Wall clock time and date at job start Mon Mar 30 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38881 * 123.26532 * 281.93679 * 3 2 1 5 5 C 1.39145 * 124.64696 * 359.97438 * 4 3 2 6 6 H 1.08005 * 119.99869 * 0.02562 * 5 4 3 7 7 C 1.40633 * 120.00386 * 179.72571 * 5 4 3 8 8 N 1.30487 * 119.99843 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00469 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46783 * 60.00226 * 9 7 5 11 11 H 1.48496 * 109.47291 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47229 * 300.00414 * 9 7 5 13 13 S 1.75193 * 110.70899 * 180.26622 * 4 3 2 14 14 C 1.75843 * 92.73842 * 359.64341 * 13 4 3 15 15 C 1.39889 * 110.72899 * 0.35543 * 14 13 4 16 16 C 1.41382 * 118.93889 * 179.71834 * 15 14 13 17 17 C 1.36099 * 120.50665 * 359.97438 * 16 15 14 18 18 C 1.38860 * 120.47992 * 359.97438 * 17 16 15 19 19 C 1.37609 * 120.23108 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.82574 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.47229 * 359.97438 * 20 19 18 22 22 H 0.96995 * 120.00179 * 179.97438 * 8 7 5 23 23 H 1.08001 * 119.74771 * 180.02562 * 16 15 14 24 24 H 1.07997 * 119.75525 * 179.97438 * 17 16 15 25 25 H 1.07998 * 119.88365 * 180.02562 * 18 17 16 26 26 H 1.09001 * 109.47589 * 119.99489 * 20 19 18 27 27 H 1.09003 * 109.47023 * 239.99863 * 20 19 18 28 28 H 0.96697 * 113.99861 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3299 -0.2392 1.1361 5 6 2.8068 -0.5056 2.3977 6 1 1.7371 -0.5368 2.5431 7 6 3.6710 -0.7405 3.4821 8 7 4.9634 -0.7081 3.3052 9 14 2.9687 -1.0988 5.1755 10 1 2.1292 -2.3222 5.1144 11 1 4.0799 -1.3081 6.1381 12 1 2.1387 0.0494 5.6204 13 16 5.0399 -0.1522 0.7651 14 6 4.7399 0.1985 -0.9317 15 6 3.3663 0.2527 -1.1908 16 6 2.9287 0.5308 -2.5061 17 6 3.8298 0.7430 -3.5037 18 6 5.1930 0.6899 -3.2446 19 6 5.6466 0.4222 -1.9733 20 6 7.1280 0.3673 -1.7022 21 8 7.8436 0.6234 -2.9123 22 1 5.5594 -0.8697 4.0532 23 1 1.8712 0.5761 -2.7207 24 1 3.4821 0.9541 -4.5041 25 1 5.8996 0.8602 -4.0433 26 1 7.3895 1.1204 -0.9588 27 1 7.3923 -0.6212 -1.3265 28 1 8.8052 0.6035 -2.8124 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:56 Heat of formation + Delta-G solvation = -16.762169 kcal Electronic energy + Delta-G solvation = -15878.409210 eV Core-core repulsion = 13177.144359 eV Total energy + Delta-G solvation = -2701.264851 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.61622 -36.61938 -35.60110 -34.69096 -33.00025 -30.91291 -29.37207 -26.03603 -25.51956 -22.77188 -20.84481 -20.74587 -18.19608 -17.03845 -16.32802 -16.09646 -15.46255 -14.64218 -14.32533 -14.23673 -13.51984 -13.34489 -12.91691 -12.76834 -12.15960 -11.98326 -11.83109 -11.74079 -11.70041 -11.22047 -11.07708 -10.74488 -10.51333 -10.30408 -10.16265 -10.03591 -9.51323 -9.36458 -8.36179 -7.71730 -7.53871 -6.58619 -5.11113 1.90064 2.19965 2.56046 2.69360 2.74750 2.91943 2.99722 3.32985 3.49946 4.13569 4.18994 4.43349 4.50534 5.10149 5.42577 5.62465 5.76408 5.77037 5.81930 6.05949 6.18248 6.30306 6.48591 6.70094 6.95216 7.05323 7.25080 7.27344 7.40996 7.54094 7.75954 7.85231 7.91621 8.03569 9.03567 9.25199 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.007761 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.420244 B = 3606.751073 C = 4859.016293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C 0.324 3.676 3 C -0.302 4.302 4 C 0.082 3.918 5 C -0.352 4.352 6 H 0.105 0.895 7 C 0.056 3.944 8 N -0.751 5.751 9 Si 0.942 3.058 10 H -0.254 1.254 11 H -0.268 1.268 12 H -0.254 1.254 13 S 0.162 5.838 14 C -0.237 4.237 15 C 0.041 3.959 16 C -0.139 4.139 17 C -0.110 4.110 18 C -0.150 4.150 19 C -0.039 4.039 20 C 0.119 3.881 21 O -0.569 6.569 22 H 0.310 0.690 23 H 0.104 0.896 24 H 0.108 0.892 25 H 0.119 0.881 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.264 0.118 -0.449 8.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.216 5.216 2 C 0.015 3.985 3 C -0.314 4.314 4 C -0.040 4.040 5 C -0.386 4.386 6 H 0.123 0.877 7 C -0.170 4.170 8 N -0.375 5.375 9 Si 0.763 3.237 10 H -0.178 1.178 11 H -0.192 1.192 12 H -0.178 1.178 13 S 0.422 5.578 14 C -0.351 4.351 15 C 0.033 3.967 16 C -0.159 4.159 17 C -0.131 4.131 18 C -0.170 4.170 19 C -0.044 4.044 20 C 0.041 3.959 21 O -0.374 6.374 22 H 0.124 0.876 23 H 0.122 0.878 24 H 0.126 0.874 25 H 0.137 0.863 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 7.409 -0.024 0.263 7.414 hybrid contribution -0.536 -0.026 0.048 0.539 sum 6.872 -0.050 0.312 6.880 Atomic orbital electron populations 1.81019 1.12423 1.18096 1.10047 1.25049 0.91768 0.90311 0.91354 1.15312 0.84137 1.38743 0.93167 1.21261 0.95181 0.92906 0.94689 1.19508 0.96363 1.32127 0.90610 0.87747 1.26519 0.94372 0.92305 1.03806 1.68449 1.04138 1.29034 1.35877 0.85715 0.79828 0.80980 0.77142 1.17826 1.19204 1.17822 1.84727 1.03981 1.75652 0.93397 1.23230 0.95854 1.13521 1.02506 1.18484 0.90908 0.95250 0.92055 1.20532 0.98601 1.04780 0.92008 1.20395 0.93308 1.01368 0.97999 1.20435 0.94851 1.05656 0.96024 1.18816 0.91934 1.00930 0.92743 1.20886 0.89712 0.99463 0.85810 1.86464 1.22053 1.94976 1.33905 0.87583 0.87799 0.87390 0.86261 0.92501 0.92497 0.77919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -13.54 18.54 41.84 0.78 -12.76 15 2 C 0.32 8.08 14.54 -22.47 -0.33 7.75 15 3 C -0.30 -7.38 5.95 -104.82 -0.62 -8.00 15 4 C 0.08 1.97 6.13 -39.01 -0.24 1.73 15 5 C -0.35 -8.11 8.92 -38.34 -0.34 -8.45 15 6 H 0.10 2.41 7.37 -52.48 -0.39 2.03 15 7 C 0.06 1.14 5.51 -17.22 -0.09 1.05 15 8 N -0.75 -15.23 10.54 55.59 0.59 -14.65 15 9 Si 0.94 15.49 29.57 -169.99 -5.03 10.46 15 10 H -0.25 -4.24 7.11 56.52 0.40 -3.84 15 11 H -0.27 -4.14 7.11 56.52 0.40 -3.74 15 12 H -0.25 -4.24 7.11 56.52 0.40 -3.84 15 13 S 0.16 3.50 19.64 -107.50 -2.11 1.39 15 14 C -0.24 -5.17 6.29 -38.34 -0.24 -5.42 15 15 C 0.04 0.96 6.01 -105.17 -0.63 0.33 15 16 C -0.14 -2.95 9.79 -39.16 -0.38 -3.34 15 17 C -0.11 -2.09 9.96 -40.12 -0.40 -2.49 15 18 C -0.15 -2.84 9.37 -39.58 -0.37 -3.21 15 19 C -0.04 -0.77 5.91 -104.23 -0.62 -1.39 15 20 C 0.12 1.88 7.08 36.00 0.25 2.13 15 21 O -0.57 -7.95 12.11 -35.23 -0.43 -8.38 15 22 H 0.31 5.51 8.29 -40.82 -0.34 5.17 15 23 H 0.10 2.13 8.03 -52.49 -0.42 1.71 15 24 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 25 H 0.12 2.09 6.97 -52.49 -0.37 1.73 15 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 28 H 0.37 3.16 9.12 45.56 0.42 3.58 15 LS Contribution 271.27 15.07 4.09 4.09 Total: -1.00 -26.94 271.27 -7.29 -34.23 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -1.16 Total: 4.93 kcal Atomic # 6 Polarization: -15.30 SS G_CDS: -4.01 Total: -19.31 kcal Atomic # 7 Polarization: -28.77 SS G_CDS: 1.36 Total: -27.41 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.43 Total: -8.38 kcal Atomic # 14 Polarization: 15.49 SS G_CDS: -5.03 Total: 10.46 kcal Atomic # 16 Polarization: 3.50 SS G_CDS: -2.11 Total: 1.39 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -26.94 -7.29 -34.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.464 kcal (2) G-P(sol) polarization free energy of solvation -26.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds