Wall clock time and date at job start Mon Mar 30 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.38846 * 120.32681 * 80.55494 * 3 2 1 5 5 C 1.38307 * 120.27427 * 180.02562 * 4 3 2 6 6 C 1.50703 * 119.44951 * 179.97438 * 5 4 3 7 7 O 1.42904 * 109.47067 * 90.00524 * 6 5 4 8 8 C 1.37770 * 121.09921 * 0.02562 * 5 4 3 9 9 C 1.39451 * 121.34411 * 359.95656 * 8 5 4 10 10 S 1.76020 * 130.27969 * 180.02562 * 9 8 5 11 11 C 1.75486 * 91.74728 * 179.45222 * 10 9 8 12 12 C 1.39739 * 124.87103 * 179.97438 * 11 10 9 13 13 H 1.08000 * 119.99808 * 180.58902 * 12 11 10 14 14 C 1.40329 * 120.00500 * 0.60260 * 12 11 10 15 15 N 1.30667 * 119.99394 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00300 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47409 * 89.99381 * 16 14 12 18 18 H 1.48500 * 109.46949 * 209.99700 * 16 14 12 19 19 H 1.48504 * 109.47216 * 329.99303 * 16 14 12 20 20 C 1.37275 * 110.24765 * 0.45957 * 11 10 9 21 21 C 1.39078 * 115.06697 * 359.50139 * 20 11 10 22 22 H 1.07997 * 119.86197 * 0.02562 * 4 3 2 23 23 H 1.09000 * 109.46888 * 209.99920 * 6 5 4 24 24 H 1.08997 * 109.47579 * 330.00037 * 6 5 4 25 25 H 0.96697 * 114.00323 * 179.97438 * 7 6 5 26 26 H 1.07997 * 119.32638 * 179.97438 * 8 5 4 27 27 H 0.97000 * 119.99701 * 180.02562 * 15 14 12 28 28 H 1.08009 * 122.46213 * 179.48025 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2691 -0.1957 -1.1822 5 6 4.6522 -0.1954 -1.1809 6 6 5.3944 -0.4109 -2.4746 7 8 5.6291 0.8500 -3.1049 8 6 5.3627 -0.0025 -0.0164 9 6 4.7163 0.2004 1.2026 10 16 5.3787 0.4677 2.8113 11 6 3.7738 0.6010 3.5085 12 6 3.5068 0.8327 4.8604 13 1 2.4856 0.8913 5.2068 14 6 4.5656 0.9896 5.7680 15 7 5.8012 0.9186 5.3489 16 14 4.2086 1.3001 7.5750 17 1 4.1149 0.0026 8.2912 18 1 5.3036 2.1124 8.1634 19 1 2.9233 2.0323 7.7070 20 6 2.8184 0.4341 2.5370 21 6 3.3129 0.2149 1.2557 22 1 2.7323 -0.3493 -2.1066 23 1 6.3480 -0.8976 -2.2697 24 1 4.7989 -1.0417 -3.1345 25 1 6.1042 0.7876 -3.9448 26 1 6.4421 -0.0081 -0.0482 27 1 6.5330 1.0267 5.9762 28 1 1.7606 0.4702 2.7520 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229353.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:27 Heat of formation + Delta-G solvation = -25.620370 kcal Electronic energy + Delta-G solvation = -15589.356516 eV Core-core repulsion = 12887.707544 eV Total energy + Delta-G solvation = -2701.648972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.13351 -37.80219 -37.32180 -36.64522 -35.00525 -31.96718 -31.33033 -28.47802 -25.70091 -24.45215 -23.44295 -21.14108 -20.09592 -18.72727 -18.14376 -17.35462 -17.00869 -16.40078 -15.92562 -15.37822 -14.93903 -14.88182 -14.48803 -14.13917 -13.97875 -13.87950 -13.56117 -13.45191 -13.15590 -13.02533 -12.79996 -12.10291 -12.00191 -11.88163 -11.74169 -11.12257 -11.05312 -10.77293 -10.18418 -9.27754 -9.05312 -8.33288 -6.68220 -0.19065 0.46590 1.25754 1.31427 1.35190 1.52951 1.67610 1.78044 1.87324 2.05620 2.09883 2.76241 3.14844 3.21684 3.86021 4.07999 4.22088 4.44501 4.47618 4.66382 4.76211 4.77302 5.01205 5.21873 5.27258 5.32999 5.58567 5.70867 5.76386 5.93476 6.12123 6.27441 6.40271 6.61831 7.13162 7.80183 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.026059 B = 0.006069 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.223125 B = 4612.370779 C = 5600.447915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C 0.294 3.706 3 C -0.130 4.130 4 C -0.003 4.003 5 C -0.188 4.188 6 C 0.137 3.863 7 O -0.593 6.593 8 C 0.009 3.991 9 C -0.298 4.298 10 S 0.149 5.851 11 C 0.030 3.970 12 C -0.383 4.383 13 H 0.104 0.896 14 C 0.019 3.981 15 N -0.775 5.775 16 Si 1.013 2.987 17 H -0.254 1.254 18 H -0.253 1.253 19 H -0.257 1.257 20 C -0.394 4.394 21 C 0.052 3.948 22 H 0.144 0.856 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.395 0.605 26 H 0.131 0.869 27 H 0.320 0.680 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 -1.859 -4.509 8.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.017 4.017 3 C -0.136 4.136 4 C -0.026 4.026 5 C -0.191 4.191 6 C 0.060 3.940 7 O -0.402 6.402 8 C -0.013 4.013 9 C -0.412 4.412 10 S 0.408 5.592 11 C -0.091 4.091 12 C -0.416 4.416 13 H 0.122 0.878 14 C -0.203 4.203 15 N -0.400 5.400 16 Si 0.831 3.169 17 H -0.178 1.178 18 H -0.177 1.177 19 H -0.180 1.180 20 C -0.418 4.418 21 C 0.042 3.958 22 H 0.161 0.839 23 H 0.087 0.913 24 H 0.090 0.910 25 H 0.245 0.755 26 H 0.149 0.851 27 H 0.135 0.865 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.794 -1.553 -3.366 7.740 hybrid contribution -1.227 -0.113 -0.187 1.246 sum 5.568 -1.666 -3.554 6.812 Atomic orbital electron populations 1.81060 1.12842 1.13801 1.09752 1.25905 0.92822 0.91402 0.91617 1.16788 0.82874 1.19563 0.94352 1.20784 0.93870 0.92917 0.95027 1.19160 0.92666 1.12313 0.94955 1.20821 0.98416 0.85020 0.89726 1.86577 1.80902 1.31362 1.41403 1.20498 0.99413 0.91995 0.89431 1.23720 0.96653 1.18477 1.02380 1.84511 1.05732 1.76689 0.92244 1.21849 0.95567 0.94501 0.97145 1.19883 0.96666 1.34350 0.90737 0.87828 1.27348 0.93310 0.91618 1.08041 1.68579 1.01416 1.29173 1.40797 0.84672 0.80071 0.80007 0.72188 1.17823 1.17695 1.18037 1.19544 0.97545 1.32447 0.92292 1.18838 0.92170 0.93306 0.91515 0.83868 0.91334 0.91034 0.75510 0.85070 0.86539 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.44 18.54 19.00 0.35 -22.09 15 2 C 0.29 12.88 15.07 88.33 1.33 14.21 15 3 C -0.13 -5.54 5.95 -19.42 -0.12 -5.66 15 4 C 0.00 -0.12 9.34 22.43 0.21 0.09 15 5 C -0.19 -6.20 5.49 -19.96 -0.11 -6.30 15 6 C 0.14 3.15 7.14 71.24 0.51 3.66 15 7 O -0.59 -14.21 13.64 -148.98 -2.03 -16.24 15 8 C 0.01 0.35 9.62 22.45 0.22 0.57 15 9 C -0.30 -13.37 6.47 23.10 0.15 -13.22 15 10 S 0.15 6.88 20.14 -56.49 -1.14 5.75 15 11 C 0.03 1.51 6.12 22.41 0.14 1.65 15 12 C -0.38 -18.33 9.27 23.14 0.21 -18.11 15 13 H 0.10 4.77 7.85 -2.91 -0.02 4.75 15 14 C 0.02 0.80 5.50 85.37 0.47 1.27 15 15 N -0.77 -32.87 10.58 21.90 0.23 -32.64 15 16 Si 1.01 31.14 29.56 68.60 2.03 33.17 15 17 H -0.25 -7.55 7.11 99.48 0.71 -6.84 15 18 H -0.25 -7.16 7.11 99.48 0.71 -6.45 15 19 H -0.26 -7.96 7.11 99.48 0.71 -7.25 15 20 C -0.39 -20.53 9.77 22.24 0.22 -20.31 15 21 C 0.05 2.49 6.00 -20.08 -0.12 2.37 15 22 H 0.14 4.10 8.06 -2.91 -0.02 4.07 15 23 H 0.07 1.30 8.07 -2.39 -0.02 1.28 15 24 H 0.07 1.30 8.07 -2.39 -0.02 1.28 15 25 H 0.40 4.85 9.12 -74.06 -0.68 4.17 15 26 H 0.13 4.16 8.06 -2.91 -0.02 4.14 15 27 H 0.32 11.71 8.29 -92.71 -0.77 10.94 15 28 H 0.09 4.79 8.02 -2.91 -0.02 4.77 15 Total: -1.00 -60.11 275.07 3.09 -57.02 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.55 Total: 14.84 kcal Atomic # 6 Polarization: -42.90 SS G_CDS: 3.11 Total: -39.79 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.58 Total: -54.73 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -2.03 Total: -16.24 kcal Atomic # 14 Polarization: 31.14 SS G_CDS: 2.03 Total: 33.17 kcal Atomic # 16 Polarization: 6.88 SS G_CDS: -1.14 Total: 5.75 kcal Total: -60.11 3.09 -57.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229353.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.397 kcal (2) G-P(sol) polarization free energy of solvation -60.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds