heat of formation + Delta-G solvation = -10.188862 kcal Electronic energy + Delta-G solvation = -15808.345738 eV Core-core repulsion = 13107.365926 eV Total energy + Delta-G solvation = -2700.979811 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.69483 -37.87457 -37.78184 -36.38891 -34.14016 -32.78746 -30.11990 -28.26852 -26.67531 -25.01610 -23.20815 -21.38379 -19.27092 -18.63671 -18.10047 -17.94567 -16.96124 -16.12475 -15.94297 -15.64320 -15.23382 -14.94102 -14.72539 -14.48850 -13.98917 -13.83319 -13.55878 -13.20907 -13.01916 -12.77672 -12.60689 -12.30942 -12.25434 -11.79141 -11.64061 -11.22990 -11.18513 -11.00260 -10.02810 -9.20106 -8.61878 -8.47430 -6.28083 -0.24555 0.17449 1.05607 1.29696 1.40398 1.51714 1.61231 1.69452 1.90395 2.11370 2.23644 2.83955 2.89366 3.31778 3.37087 3.87442 4.04053 4.40275 4.41107 4.59450 4.62478 4.63615 5.07767 5.16817 5.22746 5.32482 5.41653 5.65739 5.86773 6.01013 6.44008 6.50764 6.83408 6.94513 7.01197 8.39699 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.020290 B = 0.007233 C = 0.005395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.634209 B = 3870.450478 C = 5188.359010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.291 3.709 3 C -0.057 4.057 4 C -0.020 4.020 5 C -0.097 4.097 6 C 0.061 3.939 7 C -0.466 4.466 8 H 0.078 0.922 9 C 0.029 3.971 10 N -0.828 5.828 11 Si 0.981 3.019 12 H -0.265 1.265 13 H -0.272 1.272 14 H -0.259 1.259 15 C -0.390 4.390 16 S 0.113 5.887 17 C -0.126 4.126 18 C -0.072 4.072 19 C 0.126 3.874 20 O -0.579 6.579 21 C -0.045 4.045 22 H 0.130 0.870 23 H 0.284 0.716 24 H 0.141 0.859 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.404 0.596 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.638 0.039 -9.845 9.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.023 4.023 3 C -0.065 4.065 4 C -0.043 4.043 5 C -0.108 4.108 6 C 0.053 3.947 7 C -0.498 4.498 8 H 0.096 0.904 9 C -0.184 4.184 10 N -0.455 5.455 11 Si 0.802 3.198 12 H -0.190 1.190 13 H -0.197 1.197 14 H -0.183 1.183 15 C -0.526 4.526 16 S 0.378 5.622 17 C -0.243 4.243 18 C -0.079 4.079 19 C 0.048 3.952 20 O -0.388 6.388 21 C -0.068 4.068 22 H 0.148 0.852 23 H 0.094 0.906 24 H 0.158 0.842 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.255 0.745 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.042 0.205 -10.054 10.056 hybrid contribution -0.213 -0.236 1.882 1.909 sum -0.171 -0.031 -8.172 8.174 Atomic orbital electron populations 1.81179 1.12592 1.11399 1.08891 1.25585 0.92335 0.92074 0.92304 1.15634 0.83716 1.12033 0.95068 1.20919 0.91992 0.94406 0.96966 1.19535 0.93733 1.04073 0.93416 1.17640 0.90016 0.94646 0.92447 1.19299 1.01609 1.38524 0.90408 0.90375 1.26606 0.94211 0.92654 1.04974 1.69908 1.11214 1.29102 1.35282 0.85201 0.79665 0.78785 0.76106 1.18989 1.19655 1.18289 1.24384 1.00724 1.29815 0.97649 1.81375 0.99572 1.76813 1.04404 1.22921 0.99278 1.05889 0.96256 1.18860 0.93297 1.02943 0.92758 1.20765 0.89661 1.01241 0.83519 1.86358 1.36516 1.95706 1.20260 1.20475 0.93022 0.96840 0.96505 0.85204 0.90583 0.84202 0.90710 0.90914 0.74462 0.82662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -16.43 18.54 19.00 0.35 -16.07 15 2 C 0.29 9.64 15.32 88.33 1.35 10.99 15 3 C -0.06 -1.89 5.72 -21.40 -0.12 -2.01 15 4 C -0.02 -0.78 9.57 22.93 0.22 -0.56 15 5 C -0.10 -4.25 6.02 -20.27 -0.12 -4.37 15 6 C 0.06 3.09 5.69 -20.88 -0.12 2.97 15 7 C -0.47 -23.94 9.07 23.25 0.21 -23.73 15 8 H 0.08 3.82 7.69 -2.91 -0.02 3.80 15 9 C 0.03 1.43 5.36 85.18 0.46 1.89 15 10 N -0.83 -42.53 10.79 21.81 0.24 -42.30 15 11 Si 0.98 37.88 29.57 68.60 2.03 39.90 15 12 H -0.26 -9.99 7.11 99.48 0.71 -9.28 15 13 H -0.27 -10.12 7.11 99.48 0.71 -9.41 15 14 H -0.26 -9.74 7.11 99.48 0.71 -9.03 15 15 C -0.39 -19.32 9.51 67.39 0.64 -18.68 15 16 S 0.11 4.38 22.62 -56.49 -1.28 3.10 15 17 C -0.13 -4.85 6.30 23.04 0.15 -4.71 15 18 C -0.07 -2.27 5.87 -19.90 -0.12 -2.39 15 19 C 0.13 2.86 7.08 71.23 0.50 3.36 15 20 O -0.58 -11.15 12.07 -148.98 -1.80 -12.95 15 21 C -0.05 -1.39 9.01 22.24 0.20 -1.19 15 22 H 0.13 4.83 7.88 -2.91 -0.02 4.81 15 23 H 0.28 13.32 8.30 -92.71 -0.77 12.55 15 24 H 0.14 7.56 6.26 -2.91 -0.02 7.54 15 25 H 0.08 1.52 8.14 -2.39 -0.02 1.50 15 26 H 0.07 1.51 8.14 -2.39 -0.02 1.50 15 27 H 0.40 3.42 9.12 -74.06 -0.68 2.74 15 28 H 0.16 4.16 6.92 -2.91 -0.02 4.14 15 Total: -1.00 -59.23 271.87 3.34 -55.89 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 0.55 Total: 10.85 kcal Atomic # 6 Polarization: -41.68 SS G_CDS: 3.25 Total: -38.43 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: 0.59 Total: -58.37 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: -1.80 Total: -12.95 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.90 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -1.28 Total: 3.10 kcal Total: -59.23 3.34 -55.89 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228928.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.698 kcal (2) G-P(sol) polarization free energy of solvation -59.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds