Wall clock time and date at job start Mon Mar 30 2020 06:14:27
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.13592 * 1
3 3 C 1.43205 * 179.97438 * 2 1
4 4 C 1.38846 * 120.32681 * 80.55494 * 3 2 1
5 5 C 1.38307 * 120.27427 * 180.02562 * 4 3 2
6 6 C 1.50703 * 119.44951 * 179.97438 * 5 4 3
7 7 O 1.42904 * 109.47067 * 90.00524 * 6 5 4
8 8 C 1.37770 * 121.09921 * 0.02562 * 5 4 3
9 9 C 1.39451 * 121.34411 * 359.95656 * 8 5 4
10 10 S 1.76020 * 130.27969 * 180.02562 * 9 8 5
11 11 C 1.75486 * 91.74728 * 179.45222 * 10 9 8
12 12 C 1.39739 * 124.87103 * 179.97438 * 11 10 9
13 13 H 1.08000 * 119.99808 * 180.58902 * 12 11 10
14 14 C 1.40329 * 120.00500 * 0.60260 * 12 11 10
15 15 N 1.30667 * 119.99394 * 359.97438 * 14 12 11
16 16 Si 1.86793 * 120.00300 * 179.97438 * 14 12 11
17 17 H 1.48496 * 109.47409 * 89.99381 * 16 14 12
18 18 H 1.48500 * 109.46949 * 209.99700 * 16 14 12
19 19 H 1.48504 * 109.47216 * 329.99303 * 16 14 12
20 20 C 1.37275 * 110.24765 * 0.45957 * 11 10 9
21 21 C 1.39078 * 115.06697 * 359.50139 * 20 11 10
22 22 H 1.07997 * 119.86197 * 0.02562 * 4 3 2
23 23 H 1.09000 * 109.46888 * 209.99920 * 6 5 4
24 24 H 1.08997 * 109.47579 * 330.00037 * 6 5 4
25 25 H 0.96697 * 114.00323 * 179.97438 * 7 6 5
26 26 H 1.07997 * 119.32638 * 179.97438 * 8 5 4
27 27 H 0.97000 * 119.99701 * 180.02562 * 15 14 12
28 28 H 1.08009 * 122.46213 * 179.48025 * 20 11 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.1359 0.0000 0.0000
3 6 2.5680 0.0006 0.0000
4 6 3.2691 -0.1957 -1.1822
5 6 4.6522 -0.1954 -1.1809
6 6 5.3944 -0.4109 -2.4746
7 8 5.6291 0.8500 -3.1049
8 6 5.3627 -0.0025 -0.0164
9 6 4.7163 0.2004 1.2026
10 16 5.3787 0.4677 2.8113
11 6 3.7738 0.6010 3.5085
12 6 3.5068 0.8327 4.8604
13 1 2.4856 0.8913 5.2068
14 6 4.5656 0.9896 5.7680
15 7 5.8012 0.9186 5.3489
16 14 4.2086 1.3001 7.5750
17 1 4.1149 0.0026 8.2912
18 1 5.3036 2.1124 8.1634
19 1 2.9233 2.0323 7.7070
20 6 2.8184 0.4341 2.5370
21 6 3.3129 0.2149 1.2557
22 1 2.7323 -0.3493 -2.1066
23 1 6.3480 -0.8976 -2.2697
24 1 4.7989 -1.0417 -3.1345
25 1 6.1042 0.7876 -3.9448
26 1 6.4421 -0.0081 -0.0482
27 1 6.5330 1.0267 5.9762
28 1 1.7606 0.4702 2.7520
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000396229353.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:14:27
Heat of formation + Delta-G solvation = -9.595025 kcal
Electronic energy + Delta-G solvation = -15588.661605 eV
Core-core repulsion = 12887.707544 eV
Total energy + Delta-G solvation = -2700.954061 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 259.041 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-38.56767 -36.54088 -35.59368 -35.10059 -33.43701 -30.37722 -29.73013 -26.96254
-24.25935 -22.83428 -21.84200 -19.46159 -18.43794 -17.21419 -17.05302 -15.81511
-15.44291 -14.79325 -14.41798 -13.97673 -13.62372 -13.22323 -12.98896 -12.63994
-12.35716 -12.20111 -11.92225 -11.86634 -11.69075 -11.39255 -11.37476 -10.72743
-10.51632 -10.37463 -10.13959 -9.78998 -9.56398 -9.29586 -8.52170 -7.59749
-7.46770 -6.61133 -4.94165 1.44922 2.06098 2.65737 2.71272 2.78598
3.03064 3.31245 3.38184 3.45309 3.65601 3.74696 4.39712 4.72663
4.87874 5.05751 5.43503 5.51964 5.63797 5.76461 5.88243 6.30272
6.37684 6.62107 6.79225 6.87574 7.10206 7.22801 7.28502 7.44353
7.61602 7.74972 7.87993 8.00284 8.11550 8.34195 9.34234
Molecular weight = 259.04amu
Principal moments of inertia in cm(-1)
A = 0.026059 B = 0.006069 C = 0.004998
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1074.223125 B = 4612.370779 C = 5600.447915
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.478 5.478
2 C 0.287 3.713
3 C -0.113 4.113
4 C -0.011 4.011
5 C -0.199 4.199
6 C 0.135 3.865
7 O -0.571 6.571
8 C 0.012 3.988
9 C -0.280 4.280
10 S 0.149 5.851
11 C 0.058 3.942
12 C -0.355 4.355
13 H 0.105 0.895
14 C 0.050 3.950
15 N -0.757 5.757
16 Si 0.943 3.057
17 H -0.260 1.260
18 H -0.268 1.268
19 H -0.254 1.254
20 C -0.359 4.359
21 C 0.073 3.927
22 H 0.112 0.888
23 H 0.045 0.955
24 H 0.044 0.956
25 H 0.368 0.632
26 H 0.107 0.893
27 H 0.307 0.693
28 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.646 -1.590 -3.410 6.785
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.156 5.156
2 C -0.025 4.025
3 C -0.119 4.119
4 C -0.034 4.034
5 C -0.202 4.202
6 C 0.058 3.942
7 O -0.376 6.376
8 C -0.011 4.011
9 C -0.394 4.394
10 S 0.409 5.591
11 C -0.063 4.063
12 C -0.389 4.389
13 H 0.123 0.877
14 C -0.175 4.175
15 N -0.381 5.381
16 Si 0.765 3.235
17 H -0.184 1.184
18 H -0.192 1.192
19 H -0.177 1.177
20 C -0.383 4.383
21 C 0.063 3.937
22 H 0.130 0.870
23 H 0.063 0.937
24 H 0.062 0.938
25 H 0.214 0.786
26 H 0.125 0.875
27 H 0.121 0.879
28 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges 5.227 -1.277 -2.216 5.820
hybrid contribution -0.820 -0.178 -0.335 0.903
sum 4.408 -1.455 -2.551 5.296
Atomic orbital electron populations
1.81076 1.12409 1.12952 1.09163 1.25764 0.92684 0.91914 0.92136
1.16588 0.83084 1.18320 0.93915 1.20356 0.93222 0.94854 0.94989
1.18553 0.92662 1.15667 0.93278 1.20787 0.97303 0.84613 0.91457
1.86676 1.80128 1.31291 1.39472 1.20100 0.97964 0.92979 0.90035
1.23519 0.96973 1.17348 1.01569 1.84855 1.06474 1.76142 0.91614
1.21556 0.94673 0.93666 0.96357 1.19576 0.95721 1.33173 0.90394
0.87687 1.26481 0.94029 0.92637 1.04318 1.68590 1.00584 1.29952
1.38989 0.85668 0.80165 0.79946 0.77761 1.18444 1.19234 1.17693
1.19555 0.98359 1.29387 0.90981 1.18647 0.91141 0.92650 0.91271
0.87024 0.93670 0.93777 0.78639 0.87506 0.87911 0.87306
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.48 -10.70 18.54 41.83 0.78 -9.92 15
2 C 0.29 6.22 15.07 -22.47 -0.34 5.88 15
3 C -0.11 -2.42 5.95 -103.94 -0.62 -3.04 15
4 C -0.01 -0.21 9.34 -39.33 -0.37 -0.57 15
5 C -0.20 -3.59 5.49 -104.77 -0.58 -4.16 15
6 C 0.14 1.88 7.14 36.01 0.26 2.14 15
7 O -0.57 -8.10 13.64 -35.23 -0.48 -8.58 15
8 C 0.01 0.24 9.62 -39.30 -0.38 -0.14 15
9 C -0.28 -6.24 6.47 -38.30 -0.25 -6.49 15
10 S 0.15 3.37 20.14 -107.50 -2.16 1.21 15
11 C 0.06 1.41 6.12 -39.37 -0.24 1.17 15
12 C -0.36 -8.14 9.27 -38.24 -0.35 -8.49 15
13 H 0.11 2.28 7.85 -52.49 -0.41 1.87 15
14 C 0.05 1.03 5.50 -17.26 -0.09 0.94 15
15 N -0.76 -16.02 10.58 55.57 0.59 -15.43 15
16 Si 0.94 15.48 29.56 -169.99 -5.03 10.45 15
17 H -0.26 -4.23 7.11 56.52 0.40 -3.83 15
18 H -0.27 -4.26 7.11 56.52 0.40 -3.86 15
19 H -0.25 -4.18 7.11 56.52 0.40 -3.78 15
20 C -0.36 -8.80 9.77 -39.62 -0.39 -9.19 15
21 C 0.07 1.71 6.00 -104.95 -0.63 1.08 15
22 H 0.11 1.81 8.06 -52.49 -0.42 1.38 15
23 H 0.05 0.55 8.07 -51.93 -0.42 0.13 15
24 H 0.04 0.53 8.07 -51.93 -0.42 0.11 15
25 H 0.37 3.11 9.12 45.56 0.42 3.53 15
26 H 0.11 1.85 8.06 -52.49 -0.42 1.42 15
27 H 0.31 5.73 8.29 -40.82 -0.34 5.39 15
28 H 0.11 2.68 8.02 -52.48 -0.42 2.26 15
LS Contribution 275.07 15.07 4.15 4.15
Total: -1.00 -27.00 275.07 -7.37 -34.37
By element:
Atomic # 1 Polarization: 5.85 SS G_CDS: -1.24 Total: 4.61 kcal
Atomic # 6 Polarization: -16.89 SS G_CDS: -3.98 Total: -20.86 kcal
Atomic # 7 Polarization: -26.72 SS G_CDS: 1.36 Total: -25.35 kcal
Atomic # 8 Polarization: -8.10 SS G_CDS: -0.48 Total: -8.58 kcal
Atomic # 14 Polarization: 15.48 SS G_CDS: -5.03 Total: 10.45 kcal
Atomic # 16 Polarization: 3.37 SS G_CDS: -2.16 Total: 1.21 kcal
Total LS contribution 4.15 Total: 4.15 kcal
Total: -27.00 -7.37 -34.37 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000396229353.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 24.780 kcal
(2) G-P(sol) polarization free energy of solvation -27.001 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.222 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.375 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.595 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds