Wall clock time and date at job start Mon Mar 30 2020 06:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.33821 * 122.86433 * 237.67534 * 3 2 1 5 5 S 1.75196 * 111.34183 * 179.73657 * 4 3 2 6 6 C 1.75976 * 92.53217 * 0.27046 * 5 4 3 7 7 C 1.40540 * 129.94132 * 180.02562 * 6 5 4 8 8 C 1.35681 * 120.87505 * 180.02562 * 7 6 5 9 9 C 1.50708 * 119.97832 * 179.97438 * 8 7 6 10 10 O 1.42900 * 109.47023 * 359.97438 * 9 8 7 11 11 C 1.41109 * 120.04388 * 359.95536 * 8 7 6 12 12 C 1.41244 * 120.11171 * 180.02562 * 11 8 7 13 13 H 1.08006 * 119.99285 * 25.30433 * 12 11 8 14 14 C 1.39879 * 120.00391 * 205.30093 * 12 11 8 15 15 N 1.30871 * 119.99930 * 17.56557 * 14 12 11 16 16 Si 1.86799 * 119.99856 * 197.56318 * 14 12 11 17 17 H 1.48502 * 109.47280 * 94.68701 * 16 14 12 18 18 H 1.48500 * 109.47117 * 214.68558 * 16 14 12 19 19 H 1.48500 * 109.47444 * 334.68770 * 16 14 12 20 20 C 1.40004 * 119.78847 * 0.02562 * 11 8 7 21 21 C 1.39836 * 109.97038 * 359.97438 * 6 5 4 22 22 H 1.07996 * 124.33198 * 0.02562 * 4 3 2 23 23 H 1.08005 * 119.56080 * 359.95257 * 7 6 5 24 24 H 1.09000 * 109.46270 * 119.98037 * 9 8 7 25 25 H 1.09000 * 109.46914 * 239.97750 * 9 8 7 26 26 H 0.96696 * 113.99852 * 179.97438 * 10 9 8 27 27 H 0.97007 * 120.00319 * 179.97438 * 15 14 12 28 28 H 1.07999 * 119.97933 * 180.02562 * 20 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2939 0.6020 0.9499 5 16 5.0106 0.4093 0.6581 6 6 4.7361 -0.5160 -0.8133 7 6 5.6596 -1.0844 -1.7073 8 6 5.2394 -1.7698 -2.8002 9 6 6.2474 -2.3706 -3.7459 10 8 7.5675 -2.0840 -3.2798 11 6 3.8592 -1.9208 -3.0519 12 6 3.4201 -2.6345 -4.1889 13 1 4.0542 -3.3888 -4.6310 14 6 2.1642 -2.3645 -4.7423 15 7 1.5446 -1.2503 -4.4465 16 14 1.3714 -3.5942 -5.9037 17 1 0.4576 -4.4799 -5.1383 18 1 0.5998 -2.8668 -6.9433 19 1 2.4263 -4.4134 -6.5527 20 6 2.9262 -1.3610 -2.1708 21 6 3.3634 -0.6535 -1.0419 22 1 2.8751 1.1338 1.7913 23 1 6.7179 -0.9731 -1.5224 24 1 6.1043 -3.4502 -3.7913 25 1 6.1124 -1.9439 -4.7398 26 1 8.2690 -2.4416 -3.8411 27 1 0.6738 -1.0628 -4.8306 28 1 1.8691 -1.4750 -2.3602 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396228948.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:29 Heat of formation + Delta-G solvation = -8.653169 kcal Electronic energy + Delta-G solvation = -16026.950180 eV Core-core repulsion = 13326.036961 eV Total energy + Delta-G solvation = -2700.913219 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.27175 -38.31255 -37.25816 -36.24811 -34.85951 -31.56960 -31.04552 -27.73550 -26.29424 -25.13904 -22.89944 -21.71099 -19.33754 -18.68431 -17.88997 -17.79032 -16.83495 -16.01420 -15.74214 -15.66473 -15.12467 -15.10303 -14.55379 -14.26172 -14.16711 -13.73632 -13.57431 -13.37275 -13.06493 -12.86359 -12.64480 -12.29462 -12.01603 -11.81017 -11.49951 -11.27131 -11.04949 -10.84903 -10.10298 -9.14326 -8.69050 -8.46088 -6.35520 -0.20818 0.74814 0.76710 1.11488 1.15058 1.37547 1.45650 1.50972 1.65102 2.16189 2.33722 2.69768 3.19707 3.55979 3.58255 3.85494 4.33303 4.45662 4.67448 4.71125 4.81806 4.91173 5.08041 5.16142 5.30322 5.54019 5.69422 5.73648 5.98930 6.20278 6.44963 6.55923 6.83373 6.89939 7.09008 8.25572 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.009172 C = 0.005915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.340956 B = 3052.116819 C = 4732.422016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.298 3.702 3 C -0.072 4.072 4 C -0.112 4.112 5 S 0.151 5.849 6 C -0.262 4.262 7 C -0.041 4.041 8 C -0.171 4.171 9 C 0.148 3.852 10 O -0.584 6.584 11 C 0.094 3.906 12 C -0.478 4.478 13 H 0.094 0.906 14 C 0.035 3.965 15 N -0.819 5.819 16 Si 0.977 3.023 17 H -0.271 1.271 18 H -0.273 1.273 19 H -0.245 1.245 20 C -0.185 4.185 21 C -0.038 4.038 22 H 0.209 0.791 23 H 0.126 0.874 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.396 0.604 27 H 0.286 0.714 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.127 0.019 3.752 8.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.147 5.147 2 C -0.017 4.017 3 C -0.091 4.091 4 C -0.252 4.252 5 S 0.415 5.585 6 C -0.377 4.377 7 C -0.062 4.062 8 C -0.174 4.174 9 C 0.071 3.929 10 O -0.392 6.392 11 C 0.091 3.909 12 C -0.507 4.507 13 H 0.112 0.888 14 C -0.181 4.181 15 N -0.444 5.444 16 Si 0.798 3.202 17 H -0.196 1.196 18 H -0.198 1.198 19 H -0.168 1.168 20 C -0.207 4.207 21 C -0.044 4.044 22 H 0.226 0.774 23 H 0.144 0.856 24 H 0.074 0.926 25 H 0.070 0.930 26 H 0.246 0.754 27 H 0.096 0.904 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.167 0.955 4.950 8.762 hybrid contribution -1.442 -1.114 -1.942 2.663 sum 5.725 -0.159 3.008 6.469 Atomic orbital electron populations 1.81110 1.12720 1.10945 1.09907 1.25386 0.92281 0.92081 0.91995 1.15916 0.84417 1.08818 0.99944 1.25804 0.97939 1.00237 1.01176 1.83153 1.00909 1.54782 1.19693 1.22189 0.95378 1.15172 1.04919 1.19715 0.97664 0.96172 0.92685 1.19668 0.93503 1.05304 0.98882 1.20454 0.80272 0.97686 0.94464 1.86363 1.15901 1.81177 1.55777 1.17456 0.90322 0.90853 0.92277 1.19838 1.01670 1.18846 1.10320 0.88797 1.26782 0.96984 0.96161 0.98201 1.69921 1.14286 1.22302 1.37886 0.85248 0.78925 0.78465 0.77560 1.19577 1.19800 1.16788 1.20870 0.98857 1.06334 0.94670 1.18838 0.91487 0.99162 0.94934 0.77373 0.85582 0.92557 0.93017 0.75443 0.90390 0.88664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -20.33 18.54 19.00 0.35 -19.98 15 2 C 0.30 12.22 15.35 88.33 1.36 13.58 15 3 C -0.07 -2.77 5.82 -20.88 -0.12 -2.89 15 4 C -0.11 -3.24 10.83 66.82 0.72 -2.52 15 5 S 0.15 4.44 23.21 -56.49 -1.31 3.13 15 6 C -0.26 -10.76 6.48 23.22 0.15 -10.61 15 7 C -0.04 -1.71 9.35 22.24 0.21 -1.50 15 8 C -0.17 -7.62 5.89 -19.75 -0.12 -7.74 15 9 C 0.15 5.35 6.23 71.24 0.44 5.79 15 10 O -0.58 -17.71 12.09 -148.98 -1.80 -19.51 15 11 C 0.09 4.79 5.55 -21.41 -0.12 4.67 15 12 C -0.48 -23.59 8.47 23.41 0.20 -23.39 15 13 H 0.09 4.25 6.99 -2.91 -0.02 4.23 15 14 C 0.03 1.69 5.13 85.23 0.44 2.12 15 15 N -0.82 -42.80 10.98 21.82 0.24 -42.56 15 16 Si 0.98 36.94 29.59 68.60 2.03 38.97 15 17 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 18 H -0.27 -10.08 7.11 99.48 0.71 -9.37 15 19 H -0.24 -8.56 7.11 99.48 0.71 -7.86 15 20 C -0.18 -9.63 8.48 23.18 0.20 -9.44 15 21 C -0.04 -1.72 6.00 -20.26 -0.12 -1.84 15 22 H 0.21 4.05 8.06 -2.91 -0.02 4.03 15 23 H 0.13 4.84 6.91 -2.91 -0.02 4.82 15 24 H 0.06 1.91 7.79 -2.39 -0.02 1.89 15 25 H 0.05 1.86 8.14 -2.39 -0.02 1.84 15 26 H 0.40 7.30 9.12 -74.06 -0.68 6.63 15 27 H 0.29 13.87 8.30 -92.70 -0.77 13.10 15 28 H 0.10 5.42 6.14 -2.91 -0.02 5.40 15 Total: -1.00 -61.90 270.75 3.30 -58.60 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.56 Total: 15.11 kcal Atomic # 6 Polarization: -37.00 SS G_CDS: 3.23 Total: -33.77 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: 0.59 Total: -62.54 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -1.80 Total: -19.51 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.31 Total: 3.13 kcal Total: -61.90 3.30 -58.60 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396228948.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.950 kcal (2) G-P(sol) polarization free energy of solvation -61.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds