Wall clock time and date at job start Mon Mar 30 2020 06:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39212 * 119.80250 * 72.09859 * 3 2 1 5 5 C 1.40994 * 120.79413 * 180.27649 * 4 3 2 6 6 C 1.45562 * 129.03007 * 180.32469 * 5 4 3 7 7 C 1.50704 * 122.54877 * 359.38459 * 6 5 4 8 8 O 1.42897 * 109.46789 * 180.25388 * 7 6 5 9 9 C 1.31784 * 114.89544 * 179.64498 * 6 5 4 10 10 S 1.75284 * 111.39188 * 359.76279 * 9 6 5 11 11 C 1.39603 * 119.16952 * 359.49296 * 5 4 3 12 12 C 1.42314 * 119.91085 * 0.50291 * 11 5 4 13 13 C 1.41006 * 120.00420 * 179.76943 * 12 11 5 14 14 H 1.07997 * 119.99928 * 25.06787 * 13 12 11 15 15 C 1.39906 * 119.99796 * 205.07153 * 13 12 11 16 16 N 1.30873 * 120.00190 * 17.93715 * 15 13 12 17 17 Si 1.86798 * 119.99906 * 197.93808 * 15 13 12 18 18 H 1.48497 * 109.47082 * 59.99527 * 17 15 13 19 19 H 1.48504 * 109.47334 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46868 * 300.00110 * 17 15 13 21 21 C 1.39382 * 119.79680 * 252.11780 * 3 2 1 22 22 H 1.08000 * 119.60076 * 0.02562 * 4 3 2 23 23 H 1.09001 * 109.47098 * 300.25144 * 7 6 5 24 24 H 1.08998 * 109.47495 * 60.25537 * 7 6 5 25 25 H 0.96706 * 114.00061 * 179.97438 * 8 7 6 26 26 H 1.08001 * 124.30396 * 179.77151 * 9 6 5 27 27 H 0.97001 * 120.00522 * 180.02562 * 16 15 13 28 28 H 1.07999 * 120.13130 * 359.96000 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2601 -0.3704 -1.1495 5 6 4.6698 -0.3828 -1.1709 6 6 5.5669 -0.7296 -2.2635 7 6 5.0662 -1.1668 -3.6161 8 8 6.1788 -1.4420 -4.4696 9 6 6.8502 -0.6374 -1.9782 10 16 7.1014 -0.1045 -0.3273 11 6 5.3711 -0.0068 -0.0239 12 6 4.6609 0.3720 1.1498 13 6 5.3673 0.7475 2.3110 14 1 6.3708 1.1383 2.2299 15 6 4.7680 0.6138 3.5681 16 7 3.7256 -0.1634 3.7169 17 14 5.4559 1.5446 5.0344 18 1 5.4013 3.0037 4.7643 19 1 4.6477 1.2344 6.2411 20 1 6.8651 1.1359 5.2633 21 6 3.2605 0.3724 1.1511 22 1 2.7105 -0.6560 -2.0343 23 1 4.4613 -2.0668 -3.5061 24 1 4.4605 -0.3731 -4.0533 25 1 5.9306 -1.7298 -5.3588 26 1 7.6459 -0.8616 -2.6732 27 1 3.3099 -0.2559 4.5884 28 1 2.7192 0.6597 2.0404 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229056.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:20 Heat of formation + Delta-G solvation = 5.703271 kcal Electronic energy + Delta-G solvation = -15845.409075 eV Core-core repulsion = 13145.118398 eV Total energy + Delta-G solvation = -2700.290677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.64577 -37.02433 -35.78819 -34.77125 -33.18202 -30.47258 -28.57704 -26.86216 -25.35551 -22.66892 -21.81072 -19.65159 -17.90824 -16.92741 -16.62359 -16.33480 -15.24150 -14.83702 -14.76216 -14.15870 -13.63793 -13.23572 -13.17758 -12.78198 -12.28154 -12.12825 -11.94226 -11.72084 -11.56769 -11.29736 -11.05392 -10.76890 -10.59020 -10.30972 -10.14564 -9.82418 -9.65417 -9.43214 -8.38542 -7.54917 -7.12419 -6.88825 -4.65423 1.76907 1.86963 2.52387 2.82277 2.94510 2.96770 3.05064 3.23819 3.41052 3.71684 3.75889 4.33399 4.44023 4.80530 5.22374 5.44210 5.56509 5.69436 5.73078 6.04848 6.34614 6.47524 6.63539 6.81219 6.89649 7.00985 7.21775 7.42525 7.51105 7.69750 7.74769 8.09234 8.26342 8.43906 8.45969 9.83747 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018158 B = 0.007973 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.673043 B = 3510.985504 C = 4963.486066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C 0.283 3.717 3 C -0.003 4.003 4 C -0.176 4.176 5 C -0.035 4.035 6 C -0.106 4.106 7 C 0.140 3.860 8 O -0.572 6.572 9 C -0.182 4.182 10 S 0.055 5.945 11 C -0.192 4.192 12 C 0.145 3.855 13 C -0.443 4.443 14 H 0.087 0.913 15 C 0.076 3.924 16 N -0.775 5.775 17 Si 0.914 3.086 18 H -0.259 1.259 19 H -0.275 1.275 20 H -0.261 1.261 21 C -0.124 4.124 22 H 0.102 0.898 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.377 0.623 26 H 0.158 0.842 27 H 0.289 0.711 28 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 -0.471 -6.591 8.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.146 5.146 2 C -0.030 4.030 3 C -0.008 4.008 4 C -0.201 4.201 5 C -0.043 4.043 6 C -0.120 4.120 7 C 0.060 3.940 8 O -0.378 6.378 9 C -0.316 4.316 10 S 0.320 5.680 11 C -0.308 4.308 12 C 0.139 3.861 13 C -0.471 4.471 14 H 0.105 0.895 15 C -0.145 4.145 16 N -0.398 5.398 17 Si 0.737 3.263 18 H -0.184 1.184 19 H -0.200 1.200 20 H -0.185 1.185 21 C -0.150 4.150 22 H 0.120 0.880 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.224 0.776 26 H 0.176 0.824 27 H 0.101 0.899 28 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.351 -0.130 -5.008 6.635 hybrid contribution -0.906 -0.189 -0.612 1.110 sum 3.444 -0.318 -5.620 6.599 Atomic orbital electron populations 1.81073 1.12586 1.11161 1.09799 1.26199 0.93125 0.92007 0.91716 1.15685 0.82825 1.06068 0.96235 1.19896 0.90998 1.12444 0.96712 1.18363 0.92851 1.01771 0.91272 1.19407 0.92950 1.05131 0.94530 1.20532 0.87230 0.98692 0.87530 1.86439 1.34134 1.90391 1.26786 1.24705 0.99607 1.07286 1.00044 1.83672 1.05905 1.72199 1.06210 1.22697 0.94459 1.14231 0.99393 1.16766 0.90855 0.88837 0.89652 1.19550 1.01651 1.35888 0.89993 0.89476 1.25979 0.94177 0.93234 1.01090 1.69784 1.17416 1.25891 1.26758 0.86238 0.80098 0.80959 0.78981 1.18360 1.19991 1.18532 1.21181 0.93385 1.04473 0.95946 0.87971 0.92535 0.92553 0.77617 0.82432 0.89937 0.84867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.10 18.54 41.84 0.78 -9.33 15 2 C 0.28 5.96 15.29 -22.47 -0.34 5.61 15 3 C 0.00 -0.07 5.71 -107.18 -0.61 -0.68 15 4 C -0.18 -3.54 9.54 -38.18 -0.36 -3.91 15 5 C -0.04 -0.74 6.00 -105.43 -0.63 -1.37 15 6 C -0.11 -1.94 5.97 -103.59 -0.62 -2.56 15 7 C 0.14 1.98 7.31 36.01 0.26 2.24 15 8 O -0.57 -7.28 12.48 -35.23 -0.44 -7.72 15 9 C -0.18 -3.28 10.27 28.84 0.30 -2.98 15 10 S 0.06 1.08 22.80 -107.50 -2.45 -1.37 15 11 C -0.19 -4.30 6.37 -37.51 -0.24 -4.54 15 12 C 0.14 3.46 5.59 -106.60 -0.60 2.87 15 13 C -0.44 -10.49 8.81 -37.91 -0.33 -10.82 15 14 H 0.09 2.00 7.74 -52.49 -0.41 1.59 15 15 C 0.08 1.72 5.12 -17.34 -0.09 1.63 15 16 N -0.78 -18.12 10.98 55.55 0.61 -17.51 15 17 Si 0.91 17.01 29.60 -169.99 -5.03 11.98 15 18 H -0.26 -4.81 7.11 56.52 0.40 -4.41 15 19 H -0.28 -5.02 7.11 56.52 0.40 -4.62 15 20 H -0.26 -4.83 7.11 56.52 0.40 -4.42 15 21 C -0.12 -2.89 8.36 -38.48 -0.32 -3.21 15 22 H 0.10 1.80 8.03 -52.49 -0.42 1.38 15 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.06 0.73 8.14 -51.93 -0.42 0.30 15 25 H 0.38 2.74 9.12 45.56 0.42 3.16 15 26 H 0.16 2.55 7.41 -52.49 -0.39 2.16 15 27 H 0.29 6.18 8.30 -40.82 -0.34 5.84 15 28 H 0.13 3.22 6.16 -52.49 -0.32 2.89 15 LS Contribution 273.11 15.07 4.12 4.12 Total: -1.00 -26.25 273.11 -7.12 -33.36 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -1.10 Total: 4.20 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -3.59 Total: -17.72 kcal Atomic # 7 Polarization: -28.22 SS G_CDS: 1.39 Total: -26.84 kcal Atomic # 8 Polarization: -7.28 SS G_CDS: -0.44 Total: -7.72 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.45 Total: -1.37 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -26.25 -7.12 -33.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229056.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.066 kcal (2) G-P(sol) polarization free energy of solvation -26.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds