Wall clock time and date at job start Mon Mar 30 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.38881 * 123.26532 * 281.93679 * 3 2 1 5 5 C 1.39145 * 124.64696 * 359.97438 * 4 3 2 6 6 H 1.08005 * 119.99869 * 0.02562 * 5 4 3 7 7 C 1.40633 * 120.00386 * 179.72571 * 5 4 3 8 8 N 1.30487 * 119.99843 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00469 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46783 * 60.00226 * 9 7 5 11 11 H 1.48496 * 109.47291 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47229 * 300.00414 * 9 7 5 13 13 S 1.75193 * 110.70899 * 180.26622 * 4 3 2 14 14 C 1.75843 * 92.73842 * 359.64341 * 13 4 3 15 15 C 1.39889 * 110.72899 * 0.35543 * 14 13 4 16 16 C 1.41382 * 118.93889 * 179.71834 * 15 14 13 17 17 C 1.36099 * 120.50665 * 359.97438 * 16 15 14 18 18 C 1.38860 * 120.47992 * 359.97438 * 17 16 15 19 19 C 1.37609 * 120.23108 * 359.97438 * 18 17 16 20 20 C 1.50698 * 119.82574 * 180.02562 * 19 18 17 21 21 O 1.42904 * 109.47229 * 359.97438 * 20 19 18 22 22 H 0.96995 * 120.00179 * 179.97438 * 8 7 5 23 23 H 1.08001 * 119.74771 * 180.02562 * 16 15 14 24 24 H 1.07997 * 119.75525 * 179.97438 * 17 16 15 25 25 H 1.07998 * 119.88365 * 180.02562 * 18 17 16 26 26 H 1.09001 * 109.47589 * 119.99489 * 20 19 18 27 27 H 1.09003 * 109.47023 * 239.99863 * 20 19 18 28 28 H 0.96697 * 113.99861 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3299 -0.2392 1.1361 5 6 2.8068 -0.5056 2.3977 6 1 1.7371 -0.5368 2.5431 7 6 3.6710 -0.7405 3.4821 8 7 4.9634 -0.7081 3.3052 9 14 2.9687 -1.0988 5.1755 10 1 2.1292 -2.3222 5.1144 11 1 4.0799 -1.3081 6.1381 12 1 2.1387 0.0494 5.6204 13 16 5.0399 -0.1522 0.7651 14 6 4.7399 0.1985 -0.9317 15 6 3.3663 0.2527 -1.1908 16 6 2.9287 0.5308 -2.5061 17 6 3.8298 0.7430 -3.5037 18 6 5.1930 0.6899 -3.2446 19 6 5.6466 0.4222 -1.9733 20 6 7.1280 0.3673 -1.7022 21 8 7.8436 0.6234 -2.9123 22 1 5.5594 -0.8697 4.0532 23 1 1.8712 0.5761 -2.7207 24 1 3.4821 0.9541 -4.5041 25 1 5.8996 0.8602 -4.0433 26 1 7.3895 1.1204 -0.9588 27 1 7.3923 -0.6212 -1.3265 28 1 8.8052 0.6035 -2.8124 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229310.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:13:56 Heat of formation + Delta-G solvation = -32.338306 kcal Electronic energy + Delta-G solvation = -15879.084642 eV Core-core repulsion = 13177.144359 eV Total energy + Delta-G solvation = -2701.940283 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.16375 -38.02495 -37.14094 -36.47304 -34.66705 -32.37558 -31.02696 -27.72014 -26.90635 -24.42023 -22.44768 -22.34936 -19.82806 -18.31189 -17.87221 -17.70325 -16.98179 -15.95651 -15.85722 -15.68505 -15.09704 -14.79514 -14.68553 -14.32471 -13.78079 -13.58717 -13.52471 -13.48762 -13.25449 -12.75862 -12.62779 -12.09559 -12.03312 -11.88237 -11.79658 -11.20608 -11.08229 -11.02926 -9.94157 -9.37385 -9.11841 -8.24406 -6.86580 0.28987 0.60802 0.96256 1.23806 1.32866 1.48836 1.56141 1.68383 2.07128 2.22485 2.45585 2.79969 3.30729 3.39309 3.96828 4.07392 4.21951 4.43746 4.50523 4.61799 4.62291 4.69578 4.97649 5.10076 5.32486 5.39660 5.64110 5.71750 5.79111 5.88766 6.06241 6.28568 6.35842 7.00139 7.11074 7.71815 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.007761 C = 0.005761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.420244 B = 3606.751073 C = 4859.016293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C 0.323 3.677 3 C -0.335 4.335 4 C 0.053 3.947 5 C -0.370 4.370 6 H 0.092 0.908 7 C 0.029 3.971 8 N -0.757 5.757 9 Si 1.005 2.995 10 H -0.259 1.259 11 H -0.243 1.243 12 H -0.259 1.259 13 S 0.183 5.817 14 C -0.252 4.252 15 C 0.015 3.985 16 C -0.160 4.160 17 C -0.101 4.101 18 C -0.149 4.149 19 C -0.048 4.048 20 C 0.125 3.875 21 O -0.577 6.577 22 H 0.326 0.674 23 H 0.100 0.900 24 H 0.142 0.858 25 H 0.141 0.859 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.377 0.060 -0.167 10.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.241 5.241 2 C 0.017 3.983 3 C -0.347 4.347 4 C -0.069 4.069 5 C -0.404 4.404 6 H 0.110 0.890 7 C -0.196 4.196 8 N -0.381 5.381 9 Si 0.822 3.178 10 H -0.183 1.183 11 H -0.166 1.166 12 H -0.183 1.183 13 S 0.443 5.557 14 C -0.366 4.366 15 C 0.007 3.993 16 C -0.180 4.180 17 C -0.121 4.121 18 C -0.168 4.168 19 C -0.053 4.053 20 C 0.047 3.953 21 O -0.386 6.386 22 H 0.142 0.858 23 H 0.118 0.882 24 H 0.160 0.840 25 H 0.158 0.842 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 9.569 -0.076 0.512 9.583 hybrid contribution -1.049 0.005 -0.101 1.054 sum 8.520 -0.071 0.412 8.530 Atomic orbital electron populations 1.80970 1.12789 1.19634 1.10714 1.25344 0.92119 0.89976 0.90866 1.15604 0.83913 1.40825 0.94387 1.21598 0.96827 0.93487 0.95008 1.19732 0.96466 1.32627 0.91551 0.88966 1.27252 0.94485 0.91654 1.06249 1.68396 1.04805 1.27246 1.37644 0.84830 0.79649 0.80166 0.73113 1.18303 1.16593 1.18285 1.84310 1.02090 1.75888 0.93447 1.23442 0.95817 1.14162 1.03198 1.18714 0.91663 0.96402 0.92514 1.20661 0.99063 1.06232 0.92090 1.20769 0.93116 0.99312 0.98882 1.20773 0.95194 1.04517 0.96357 1.19306 0.94020 0.99557 0.92371 1.20746 0.87569 1.00324 0.86622 1.86384 1.24355 1.94918 1.32927 0.85842 0.88178 0.84031 0.84174 0.91539 0.91543 0.74904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.56 -29.40 18.54 19.00 0.35 -29.05 15 2 C 0.32 16.89 14.54 88.33 1.28 18.18 15 3 C -0.34 -17.05 5.95 -19.99 -0.12 -17.17 15 4 C 0.05 2.62 6.13 22.64 0.14 2.76 15 5 C -0.37 -17.41 8.92 23.07 0.21 -17.20 15 6 H 0.09 4.44 7.37 -2.91 -0.02 4.42 15 7 C 0.03 1.15 5.51 85.48 0.47 1.62 15 8 N -0.76 -29.68 10.54 21.95 0.23 -29.45 15 9 Si 1.00 30.44 29.57 68.60 2.03 32.47 15 10 H -0.26 -8.01 7.11 99.48 0.71 -7.31 15 11 H -0.24 -6.39 7.11 99.48 0.71 -5.69 15 12 H -0.26 -8.00 7.11 99.48 0.71 -7.30 15 13 S 0.18 7.87 19.64 -56.49 -1.11 6.76 15 14 C -0.25 -10.98 6.29 23.07 0.15 -10.83 15 15 C 0.02 0.72 6.01 -20.22 -0.12 0.59 15 16 C -0.16 -6.86 9.79 22.55 0.22 -6.64 15 17 C -0.10 -3.65 9.96 21.92 0.22 -3.43 15 18 C -0.15 -5.29 9.37 22.27 0.21 -5.08 15 19 C -0.05 -1.80 5.91 -19.61 -0.12 -1.91 15 20 C 0.12 3.62 7.08 71.24 0.50 4.12 15 21 O -0.58 -14.09 12.11 -148.98 -1.80 -15.89 15 22 H 0.33 10.84 8.29 -92.71 -0.77 10.07 15 23 H 0.10 4.23 8.03 -2.91 -0.02 4.21 15 24 H 0.14 4.08 8.06 -2.91 -0.02 4.05 15 25 H 0.14 4.41 6.97 -2.91 -0.02 4.39 15 26 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 27 H 0.07 1.81 8.14 -2.39 -0.02 1.79 15 28 H 0.40 5.22 9.12 -74.06 -0.68 4.54 15 Total: -1.00 -58.47 271.27 3.29 -55.18 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 0.55 Total: 14.97 kcal Atomic # 6 Polarization: -38.03 SS G_CDS: 3.04 Total: -34.99 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: 0.58 Total: -58.50 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -1.80 Total: -15.89 kcal Atomic # 14 Polarization: 30.44 SS G_CDS: 2.03 Total: 32.47 kcal Atomic # 16 Polarization: 7.87 SS G_CDS: -1.11 Total: 6.76 kcal Total: -58.47 3.29 -55.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229310.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.844 kcal (2) G-P(sol) polarization free energy of solvation -58.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds