Wall clock time and date at job start Mon Mar 30 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38846 * 120.32681 * 80.55494 * 3 2 1 5 5 C 1.38307 * 120.27427 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.44951 * 179.97438 * 5 4 3 7 7 O 1.42904 * 109.47067 * 90.00524 * 6 5 4 8 8 C 1.37770 * 121.09921 * 0.02562 * 5 4 3 9 9 C 1.39451 * 121.34411 * 359.95656 * 8 5 4 10 10 S 1.76020 * 130.27969 * 180.02562 * 9 8 5 11 11 C 1.75486 * 91.74728 * 179.45222 * 10 9 8 12 12 C 1.39739 * 124.87103 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99808 * 180.58902 * 12 11 10 14 14 C 1.40329 * 120.00500 * 0.60260 * 12 11 10 15 15 N 1.30667 * 119.99394 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47409 * 89.99381 * 16 14 12 18 18 H 1.48500 * 109.46949 * 209.99700 * 16 14 12 19 19 H 1.48504 * 109.47216 * 329.99303 * 16 14 12 20 20 C 1.37275 * 110.24765 * 0.45957 * 11 10 9 21 21 C 1.39078 * 115.06697 * 359.50139 * 20 11 10 22 22 H 1.07997 * 119.86197 * 0.02562 * 4 3 2 23 23 H 1.09000 * 109.46888 * 209.99920 * 6 5 4 24 24 H 1.08997 * 109.47579 * 330.00037 * 6 5 4 25 25 H 0.96697 * 114.00323 * 179.97438 * 7 6 5 26 26 H 1.07997 * 119.32638 * 179.97438 * 8 5 4 27 27 H 0.97000 * 119.99701 * 180.02562 * 15 14 12 28 28 H 1.08009 * 122.46213 * 179.48025 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.1957 -1.1822 5 6 4.6522 -0.1954 -1.1809 6 6 5.3944 -0.4109 -2.4746 7 8 5.6291 0.8500 -3.1049 8 6 5.3627 -0.0025 -0.0164 9 6 4.7163 0.2004 1.2026 10 16 5.3787 0.4677 2.8113 11 6 3.7738 0.6010 3.5085 12 6 3.5068 0.8327 4.8604 13 1 2.4856 0.8913 5.2068 14 6 4.5656 0.9896 5.7680 15 7 5.8012 0.9186 5.3489 16 14 4.2086 1.3001 7.5750 17 1 4.1149 0.0026 8.2912 18 1 5.3036 2.1124 8.1634 19 1 2.9233 2.0323 7.7070 20 6 2.8184 0.4341 2.5370 21 6 3.3129 0.2149 1.2557 22 1 2.7323 -0.3493 -2.1066 23 1 6.3480 -0.8976 -2.2697 24 1 4.7989 -1.0417 -3.1345 25 1 6.1042 0.7876 -3.9448 26 1 6.4421 -0.0081 -0.0482 27 1 6.5330 1.0267 5.9762 28 1 1.7606 0.4702 2.7520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229353.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:27 Heat of formation + Delta-G solvation = -9.595025 kcal Electronic energy + Delta-G solvation = -15588.661605 eV Core-core repulsion = 12887.707544 eV Total energy + Delta-G solvation = -2700.954061 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.56767 -36.54088 -35.59368 -35.10059 -33.43701 -30.37722 -29.73013 -26.96254 -24.25935 -22.83428 -21.84200 -19.46159 -18.43794 -17.21419 -17.05302 -15.81511 -15.44291 -14.79325 -14.41798 -13.97673 -13.62372 -13.22323 -12.98896 -12.63994 -12.35716 -12.20111 -11.92225 -11.86634 -11.69075 -11.39255 -11.37476 -10.72743 -10.51632 -10.37463 -10.13959 -9.78998 -9.56398 -9.29586 -8.52170 -7.59749 -7.46770 -6.61133 -4.94165 1.44922 2.06098 2.65737 2.71272 2.78598 3.03064 3.31245 3.38184 3.45309 3.65601 3.74696 4.39712 4.72663 4.87874 5.05751 5.43503 5.51964 5.63797 5.76461 5.88243 6.30272 6.37684 6.62107 6.79225 6.87574 7.10206 7.22801 7.28502 7.44353 7.61602 7.74972 7.87993 8.00284 8.11550 8.34195 9.34234 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.006069 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.223125 B = 4612.370779 C = 5600.447915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C 0.287 3.713 3 C -0.113 4.113 4 C -0.011 4.011 5 C -0.199 4.199 6 C 0.135 3.865 7 O -0.571 6.571 8 C 0.012 3.988 9 C -0.280 4.280 10 S 0.149 5.851 11 C 0.058 3.942 12 C -0.355 4.355 13 H 0.105 0.895 14 C 0.050 3.950 15 N -0.757 5.757 16 Si 0.943 3.057 17 H -0.260 1.260 18 H -0.268 1.268 19 H -0.254 1.254 20 C -0.359 4.359 21 C 0.073 3.927 22 H 0.112 0.888 23 H 0.045 0.955 24 H 0.044 0.956 25 H 0.368 0.632 26 H 0.107 0.893 27 H 0.307 0.693 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.646 -1.590 -3.410 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.156 5.156 2 C -0.025 4.025 3 C -0.119 4.119 4 C -0.034 4.034 5 C -0.202 4.202 6 C 0.058 3.942 7 O -0.376 6.376 8 C -0.011 4.011 9 C -0.394 4.394 10 S 0.409 5.591 11 C -0.063 4.063 12 C -0.389 4.389 13 H 0.123 0.877 14 C -0.175 4.175 15 N -0.381 5.381 16 Si 0.765 3.235 17 H -0.184 1.184 18 H -0.192 1.192 19 H -0.177 1.177 20 C -0.383 4.383 21 C 0.063 3.937 22 H 0.130 0.870 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.214 0.786 26 H 0.125 0.875 27 H 0.121 0.879 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.227 -1.277 -2.216 5.820 hybrid contribution -0.820 -0.178 -0.335 0.903 sum 4.408 -1.455 -2.551 5.296 Atomic orbital electron populations 1.81076 1.12409 1.12952 1.09163 1.25764 0.92684 0.91914 0.92136 1.16588 0.83084 1.18320 0.93915 1.20356 0.93222 0.94854 0.94989 1.18553 0.92662 1.15667 0.93278 1.20787 0.97303 0.84613 0.91457 1.86676 1.80128 1.31291 1.39472 1.20100 0.97964 0.92979 0.90035 1.23519 0.96973 1.17348 1.01569 1.84855 1.06474 1.76142 0.91614 1.21556 0.94673 0.93666 0.96357 1.19576 0.95721 1.33173 0.90394 0.87687 1.26481 0.94029 0.92637 1.04318 1.68590 1.00584 1.29952 1.38989 0.85668 0.80165 0.79946 0.77761 1.18444 1.19234 1.17693 1.19555 0.98359 1.29387 0.90981 1.18647 0.91141 0.92650 0.91271 0.87024 0.93670 0.93777 0.78639 0.87506 0.87911 0.87306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -10.70 18.54 41.83 0.78 -9.92 15 2 C 0.29 6.22 15.07 -22.47 -0.34 5.88 15 3 C -0.11 -2.42 5.95 -103.94 -0.62 -3.04 15 4 C -0.01 -0.21 9.34 -39.33 -0.37 -0.57 15 5 C -0.20 -3.59 5.49 -104.77 -0.58 -4.16 15 6 C 0.14 1.88 7.14 36.01 0.26 2.14 15 7 O -0.57 -8.10 13.64 -35.23 -0.48 -8.58 15 8 C 0.01 0.24 9.62 -39.30 -0.38 -0.14 15 9 C -0.28 -6.24 6.47 -38.30 -0.25 -6.49 15 10 S 0.15 3.37 20.14 -107.50 -2.16 1.21 15 11 C 0.06 1.41 6.12 -39.37 -0.24 1.17 15 12 C -0.36 -8.14 9.27 -38.24 -0.35 -8.49 15 13 H 0.11 2.28 7.85 -52.49 -0.41 1.87 15 14 C 0.05 1.03 5.50 -17.26 -0.09 0.94 15 15 N -0.76 -16.02 10.58 55.57 0.59 -15.43 15 16 Si 0.94 15.48 29.56 -169.99 -5.03 10.45 15 17 H -0.26 -4.23 7.11 56.52 0.40 -3.83 15 18 H -0.27 -4.26 7.11 56.52 0.40 -3.86 15 19 H -0.25 -4.18 7.11 56.52 0.40 -3.78 15 20 C -0.36 -8.80 9.77 -39.62 -0.39 -9.19 15 21 C 0.07 1.71 6.00 -104.95 -0.63 1.08 15 22 H 0.11 1.81 8.06 -52.49 -0.42 1.38 15 23 H 0.05 0.55 8.07 -51.93 -0.42 0.13 15 24 H 0.04 0.53 8.07 -51.93 -0.42 0.11 15 25 H 0.37 3.11 9.12 45.56 0.42 3.53 15 26 H 0.11 1.85 8.06 -52.49 -0.42 1.42 15 27 H 0.31 5.73 8.29 -40.82 -0.34 5.39 15 28 H 0.11 2.68 8.02 -52.48 -0.42 2.26 15 LS Contribution 275.07 15.07 4.15 4.15 Total: -1.00 -27.00 275.07 -7.37 -34.37 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -1.24 Total: 4.61 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -3.98 Total: -20.86 kcal Atomic # 7 Polarization: -26.72 SS G_CDS: 1.36 Total: -25.35 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: -0.48 Total: -8.58 kcal Atomic # 14 Polarization: 15.48 SS G_CDS: -5.03 Total: 10.45 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -2.16 Total: 1.21 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -27.00 -7.37 -34.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229353.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.780 kcal (2) G-P(sol) polarization free energy of solvation -27.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds