Wall clock time and date at job start Mon Mar 30 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40437 * 120.05052 * 165.02612 * 3 2 1 5 5 C 1.35449 * 120.49188 * 180.02562 * 4 3 2 6 6 C 1.42209 * 120.70281 * 359.65583 * 5 4 3 7 7 C 1.40560 * 118.81265 * 0.61405 * 6 5 4 8 8 C 1.39216 * 119.92467 * 359.43700 * 7 6 5 9 9 S 1.76018 * 109.95229 * 179.66326 * 7 6 5 10 10 C 1.75460 * 91.76215 * 359.74269 * 9 7 6 11 11 C 1.39789 * 124.83658 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00396 * 180.02562 * 11 10 9 13 13 C 1.40318 * 119.99922 * 0.02562 * 11 10 9 14 14 N 1.30672 * 119.99685 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99838 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47214 * 60.00260 * 15 13 11 17 17 H 1.48494 * 109.46917 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47163 * 300.00113 * 15 13 11 19 19 C 1.37130 * 110.32673 * 359.97438 * 10 9 7 20 20 C 1.50699 * 122.45767 * 180.02562 * 19 10 9 21 21 O 1.42903 * 109.47152 * 90.02914 * 20 19 10 22 22 H 1.08003 * 119.75232 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.64803 * 179.97438 * 5 4 3 24 24 H 1.08006 * 119.91144 * 180.28092 * 8 7 6 25 25 H 0.97003 * 119.99646 * 179.97438 * 14 13 11 26 26 H 1.08997 * 109.47198 * 330.02592 * 20 19 10 27 27 H 1.09008 * 109.47393 * 210.02309 * 20 19 10 28 28 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2707 1.1753 -0.3141 5 6 4.6251 1.1858 -0.3173 6 6 5.3611 0.0121 0.0037 7 6 4.6580 -1.1652 0.3124 8 6 3.2658 -1.1632 0.3113 9 16 5.7902 -2.4670 0.6613 10 6 7.1677 -1.4170 0.3809 11 6 8.5053 -1.8092 0.4870 12 1 9.2938 -1.0961 0.2969 13 6 8.8234 -3.1293 0.8405 14 7 7.8693 -3.9922 1.0700 15 14 10.6108 -3.6531 0.9829 16 1 11.2864 -2.8315 2.0192 17 1 10.6776 -5.0863 1.3657 18 1 11.2894 -3.4580 -0.3234 19 6 6.7453 -0.1570 0.0429 20 6 7.7059 0.9646 -0.2576 21 8 8.0093 0.9706 -1.6541 22 1 2.7270 2.0769 -0.5549 23 1 5.1517 2.0966 -0.5613 24 1 2.7258 -2.0668 0.5529 25 1 8.0893 -4.9049 1.3141 26 1 8.6232 0.8200 0.3129 27 1 7.2517 1.9161 0.0195 28 1 8.6241 1.6680 -1.9200 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229721.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:58 Heat of formation + Delta-G solvation = -11.122105 kcal Electronic energy + Delta-G solvation = -15845.276170 eV Core-core repulsion = 13144.255891 eV Total energy + Delta-G solvation = -2701.020280 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.67359 -36.62037 -35.58513 -34.91810 -33.28375 -30.23061 -29.54531 -27.00606 -25.00635 -22.76300 -21.50121 -19.00480 -18.44732 -17.59435 -16.58385 -15.86911 -15.43460 -14.58742 -14.36606 -13.52974 -13.36841 -13.27872 -13.19366 -12.66931 -12.49823 -12.27382 -12.06578 -11.88232 -11.70464 -11.41162 -11.14117 -10.82395 -10.54492 -10.45819 -9.86104 -9.49754 -9.26448 -9.16961 -8.67783 -7.61377 -7.46356 -6.60471 -4.96767 1.51041 2.26109 2.56701 2.70206 2.75315 2.98901 3.08472 3.33442 3.38467 3.61453 3.79372 4.45621 4.75713 4.77645 5.52329 5.61232 5.69145 6.04127 6.13351 6.23491 6.31957 6.40364 6.60419 6.77588 6.83159 6.98989 7.18786 7.29614 7.46084 7.61115 7.77383 8.01510 8.12584 8.18900 8.42295 9.34294 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.006516 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.134244 B = 4295.829998 C = 5205.396017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.481 5.481 2 C 0.284 3.716 3 C -0.139 4.139 4 C -0.057 4.057 5 C -0.155 4.155 6 C 0.063 3.937 7 C -0.278 4.278 8 C 0.014 3.986 9 S 0.148 5.852 10 C 0.070 3.930 11 C -0.352 4.352 12 H 0.105 0.895 13 C 0.050 3.950 14 N -0.756 5.756 15 Si 0.942 3.058 16 H -0.256 1.256 17 H -0.270 1.270 18 H -0.256 1.256 19 C -0.334 4.334 20 C 0.171 3.829 21 O -0.572 6.572 22 H 0.110 0.890 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.308 0.692 26 H 0.037 0.963 27 H 0.028 0.972 28 H 0.355 0.645 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.387 2.057 0.515 5.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.159 5.159 2 C -0.028 4.028 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.175 4.175 6 C 0.054 3.946 7 C -0.392 4.392 8 C -0.012 4.012 9 S 0.410 5.590 10 C -0.050 4.050 11 C -0.385 4.385 12 H 0.123 0.877 13 C -0.175 4.175 14 N -0.381 5.381 15 Si 0.764 3.236 16 H -0.180 1.180 17 H -0.194 1.194 18 H -0.180 1.180 19 C -0.340 4.340 20 C 0.093 3.907 21 O -0.376 6.376 22 H 0.128 0.872 23 H 0.128 0.872 24 H 0.129 0.871 25 H 0.121 0.879 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 2.980 -0.210 1.003 3.151 hybrid contribution 1.622 1.683 -0.334 2.361 sum 4.602 1.473 0.669 4.878 Atomic orbital electron populations 1.81120 1.12456 1.09105 1.13199 1.25937 0.92766 0.92367 0.91730 1.15393 0.83170 0.96504 1.19466 1.20117 0.93881 0.95487 0.98440 1.20367 0.92895 0.97292 1.06928 1.17919 0.92419 0.92074 0.92171 1.23422 0.97390 1.01935 1.16485 1.20128 0.91564 0.95370 0.94088 1.84926 0.92468 1.08055 1.73577 1.21365 0.96625 0.93883 0.93172 1.19523 0.92207 0.95304 1.31476 0.87675 1.26486 1.02370 0.96073 0.92533 1.68588 1.35343 1.06293 1.27895 0.85726 0.78694 0.78537 0.80640 1.18034 1.19426 1.17976 1.18017 0.91207 0.95979 1.28814 1.20141 0.95267 0.94720 0.80559 1.86758 1.67701 1.56649 1.26448 0.87220 0.87181 0.87103 0.87871 0.94475 0.95352 0.80084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -9.58 18.54 41.84 0.78 -8.80 15 2 C 0.28 5.37 15.32 -22.48 -0.34 5.03 15 3 C -0.14 -2.64 5.74 -106.78 -0.61 -3.25 15 4 C -0.06 -1.03 9.65 -39.75 -0.38 -1.42 15 5 C -0.15 -3.03 9.60 -39.05 -0.37 -3.40 15 6 C 0.06 1.39 5.84 -107.03 -0.63 0.77 15 7 C -0.28 -6.12 6.46 -38.34 -0.25 -6.37 15 8 C 0.01 0.27 9.77 -38.85 -0.38 -0.11 15 9 S 0.15 3.32 20.13 -107.50 -2.16 1.16 15 10 C 0.07 1.65 6.11 -39.40 -0.24 1.41 15 11 C -0.35 -7.79 8.83 -38.22 -0.34 -8.12 15 12 H 0.11 2.19 6.67 -52.49 -0.35 1.84 15 13 C 0.05 1.02 5.50 -17.26 -0.09 0.92 15 14 N -0.76 -15.88 10.58 55.57 0.59 -15.30 15 15 Si 0.94 15.14 29.56 -169.99 -5.03 10.11 15 16 H -0.26 -4.05 7.11 56.52 0.40 -3.65 15 17 H -0.27 -4.21 7.11 56.52 0.40 -3.81 15 18 H -0.26 -4.13 7.11 56.52 0.40 -3.73 15 19 C -0.33 -7.59 5.57 -104.56 -0.58 -8.17 15 20 C 0.17 3.32 6.74 36.01 0.24 3.56 15 21 O -0.57 -10.84 13.64 -35.23 -0.48 -11.32 15 22 H 0.11 1.70 8.06 -52.48 -0.42 1.27 15 23 H 0.11 1.95 7.36 -52.49 -0.39 1.56 15 24 H 0.11 2.00 8.06 -52.48 -0.42 1.57 15 25 H 0.31 5.74 8.29 -40.82 -0.34 5.40 15 26 H 0.04 0.68 6.89 -51.93 -0.36 0.32 15 27 H 0.03 0.50 7.30 -51.92 -0.38 0.12 15 28 H 0.35 4.62 9.12 45.56 0.42 5.04 15 LS Contribution 270.66 15.07 4.08 4.08 Total: -1.00 -26.05 270.66 -7.25 -33.30 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -1.04 Total: 5.93 kcal Atomic # 6 Polarization: -15.18 SS G_CDS: -3.98 Total: -19.16 kcal Atomic # 7 Polarization: -25.46 SS G_CDS: 1.36 Total: -24.10 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -0.48 Total: -11.32 kcal Atomic # 14 Polarization: 15.14 SS G_CDS: -5.03 Total: 10.11 kcal Atomic # 16 Polarization: 3.32 SS G_CDS: -2.16 Total: 1.16 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -26.05 -7.25 -33.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229721.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.177 kcal (2) G-P(sol) polarization free energy of solvation -26.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds