Wall clock time and date at job start Mon Mar 30 2020 06:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.33805 * 124.68988 * 78.60989 * 3 2 1 5 5 C 1.40536 * 115.53624 * 179.97438 * 4 3 2 6 6 C 1.41735 * 128.67141 * 180.02562 * 5 4 3 7 7 C 1.37593 * 120.94747 * 179.97438 * 6 5 4 8 8 C 1.38010 * 120.86891 * 0.03849 * 7 6 5 9 9 C 1.50697 * 120.06433 * 179.97438 * 8 7 6 10 10 O 1.42894 * 109.47190 * 359.97438 * 9 8 7 11 11 C 1.40352 * 119.87278 * 359.97438 * 8 7 6 12 12 C 1.40906 * 120.11135 * 179.71881 * 11 8 7 13 13 H 1.07999 * 120.00430 * 321.45649 * 12 11 8 14 14 C 1.39954 * 119.99656 * 141.45625 * 12 11 8 15 15 N 1.30854 * 120.00088 * 338.24185 * 14 12 11 16 16 Si 1.86797 * 120.00201 * 158.24563 * 14 12 11 17 17 H 1.48502 * 109.46950 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47639 * 119.99716 * 16 14 12 19 19 H 1.48504 * 109.47190 * 240.00080 * 16 14 12 20 20 C 1.39711 * 112.57775 * 0.02562 * 5 4 3 21 21 S 1.75481 * 124.69175 * 258.60465 * 3 2 1 22 22 H 1.07996 * 122.23179 * 359.97024 * 4 3 2 23 23 H 1.08005 * 119.52593 * 0.02562 * 6 5 4 24 24 H 1.08005 * 119.57070 * 180.02562 * 7 6 5 25 25 H 1.09004 * 109.46917 * 119.98366 * 9 8 7 26 26 H 1.09004 * 109.47453 * 239.98071 * 9 8 7 27 27 H 0.96701 * 114.00355 * 179.97438 * 10 9 8 28 28 H 0.97004 * 119.99998 * 185.45797 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3296 -0.2163 -1.0785 5 6 4.7171 -0.1710 -0.8595 6 6 5.7676 -0.3578 -1.7925 7 6 7.0842 -0.2773 -1.4011 8 6 7.4177 -0.0130 -0.0882 9 6 8.8658 0.0705 0.3207 10 8 9.6966 -0.1584 -0.8192 11 6 6.4057 0.1777 0.8654 12 6 6.7406 0.4419 2.2083 13 1 7.5780 -0.0639 2.6657 14 6 5.9879 1.3599 2.9495 15 7 5.2755 2.2694 2.3350 16 14 6.0002 1.2870 4.8160 17 1 6.8779 0.1753 5.2621 18 1 6.5128 2.5710 5.3583 19 1 4.6195 1.0564 5.3116 20 6 5.0413 0.0974 0.4727 21 16 3.5667 0.2862 1.4144 22 1 2.9064 -0.4132 -2.0524 23 1 5.5311 -0.5655 -2.8257 24 1 7.8670 -0.4231 -2.1308 25 1 9.0718 1.0606 0.7276 26 1 9.0734 -0.6844 1.0790 27 1 10.6440 -0.1191 -0.6296 28 1 4.8173 2.9543 2.8470 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229066.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:04 Heat of formation + Delta-G solvation = -6.143014 kcal Electronic energy + Delta-G solvation = -16111.394514 eV Core-core repulsion = 13410.590144 eV Total energy + Delta-G solvation = -2700.804370 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.18320 -38.25067 -37.45192 -36.24040 -34.92568 -31.93334 -30.78996 -27.64699 -26.78647 -23.91936 -23.51456 -21.10989 -19.94638 -18.69990 -17.97698 -17.24102 -16.77226 -16.09231 -15.88118 -15.58957 -15.16354 -14.95015 -14.66058 -14.35349 -14.01652 -13.79505 -13.71306 -13.33544 -13.06362 -12.77749 -12.62158 -12.18663 -12.00721 -11.74923 -11.46956 -11.21390 -10.86084 -10.73859 -10.09682 -8.98287 -8.77724 -8.08306 -6.39957 -0.40223 0.53965 0.93756 1.22950 1.41920 1.51201 1.52370 1.52960 1.90274 2.19584 2.27024 2.72610 2.87441 3.43757 3.65281 4.33820 4.38047 4.53056 4.69628 4.82473 4.87938 4.91167 5.05918 5.18285 5.40941 5.51235 5.69178 5.91081 6.04483 6.29183 6.31427 6.46784 6.80540 6.88517 7.12886 8.27507 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.010632 C = 0.006502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.706686 B = 2632.845433 C = 4305.540547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.312 3.688 3 C -0.178 4.178 4 C -0.038 4.038 5 C -0.085 4.085 6 C -0.183 4.183 7 C -0.072 4.072 8 C -0.194 4.194 9 C 0.155 3.845 10 O -0.584 6.584 11 C 0.124 3.876 12 C -0.498 4.498 13 H 0.090 0.910 14 C 0.045 3.955 15 N -0.799 5.799 16 Si 0.949 3.051 17 H -0.254 1.254 18 H -0.265 1.265 19 H -0.267 1.267 20 C -0.173 4.173 21 S 0.164 5.836 22 H 0.166 0.834 23 H 0.132 0.868 24 H 0.124 0.876 25 H 0.045 0.955 26 H 0.050 0.950 27 H 0.394 0.606 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.179 -2.413 -1.235 4.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.003 4.003 3 C -0.297 4.297 4 C -0.076 4.076 5 C -0.092 4.092 6 C -0.205 4.205 7 C -0.091 4.091 8 C -0.200 4.200 9 C 0.077 3.923 10 O -0.392 6.392 11 C 0.119 3.881 12 C -0.527 4.527 13 H 0.108 0.892 14 C -0.172 4.172 15 N -0.425 5.425 16 Si 0.770 3.230 17 H -0.177 1.177 18 H -0.190 1.190 19 H -0.192 1.192 20 C -0.290 4.290 21 S 0.433 5.567 22 H 0.183 0.817 23 H 0.149 0.851 24 H 0.142 0.858 25 H 0.063 0.937 26 H 0.068 0.932 27 H 0.243 0.757 28 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.225 -1.985 0.112 2.335 hybrid contribution 1.222 0.118 -0.264 1.256 sum 2.447 -1.867 -0.152 3.081 Atomic orbital electron populations 1.81190 1.11616 1.11420 1.08703 1.24463 0.91009 0.92110 0.92719 1.19875 0.88595 1.18585 1.02623 1.20288 0.91331 0.97109 0.98887 1.18208 0.93120 1.04436 0.93401 1.20741 0.91000 1.10552 0.98243 1.20497 0.95599 0.97468 0.95573 1.19879 0.94016 1.12413 0.93647 1.20339 0.87008 0.98583 0.86321 1.86364 1.21759 1.95236 1.35861 1.16840 0.87914 0.89952 0.93443 1.19549 1.14605 1.23057 0.95532 0.89248 1.26425 0.92491 0.93903 1.04408 1.69768 1.22908 1.09549 1.40243 0.85601 0.79567 0.79732 0.78082 1.17704 1.19027 1.19232 1.23116 0.97406 1.12181 0.96346 1.84027 0.93826 1.71691 1.07113 0.81656 0.85056 0.85776 0.93725 0.93237 0.75704 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.86 18.54 19.00 0.35 -16.51 15 2 C 0.31 11.31 15.76 88.33 1.39 12.70 15 3 C -0.18 -6.69 6.18 22.51 0.14 -6.55 15 4 C -0.04 -1.35 10.01 21.82 0.22 -1.14 15 5 C -0.08 -3.49 5.86 -21.50 -0.13 -3.62 15 6 C -0.18 -7.07 10.08 22.98 0.23 -6.84 15 7 C -0.07 -2.90 9.31 22.06 0.21 -2.70 15 8 C -0.19 -8.42 5.94 -19.40 -0.12 -8.54 15 9 C 0.15 5.61 6.36 71.23 0.45 6.07 15 10 O -0.58 -17.98 12.13 -148.98 -1.81 -19.79 15 11 C 0.12 5.90 5.37 -21.13 -0.11 5.79 15 12 C -0.50 -23.34 8.12 23.34 0.19 -23.15 15 13 H 0.09 4.02 7.38 -2.91 -0.02 3.99 15 14 C 0.05 2.04 4.23 85.25 0.36 2.40 15 15 N -0.80 -37.63 10.75 21.83 0.23 -37.40 15 16 Si 0.95 34.99 29.62 68.60 2.03 37.02 15 17 H -0.25 -9.11 7.11 99.48 0.71 -8.40 15 18 H -0.27 -9.44 7.11 99.48 0.71 -8.74 15 19 H -0.27 -9.84 7.11 99.48 0.71 -9.14 15 20 C -0.17 -7.96 5.77 23.61 0.14 -7.83 15 21 S 0.16 6.99 19.88 -56.49 -1.12 5.87 15 22 H 0.17 4.65 8.06 -2.91 -0.02 4.63 15 23 H 0.13 4.14 8.06 -2.91 -0.02 4.12 15 24 H 0.12 4.58 6.97 -2.91 -0.02 4.56 15 25 H 0.04 1.66 8.14 -2.38 -0.02 1.64 15 26 H 0.05 1.71 7.83 -2.39 -0.02 1.69 15 27 H 0.39 7.55 9.12 -74.06 -0.68 6.87 15 28 H 0.29 12.75 8.31 -92.71 -0.77 11.98 15 Total: -1.00 -54.21 269.07 3.21 -51.00 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.55 Total: 13.20 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 2.97 Total: -33.40 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.59 Total: -53.91 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -1.81 Total: -19.79 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Atomic # 16 Polarization: 6.99 SS G_CDS: -1.12 Total: 5.87 kcal Total: -54.21 3.21 -51.00 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229066.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.861 kcal (2) G-P(sol) polarization free energy of solvation -54.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds