Wall clock time and date at job start Mon Mar 30 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43192 * 179.97438 * 2 1 4 4 C 1.35486 * 123.12579 * 194.66045 * 3 2 1 5 5 S 1.70046 * 111.94889 * 179.90886 * 4 3 2 6 6 C 1.75839 * 93.02808 * 0.30728 * 5 4 3 7 7 C 1.39865 * 130.40661 * 179.80454 * 6 5 4 8 8 C 1.38054 * 121.46134 * 180.02562 * 7 6 5 9 9 C 1.50697 * 119.40190 * 180.02562 * 8 7 6 10 10 O 1.42898 * 109.47482 * 90.00120 * 9 8 7 11 11 C 1.37636 * 121.18612 * 359.97438 * 8 7 6 12 12 C 1.40439 * 119.95775 * 0.02562 * 11 8 7 13 13 C 1.40705 * 120.45396 * 179.97438 * 12 11 8 14 14 H 1.08006 * 119.99923 * 209.07889 * 13 12 11 15 15 C 1.39978 * 120.00035 * 29.08495 * 13 12 11 16 16 N 1.30834 * 119.99966 * 11.83496 * 15 13 12 17 17 Si 1.86796 * 119.99752 * 191.83503 * 15 13 12 18 18 H 1.48494 * 109.47501 * 359.97438 * 17 15 13 19 19 H 1.48510 * 109.47076 * 119.99830 * 17 15 13 20 20 H 1.48502 * 109.47390 * 239.99788 * 17 15 13 21 21 C 1.39315 * 109.87837 * 359.83318 * 6 5 4 22 22 H 1.07994 * 124.02796 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.26427 * 0.03188 * 7 6 5 24 24 H 1.09002 * 109.46726 * 210.00072 * 9 8 7 25 25 H 1.09000 * 109.47117 * 329.99582 * 9 8 7 26 26 H 0.96698 * 114.00609 * 179.97438 * 10 9 8 27 27 H 1.08005 * 120.02447 * 179.97438 * 11 8 7 28 28 H 0.97006 * 120.00159 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3079 1.0987 0.2872 5 16 4.9763 0.7799 0.2062 6 6 4.7278 -0.9021 -0.2423 7 6 5.6540 -1.9144 -0.5135 8 6 5.2488 -3.1895 -0.8538 9 6 6.2867 -4.2450 -1.1360 10 8 6.6153 -4.9262 0.0764 11 6 3.9140 -3.5142 -0.9389 12 6 2.9371 -2.5397 -0.6778 13 6 1.5696 -2.8601 -0.7623 14 1 0.8519 -2.0982 -1.0287 15 6 1.1394 -4.1662 -0.5009 16 7 1.9596 -5.0288 0.0422 17 14 -0.6058 -4.6775 -0.9276 18 1 -1.3267 -3.5258 -1.5266 19 1 -0.5692 -5.7992 -1.9002 20 1 -1.3092 -5.1142 0.3052 21 6 3.3638 -1.1765 -0.3147 22 1 2.8882 2.0612 0.5394 23 1 6.7096 -1.6936 -0.4553 24 1 5.8914 -4.9592 -1.8584 25 1 7.1820 -3.7747 -1.5427 26 1 7.2789 -5.6214 -0.0304 27 1 3.6180 -4.5177 -1.2072 28 1 1.6615 -5.9340 0.2230 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229399.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:14:13 Heat of formation + Delta-G solvation = -8.089882 kcal Electronic energy + Delta-G solvation = -16129.798165 eV Core-core repulsion = 13428.909372 eV Total energy + Delta-G solvation = -2700.888793 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.07048 -38.14904 -37.20012 -36.13903 -35.08383 -31.77594 -30.89496 -27.40236 -26.42012 -25.29929 -22.87633 -21.75922 -19.53223 -18.45429 -18.22623 -17.66192 -16.90396 -16.40057 -15.94712 -15.45581 -15.09040 -14.79903 -14.61806 -14.12323 -13.93284 -13.77321 -13.64527 -13.34593 -13.05601 -12.96724 -12.60503 -12.32826 -12.21773 -11.67397 -11.51231 -11.35917 -11.19014 -10.80975 -9.96975 -9.17775 -8.78943 -8.47854 -6.40147 -0.19544 0.79184 0.83189 0.92861 1.13116 1.27080 1.36967 1.40560 1.77551 2.08936 2.41254 2.59785 3.32458 3.41593 3.91017 4.00163 4.30554 4.41101 4.55222 4.65944 4.71092 4.99583 5.06243 5.09146 5.16906 5.42495 5.66125 5.87196 6.04388 6.14392 6.51344 6.57248 6.70736 6.83030 7.08101 8.14872 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.010910 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.608240 B = 2565.947597 C = 4420.364966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.303 3.697 3 C -0.037 4.037 4 C -0.206 4.206 5 S 0.215 5.785 6 C -0.129 4.129 7 C -0.196 4.196 8 C -0.054 4.054 9 C 0.128 3.872 10 O -0.586 6.586 11 C -0.183 4.183 12 C 0.115 3.885 13 C -0.469 4.469 14 H 0.072 0.928 15 C 0.040 3.960 16 N -0.800 5.800 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.249 1.249 20 H -0.264 1.264 21 C -0.170 4.170 22 H 0.199 0.801 23 H 0.125 0.875 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.393 0.607 27 H 0.108 0.892 28 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.711 3.666 -1.645 9.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C -0.011 4.011 3 C -0.056 4.056 4 C -0.346 4.346 5 S 0.482 5.518 6 C -0.244 4.244 7 C -0.220 4.220 8 C -0.057 4.057 9 C 0.051 3.949 10 O -0.394 6.394 11 C -0.205 4.205 12 C 0.111 3.889 13 C -0.497 4.497 14 H 0.090 0.910 15 C -0.178 4.178 16 N -0.424 5.424 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.172 1.172 20 H -0.189 1.189 21 C -0.177 4.177 22 H 0.216 0.784 23 H 0.143 0.857 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.242 0.758 27 H 0.126 0.874 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.795 4.791 -1.053 9.210 hybrid contribution -1.613 -1.806 -0.517 2.476 sum 6.182 2.985 -1.570 7.042 Atomic orbital electron populations 1.81061 1.12788 1.10065 1.11200 1.25348 0.92418 0.91267 0.92105 1.15989 0.84461 0.94610 1.10499 1.25223 0.99950 1.02054 1.07323 1.82000 0.99719 1.00559 1.69508 1.22557 0.95717 0.99582 1.06547 1.19745 0.97288 0.91713 1.13302 1.19464 0.93874 0.93939 0.98378 1.20960 0.95721 0.92233 0.86013 1.86597 1.64772 1.54602 1.33447 1.20909 0.91476 0.99488 1.08625 1.18616 0.93690 0.88944 0.87677 1.19766 0.93514 0.95857 1.40605 0.90987 1.26615 1.03523 0.95657 0.91992 1.69853 1.38293 1.06072 1.28224 0.85374 0.77134 0.79185 0.79557 1.19540 1.17228 1.18898 1.20040 0.91466 0.94546 1.11610 0.78354 0.85662 0.93044 0.90688 0.75770 0.87375 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -21.98 18.19 19.00 0.35 -21.63 15 2 C 0.30 13.48 13.13 88.33 1.16 14.64 15 3 C -0.04 -1.52 5.84 -20.79 -0.12 -1.65 15 4 C -0.21 -6.44 10.65 67.18 0.72 -5.73 15 5 S 0.21 6.28 22.98 -56.49 -1.30 4.99 15 6 C -0.13 -5.27 6.46 22.92 0.15 -5.12 15 7 C -0.20 -7.85 9.64 22.62 0.22 -7.63 15 8 C -0.05 -2.31 5.48 -20.05 -0.11 -2.42 15 9 C 0.13 4.27 7.13 71.23 0.51 4.78 15 10 O -0.59 -19.72 13.64 -148.98 -2.03 -21.75 15 11 C -0.18 -9.23 8.25 22.66 0.19 -9.04 15 12 C 0.12 6.10 5.72 -19.73 -0.11 5.99 15 13 C -0.47 -25.38 8.32 23.29 0.19 -25.19 15 14 H 0.07 3.96 5.74 -2.91 -0.02 3.94 15 15 C 0.04 2.03 5.23 85.26 0.45 2.48 15 16 N -0.80 -41.30 10.92 21.83 0.24 -41.07 15 17 Si 0.97 39.99 29.58 68.60 2.03 42.02 15 18 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 19 H -0.25 -9.40 7.11 99.48 0.71 -8.70 15 20 H -0.26 -10.58 7.11 99.48 0.71 -9.87 15 21 C -0.17 -7.99 6.19 -18.73 -0.12 -8.11 15 22 H 0.20 4.59 8.06 -2.91 -0.02 4.57 15 23 H 0.13 4.22 8.06 -2.91 -0.02 4.19 15 24 H 0.05 1.63 8.07 -2.39 -0.02 1.61 15 25 H 0.08 1.98 8.07 -2.39 -0.02 1.96 15 26 H 0.39 8.12 9.12 -74.06 -0.68 7.45 15 27 H 0.11 5.72 6.28 -2.91 -0.02 5.70 15 28 H 0.29 13.62 8.30 -92.70 -0.77 12.85 15 Total: -1.00 -64.73 270.38 2.95 -61.77 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.56 Total: 12.67 kcal Atomic # 6 Polarization: -40.11 SS G_CDS: 3.12 Total: -37.00 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: 0.58 Total: -62.70 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -2.03 Total: -21.75 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.30 Total: 4.99 kcal Total: -64.73 2.95 -61.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229399.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.683 kcal (2) G-P(sol) polarization free energy of solvation -64.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds