Wall clock time and date at job start Mon Mar 30 2020 06:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.33567 * 124.34738 * 336.27368 * 3 2 1 5 5 C 1.45051 * 114.63111 * 179.80090 * 4 3 2 6 6 C 1.40388 * 111.95554 * 0.41782 * 5 4 3 7 7 C 1.40521 * 120.09079 * 179.80617 * 6 5 4 8 8 C 1.35651 * 120.87071 * 359.75043 * 7 6 5 9 9 C 1.41190 * 120.16758 * 0.02562 * 8 7 6 10 10 C 1.41264 * 120.04993 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00041 * 153.66041 * 10 9 8 12 12 C 1.39864 * 120.00395 * 333.66326 * 10 9 8 13 13 N 1.30893 * 119.99438 * 343.38017 * 12 10 9 14 14 Si 1.86793 * 120.00273 * 163.37600 * 12 10 9 15 15 H 1.48511 * 109.47041 * 90.00173 * 14 12 10 16 16 H 1.48496 * 109.47426 * 209.99763 * 14 12 10 17 17 H 1.48500 * 109.47228 * 330.00188 * 14 12 10 18 18 C 1.39850 * 119.89705 * 359.97438 * 9 8 7 19 19 C 1.50698 * 120.01218 * 179.97438 * 18 9 8 20 20 O 1.42906 * 109.47148 * 89.99738 * 19 18 9 21 21 S 1.75253 * 124.34685 * 156.31155 * 3 2 1 22 22 H 1.08004 * 122.69057 * 0.05217 * 4 3 2 23 23 H 1.08004 * 119.56283 * 179.76411 * 7 6 5 24 24 H 1.08010 * 119.91206 * 179.97438 * 8 7 6 25 25 H 0.97005 * 120.00068 * 180.02562 * 13 12 10 26 26 H 1.09000 * 109.47371 * 329.99857 * 19 18 9 27 27 H 1.08998 * 109.47086 * 209.99765 * 19 18 9 28 28 H 0.96695 * 113.99853 * 299.99431 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3221 -1.0086 0.4437 5 6 4.7517 -0.7857 0.3410 6 6 5.0488 0.4728 -0.2056 7 6 6.3862 0.8681 -0.3781 8 6 7.4059 0.0494 -0.0178 9 6 7.1344 -1.2195 0.5386 10 6 8.1983 -2.0704 0.9124 11 1 8.0533 -2.8072 1.6887 12 6 9.4395 -1.9586 0.2774 13 7 9.5376 -1.3166 -0.8590 14 14 10.9569 -2.7253 1.0512 15 1 11.1113 -4.1191 0.5623 16 1 12.1567 -1.9341 0.6775 17 1 10.8092 -2.7325 2.5288 18 6 5.8106 -1.6328 0.7190 19 6 5.5178 -2.9869 1.3120 20 8 5.4248 -2.8743 2.7336 21 16 3.5562 1.3261 -0.5813 22 1 2.9012 -1.9195 0.8431 23 1 6.6050 1.8367 -0.8029 24 1 8.4282 0.3688 -0.1577 25 1 10.3984 -1.2394 -1.2997 26 1 6.3204 -3.6778 1.0541 27 1 4.5744 -3.3613 0.9147 28 1 6.2304 -2.5462 3.1557 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229043.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:20 Heat of formation + Delta-G solvation = 5.037344 kcal Electronic energy + Delta-G solvation = -15966.518462 eV Core-core repulsion = 13266.198909 eV Total energy + Delta-G solvation = -2700.319553 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.75573 -36.73225 -35.72428 -34.97579 -33.17021 -30.69352 -29.12633 -26.25005 -24.68707 -23.53642 -21.14316 -20.21190 -18.11800 -17.46173 -16.20287 -16.05141 -15.25075 -14.63611 -14.54164 -13.91595 -13.77954 -13.57135 -13.13066 -12.86350 -12.62058 -12.44850 -12.26680 -11.73792 -11.44105 -11.33991 -11.11918 -10.93743 -10.45361 -10.18769 -10.10370 -9.87792 -9.44394 -9.07037 -8.59145 -7.64648 -7.20768 -6.95155 -4.71891 1.02747 1.76059 2.33961 2.65201 2.81708 2.90666 2.90919 2.96617 3.18111 3.61314 3.68302 4.18050 4.21837 5.09212 5.40976 5.58655 5.74541 6.02053 6.05980 6.17334 6.31294 6.48286 6.56104 6.72449 6.86240 7.18267 7.23732 7.34864 7.56616 7.62354 7.81725 8.13956 8.32864 8.48142 8.50818 9.82411 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.032255 B = 0.006117 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.873090 B = 4576.646741 C = 5298.907118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C 0.294 3.706 3 C -0.146 4.146 4 C -0.031 4.031 5 C -0.030 4.030 6 C -0.208 4.208 7 C -0.083 4.083 8 C -0.101 4.101 9 C 0.123 3.877 10 C -0.453 4.453 11 H 0.085 0.915 12 C 0.077 3.923 13 N -0.785 5.785 14 Si 0.912 3.088 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.258 1.258 18 C -0.222 4.222 19 C 0.139 3.861 20 O -0.579 6.579 21 S 0.078 5.922 22 H 0.141 0.859 23 H 0.101 0.899 24 H 0.130 0.870 25 H 0.287 0.713 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 0.705 1.152 1.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.021 4.021 3 C -0.264 4.264 4 C -0.069 4.069 5 C -0.036 4.036 6 C -0.324 4.324 7 C -0.105 4.105 8 C -0.122 4.122 9 C 0.119 3.881 10 C -0.482 4.482 11 H 0.103 0.897 12 C -0.143 4.143 13 N -0.409 5.409 14 Si 0.735 3.265 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.181 1.181 18 C -0.228 4.228 19 C 0.062 3.938 20 O -0.384 6.384 21 S 0.341 5.659 22 H 0.159 0.841 23 H 0.119 0.881 24 H 0.148 0.852 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.276 1.982 0.199 3.025 hybrid contribution 2.078 -1.356 0.694 2.577 sum -0.198 0.625 0.894 1.109 Atomic orbital electron populations 1.81206 1.11364 1.08138 1.10235 1.24622 0.91293 0.93372 0.92858 1.19069 0.88127 1.02800 1.16356 1.21335 0.92442 0.97432 0.95673 1.18514 0.90659 0.93850 1.00562 1.22174 0.95924 0.99033 1.15238 1.19857 0.89610 0.99173 1.01873 1.21201 0.98277 0.93291 0.99444 1.17309 0.90850 0.91367 0.88542 1.19562 0.94239 1.16225 1.18125 0.89725 1.25974 1.00877 0.93896 0.93584 1.69792 1.27546 1.31755 1.11786 0.86228 0.79669 0.79673 0.80882 1.19222 1.19877 1.18139 1.20075 0.91457 0.97420 1.13845 1.20747 1.00147 0.93440 0.79479 1.86407 1.42201 1.89142 1.20696 1.83488 0.95657 1.17688 1.69025 0.84118 0.88126 0.85199 0.90198 0.92703 0.90967 0.77927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.70 18.54 41.84 0.78 -6.92 15 2 C 0.29 4.99 15.73 -22.47 -0.35 4.64 15 3 C -0.15 -2.50 6.15 -39.29 -0.24 -2.74 15 4 C -0.03 -0.54 9.65 -38.52 -0.37 -0.92 15 5 C -0.03 -0.61 5.96 -105.43 -0.63 -1.23 15 6 C -0.21 -4.16 6.51 -37.91 -0.25 -4.40 15 7 C -0.08 -1.67 9.98 -39.65 -0.40 -2.07 15 8 C -0.10 -2.21 8.59 -39.39 -0.34 -2.55 15 9 C 0.12 2.74 5.54 -107.02 -0.59 2.15 15 10 C -0.45 -9.89 8.07 -37.82 -0.31 -10.19 15 11 H 0.08 1.74 6.68 -52.48 -0.35 1.39 15 12 C 0.08 1.63 5.14 -17.34 -0.09 1.54 15 13 N -0.78 -17.35 10.99 55.54 0.61 -16.74 15 14 Si 0.91 16.05 29.59 -169.99 -5.03 11.02 15 15 H -0.27 -4.74 7.11 56.52 0.40 -4.33 15 16 H -0.27 -4.79 7.11 56.52 0.40 -4.39 15 17 H -0.26 -4.50 7.11 56.52 0.40 -4.10 15 18 C -0.22 -4.65 5.60 -103.06 -0.58 -5.22 15 19 C 0.14 2.59 6.38 36.00 0.23 2.82 15 20 O -0.58 -10.55 13.67 -35.23 -0.48 -11.03 15 21 S 0.08 1.34 23.16 -107.50 -2.49 -1.14 15 22 H 0.14 2.24 7.53 -52.48 -0.39 1.84 15 23 H 0.10 1.81 8.06 -52.48 -0.42 1.39 15 24 H 0.13 2.89 6.23 -52.48 -0.33 2.56 15 25 H 0.29 5.79 8.30 -40.82 -0.34 5.45 15 26 H 0.05 1.03 6.74 -51.93 -0.35 0.68 15 27 H 0.07 1.25 7.25 -51.93 -0.38 0.87 15 28 H 0.37 6.00 8.90 45.56 0.41 6.40 15 LS Contribution 270.26 15.07 4.07 4.07 Total: -1.00 -23.78 270.26 -7.40 -31.19 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -0.95 Total: 7.76 kcal Atomic # 6 Polarization: -14.28 SS G_CDS: -3.91 Total: -18.19 kcal Atomic # 7 Polarization: -25.05 SS G_CDS: 1.39 Total: -23.66 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: -0.48 Total: -11.03 kcal Atomic # 14 Polarization: 16.05 SS G_CDS: -5.03 Total: 11.02 kcal Atomic # 16 Polarization: 1.34 SS G_CDS: -2.49 Total: -1.14 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -23.78 -7.40 -31.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229043.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.222 kcal (2) G-P(sol) polarization free energy of solvation -23.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds