Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.35486 * 123.12579 * 194.66045 * 3 2 1 5 5 S 1.70046 * 111.94889 * 179.90886 * 4 3 2 6 6 C 1.75839 * 93.02808 * 0.30728 * 5 4 3 7 7 C 1.39865 * 130.40661 * 179.80454 * 6 5 4 8 8 C 1.38054 * 121.46134 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.40190 * 180.02562 * 8 7 6 10 10 O 1.42898 * 109.47482 * 90.00120 * 9 8 7 11 11 C 1.37636 * 121.18612 * 359.97438 * 8 7 6 12 12 C 1.40439 * 119.95775 * 0.02562 * 11 8 7 13 13 C 1.40705 * 120.45396 * 179.97438 * 12 11 8 14 14 H 1.08006 * 119.99923 * 209.07889 * 13 12 11 15 15 C 1.39978 * 120.00035 * 29.08495 * 13 12 11 16 16 N 1.30834 * 119.99966 * 11.83496 * 15 13 12 17 17 Si 1.86796 * 119.99752 * 191.83503 * 15 13 12 18 18 H 1.48494 * 109.47501 * 359.97438 * 17 15 13 19 19 H 1.48510 * 109.47076 * 119.99830 * 17 15 13 20 20 H 1.48502 * 109.47390 * 239.99788 * 17 15 13 21 21 C 1.39315 * 109.87837 * 359.83318 * 6 5 4 22 22 H 1.07994 * 124.02796 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.26427 * 0.03188 * 7 6 5 24 24 H 1.09002 * 109.46726 * 210.00072 * 9 8 7 25 25 H 1.09000 * 109.47117 * 329.99582 * 9 8 7 26 26 H 0.96698 * 114.00609 * 179.97438 * 10 9 8 27 27 H 1.08005 * 120.02447 * 179.97438 * 11 8 7 28 28 H 0.97006 * 120.00159 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3079 1.0987 0.2872 5 16 4.9763 0.7799 0.2062 6 6 4.7278 -0.9021 -0.2423 7 6 5.6540 -1.9144 -0.5135 8 6 5.2488 -3.1895 -0.8538 9 6 6.2867 -4.2450 -1.1360 10 8 6.6153 -4.9262 0.0764 11 6 3.9140 -3.5142 -0.9389 12 6 2.9371 -2.5397 -0.6778 13 6 1.5696 -2.8601 -0.7623 14 1 0.8519 -2.0982 -1.0287 15 6 1.1394 -4.1662 -0.5009 16 7 1.9596 -5.0288 0.0422 17 14 -0.6058 -4.6775 -0.9276 18 1 -1.3267 -3.5258 -1.5266 19 1 -0.5692 -5.7992 -1.9002 20 1 -1.3092 -5.1142 0.3052 21 6 3.3638 -1.1765 -0.3147 22 1 2.8882 2.0612 0.5394 23 1 6.7096 -1.6936 -0.4553 24 1 5.8914 -4.9592 -1.8584 25 1 7.1820 -3.7747 -1.5427 26 1 7.2789 -5.6214 -0.0304 27 1 3.6180 -4.5177 -1.2072 28 1 1.6615 -5.9340 0.2230 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229399.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = 9.943455 kcal Electronic energy + Delta-G solvation = -16129.016181 eV Core-core repulsion = 13428.909372 eV Total energy + Delta-G solvation = -2700.106809 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.43107 -36.63979 -35.63360 -34.43602 -33.45919 -30.05949 -29.30789 -25.67892 -24.89173 -23.71154 -21.17663 -20.10712 -17.84966 -16.92797 -16.76599 -16.08915 -15.23428 -14.78531 -14.37688 -13.91922 -13.40895 -13.27145 -12.99041 -12.46155 -12.35848 -12.17328 -12.00284 -11.66920 -11.34124 -11.33207 -11.05726 -10.73966 -10.60220 -10.05159 -9.86437 -9.75142 -9.51582 -9.44351 -8.31018 -7.53305 -7.07221 -6.89920 -4.59807 1.37770 2.31787 2.54480 2.62978 2.71809 2.95118 3.00255 3.03864 3.46921 3.75237 4.08824 4.32214 4.92483 4.99551 5.39114 5.47403 5.69318 5.76832 5.99720 6.14148 6.28026 6.63436 6.72377 6.77215 6.91271 7.09575 7.37973 7.60102 7.73657 7.88208 8.09663 8.24386 8.28117 8.46782 8.56926 9.83842 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.010910 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.608240 B = 2565.947597 C = 4420.364966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.295 3.705 3 C 0.013 3.987 4 C -0.246 4.246 5 S 0.109 5.891 6 C -0.091 4.091 7 C -0.202 4.202 8 C -0.040 4.040 9 C 0.124 3.876 10 O -0.562 6.562 11 C -0.157 4.157 12 C 0.148 3.852 13 C -0.427 4.427 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.765 5.765 17 Si 0.911 3.089 18 H -0.255 1.255 19 H -0.267 1.267 20 H -0.269 1.269 21 C -0.157 4.157 22 H 0.158 0.842 23 H 0.097 0.903 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.366 0.634 27 H 0.127 0.873 28 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.486 1.738 -1.970 6.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.021 4.021 3 C -0.006 4.006 4 C -0.385 4.385 5 S 0.375 5.625 6 C -0.206 4.206 7 C -0.228 4.228 8 C -0.043 4.043 9 C 0.047 3.953 10 O -0.366 6.366 11 C -0.179 4.179 12 C 0.143 3.857 13 C -0.455 4.455 14 H 0.105 0.895 15 C -0.150 4.150 16 N -0.387 5.387 17 Si 0.734 3.266 18 H -0.178 1.178 19 H -0.191 1.191 20 H -0.194 1.194 21 C -0.163 4.163 22 H 0.176 0.824 23 H 0.115 0.885 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.211 0.789 27 H 0.145 0.855 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.524 2.886 -1.371 6.382 hybrid contribution -1.220 -1.519 -0.481 2.007 sum 4.304 1.367 -1.852 4.881 Atomic orbital electron populations 1.81085 1.12079 1.09293 1.09707 1.25133 0.92126 0.91920 0.92915 1.15940 0.84749 0.93841 1.06049 1.24489 0.98926 1.01695 1.13428 1.82293 1.02045 1.05575 1.72554 1.22055 0.96324 0.96172 1.06026 1.19322 0.95915 0.92078 1.15465 1.18970 0.93770 0.92147 0.99450 1.20981 0.95564 0.92772 0.85975 1.86687 1.63362 1.53342 1.33191 1.20967 0.90138 1.00151 1.06612 1.18278 0.93337 0.87342 0.86731 1.19776 0.93263 0.95219 1.37249 0.89463 1.26033 1.00594 0.95947 0.92380 1.69819 1.36861 1.05597 1.26465 0.86162 0.81098 0.79804 0.79528 1.17841 1.19132 1.19371 1.19708 0.89828 0.94501 1.12305 0.82445 0.88530 0.93598 0.94069 0.78878 0.85511 0.90055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -10.10 18.19 41.84 0.76 -9.34 15 2 C 0.29 6.49 13.13 -22.47 -0.30 6.19 15 3 C 0.01 0.27 5.84 -106.05 -0.62 -0.35 15 4 C -0.25 -4.37 10.65 29.75 0.32 -4.05 15 5 S 0.11 1.87 22.98 -107.50 -2.47 -0.60 15 6 C -0.09 -1.96 6.46 -38.57 -0.25 -2.21 15 7 C -0.20 -4.27 9.64 -39.04 -0.38 -4.65 15 8 C -0.04 -0.88 5.48 -104.91 -0.57 -1.45 15 9 C 0.12 2.17 7.13 36.00 0.26 2.43 15 10 O -0.56 -9.90 13.64 -35.23 -0.48 -10.38 15 11 C -0.16 -3.80 8.25 -38.97 -0.32 -4.12 15 12 C 0.15 3.76 5.72 -104.42 -0.60 3.16 15 13 C -0.43 -10.90 8.32 -38.00 -0.32 -11.21 15 14 H 0.09 2.24 5.74 -52.48 -0.30 1.94 15 15 C 0.07 1.74 5.23 -17.33 -0.09 1.65 15 16 N -0.76 -18.71 10.92 55.55 0.61 -18.10 15 17 Si 0.91 18.55 29.58 -169.99 -5.03 13.52 15 18 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 19 H -0.27 -5.16 7.11 56.52 0.40 -4.76 15 20 H -0.27 -5.42 7.11 56.52 0.40 -5.02 15 21 C -0.16 -3.69 6.19 -102.87 -0.64 -4.33 15 22 H 0.16 2.29 8.06 -52.49 -0.42 1.87 15 23 H 0.10 1.82 8.06 -52.49 -0.42 1.40 15 24 H 0.05 0.74 8.07 -51.93 -0.42 0.32 15 25 H 0.04 0.61 8.07 -51.93 -0.42 0.19 15 26 H 0.37 4.17 9.12 45.56 0.42 4.59 15 27 H 0.13 3.14 6.28 -52.48 -0.33 2.81 15 28 H 0.29 6.35 8.30 -40.82 -0.34 6.01 15 LS Contribution 270.38 15.07 4.07 4.07 Total: -1.00 -28.29 270.38 -7.07 -35.36 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -1.03 Total: 4.40 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: -3.50 Total: -18.94 kcal Atomic # 7 Polarization: -28.81 SS G_CDS: 1.37 Total: -27.44 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: -0.48 Total: -10.38 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.47 Total: -0.60 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.29 -7.07 -35.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229399.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.303 kcal (2) G-P(sol) polarization free energy of solvation -28.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds