Wall clock time and date at job start Mon Mar 30 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.33576 * 124.34957 * 229.44417 * 3 2 1 5 5 C 1.45048 * 114.63027 * 179.97438 * 4 3 2 6 6 C 1.40807 * 129.04148 * 180.02562 * 5 4 3 7 7 C 1.39821 * 119.97685 * 179.97438 * 6 5 4 8 8 C 1.41262 * 120.05023 * 180.02562 * 7 6 5 9 9 H 1.07998 * 119.99818 * 154.50450 * 8 7 6 10 10 C 1.39860 * 120.00484 * 334.50542 * 8 7 6 11 11 N 1.30900 * 119.99503 * 342.45996 * 10 8 7 12 12 Si 1.86799 * 120.00441 * 162.46431 * 10 8 7 13 13 H 1.48496 * 109.47107 * 90.00027 * 12 10 8 14 14 H 1.48504 * 109.46942 * 210.00250 * 12 10 8 15 15 H 1.48500 * 109.46739 * 329.99519 * 12 10 8 16 16 C 1.41230 * 119.89911 * 359.97438 * 7 6 5 17 17 C 1.35621 * 120.16226 * 359.97438 * 16 7 6 18 18 C 1.50694 * 119.56698 * 179.97438 * 17 16 7 19 19 O 1.42902 * 109.46875 * 0.02562 * 18 17 16 20 20 C 1.40359 * 111.96365 * 0.21336 * 5 4 3 21 21 S 1.75256 * 124.35037 * 49.40791 * 3 2 1 22 22 H 1.07995 * 122.68746 * 359.94067 * 4 3 2 23 23 H 1.08001 * 120.00996 * 359.96732 * 6 5 4 24 24 H 0.97000 * 119.99802 * 180.02562 * 11 10 8 25 25 H 1.07994 * 119.91999 * 180.02562 * 16 7 6 26 26 H 1.08998 * 109.47789 * 240.00323 * 18 17 16 27 27 H 1.09000 * 109.46874 * 119.99881 * 18 17 16 28 28 H 0.96699 * 114.00143 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3214 0.7180 0.8379 5 6 4.7511 0.5590 0.6522 6 6 5.8096 1.1625 1.3579 7 6 7.1335 0.8696 1.0165 8 6 8.1967 1.4737 1.7237 9 1 9.1587 0.9855 1.7731 10 6 8.0035 2.7041 2.3601 11 7 6.9844 3.4574 2.0323 12 14 9.1997 3.2724 3.6775 13 1 10.2959 4.0515 3.0479 14 1 8.4852 4.1274 4.6592 15 1 9.7686 2.0899 4.3727 16 6 7.4062 -0.0321 -0.0358 17 6 6.3872 -0.6146 -0.7153 18 6 6.6935 -1.5742 -1.8361 19 8 8.1095 -1.6993 -1.9824 20 6 5.0492 -0.3294 -0.3928 21 16 3.5573 -0.9404 -1.0987 22 1 2.8997 1.3651 1.5928 23 1 5.5990 1.8515 2.1624 24 1 6.8506 4.3109 2.4734 25 1 8.4286 -0.2589 -0.2995 26 1 6.2639 -1.1977 -2.7644 27 1 6.2647 -2.5496 -1.6066 28 1 8.3803 -2.3034 -2.6873 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229405.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:07 Heat of formation + Delta-G solvation = -5.865435 kcal Electronic energy + Delta-G solvation = -15744.599222 eV Core-core repulsion = 13043.806889 eV Total energy + Delta-G solvation = -2700.792333 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.16884 -38.26697 -37.56159 -36.37408 -34.91538 -32.07281 -30.74590 -27.51776 -26.66263 -25.12374 -22.77238 -21.35538 -19.79021 -18.87957 -18.00302 -17.40767 -16.96142 -16.12217 -15.86772 -15.67441 -15.29489 -15.18887 -14.69429 -14.25504 -14.18703 -13.83688 -13.65438 -13.20384 -13.07909 -12.76202 -12.61486 -12.31788 -11.97044 -11.75934 -11.63126 -11.28111 -11.20805 -10.79990 -9.98753 -9.26482 -8.64783 -8.44233 -6.29965 -0.42325 0.35767 0.77481 1.13420 1.27591 1.43150 1.49123 1.57199 1.78790 2.19410 2.23497 2.65742 2.75981 3.44111 3.59401 4.12700 4.24992 4.43550 4.55043 4.61764 4.62372 4.83568 5.01498 5.22628 5.32872 5.54435 5.67007 5.81934 6.03022 6.17894 6.25141 6.60777 6.88955 6.90661 7.06002 8.32286 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.018586 B = 0.007058 C = 0.005197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.143433 B = 3966.035316 C = 5386.172656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.308 3.692 3 C -0.138 4.138 4 C -0.030 4.030 5 C -0.072 4.072 6 C -0.158 4.158 7 C 0.076 3.924 8 C -0.488 4.488 9 H 0.079 0.921 10 C 0.039 3.961 11 N -0.818 5.818 12 Si 0.978 3.022 13 H -0.264 1.264 14 H -0.267 1.267 15 H -0.259 1.259 16 C -0.153 4.153 17 C -0.055 4.055 18 C 0.124 3.876 19 O -0.581 6.581 20 C -0.227 4.227 21 S 0.131 5.869 22 H 0.159 0.841 23 H 0.112 0.888 24 H 0.290 0.710 25 H 0.114 0.886 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -5.833 -3.927 7.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.118 5.118 2 C -0.007 4.007 3 C -0.255 4.255 4 C -0.067 4.067 5 C -0.078 4.078 6 C -0.181 4.181 7 C 0.072 3.928 8 C -0.517 4.517 9 H 0.097 0.903 10 C -0.177 4.177 11 N -0.444 5.444 12 Si 0.799 3.201 13 H -0.189 1.189 14 H -0.192 1.192 15 H -0.183 1.183 16 C -0.174 4.174 17 C -0.059 4.059 18 C 0.047 3.953 19 O -0.390 6.390 20 C -0.343 4.343 21 S 0.394 5.606 22 H 0.177 0.823 23 H 0.130 0.870 24 H 0.101 0.899 25 H 0.132 0.868 26 H 0.086 0.914 27 H 0.089 0.911 28 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -2.716 -6.210 -4.596 8.189 hybrid contribution 1.278 1.205 1.295 2.182 sum -1.438 -5.005 -3.301 6.165 Atomic orbital electron populations 1.81237 1.11615 1.09703 1.09232 1.24372 0.90879 0.92678 0.92806 1.19109 0.88218 1.10597 1.07607 1.21404 0.91110 0.96688 0.97509 1.19057 0.92280 0.98899 0.97518 1.21131 0.90846 1.03995 1.02095 1.17772 0.93225 0.91178 0.90608 1.19783 0.98514 1.04209 1.29188 0.90255 1.26671 0.97631 0.95682 0.97725 1.69869 1.28522 1.10192 1.35812 0.85249 0.78320 0.78792 0.77701 1.18881 1.19179 1.18282 1.20821 0.98313 1.01326 0.96938 1.18719 0.90008 0.98978 0.98220 1.20833 0.82016 0.96991 0.95460 1.86494 1.21764 1.70355 1.60372 1.22090 0.96208 1.09620 1.06346 1.83077 0.92629 1.48161 1.36770 0.82313 0.87008 0.89931 0.86788 0.91416 0.91060 0.75150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -14.61 18.54 19.00 0.35 -14.25 15 2 C 0.31 9.66 15.73 88.33 1.39 11.04 15 3 C -0.14 -4.42 6.15 22.46 0.14 -4.28 15 4 C -0.03 -1.04 10.25 22.96 0.24 -0.80 15 5 C -0.07 -3.05 6.02 -20.39 -0.12 -3.17 15 6 C -0.16 -7.69 8.75 23.28 0.20 -7.48 15 7 C 0.08 3.83 5.55 -21.42 -0.12 3.71 15 8 C -0.49 -24.75 9.03 23.41 0.21 -24.54 15 9 H 0.08 3.90 7.90 -2.91 -0.02 3.87 15 10 C 0.04 1.84 5.12 85.22 0.44 2.28 15 11 N -0.82 -40.27 10.99 21.81 0.24 -40.03 15 12 Si 0.98 36.19 29.59 68.60 2.03 38.22 15 13 H -0.26 -9.49 7.11 99.48 0.71 -8.78 15 14 H -0.27 -9.45 7.11 99.48 0.71 -8.74 15 15 H -0.26 -9.45 7.11 99.48 0.71 -8.75 15 16 C -0.15 -7.05 9.04 22.40 0.20 -6.85 15 17 C -0.05 -2.18 5.87 -19.91 -0.12 -2.30 15 18 C 0.12 3.70 7.09 71.23 0.51 4.21 15 19 O -0.58 -16.71 12.06 -148.98 -1.80 -18.50 15 20 C -0.23 -8.92 6.34 23.35 0.15 -8.77 15 21 S 0.13 4.06 22.83 -56.49 -1.29 2.77 15 22 H 0.16 4.91 8.06 -2.91 -0.02 4.88 15 23 H 0.11 5.68 6.17 -2.91 -0.02 5.66 15 24 H 0.29 12.90 8.30 -92.71 -0.77 12.14 15 25 H 0.11 5.22 6.90 -2.91 -0.02 5.20 15 26 H 0.07 1.78 8.14 -2.39 -0.02 1.76 15 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 15 28 H 0.40 6.43 9.12 -74.06 -0.68 5.76 15 Total: -1.00 -57.16 273.00 3.20 -53.96 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 0.55 Total: 14.80 kcal Atomic # 6 Polarization: -40.08 SS G_CDS: 3.11 Total: -36.96 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.59 Total: -54.28 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -1.80 Total: -18.50 kcal Atomic # 14 Polarization: 36.19 SS G_CDS: 2.03 Total: 38.22 kcal Atomic # 16 Polarization: 4.06 SS G_CDS: -1.29 Total: 2.77 kcal Total: -57.16 3.20 -53.96 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229405.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.091 kcal (2) G-P(sol) polarization free energy of solvation -57.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds