Wall clock time and date at job start Mon Mar 30 2020 06:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.40437 * 120.05052 * 165.02612 * 3 2 1 5 5 C 1.35449 * 120.49188 * 180.02562 * 4 3 2 6 6 C 1.42209 * 120.70281 * 359.65583 * 5 4 3 7 7 C 1.40560 * 118.81265 * 0.61405 * 6 5 4 8 8 C 1.39216 * 119.92467 * 359.43700 * 7 6 5 9 9 S 1.76018 * 109.95229 * 179.66326 * 7 6 5 10 10 C 1.75460 * 91.76215 * 359.74269 * 9 7 6 11 11 C 1.39789 * 124.83658 * 179.97438 * 10 9 7 12 12 H 1.07997 * 120.00396 * 180.02562 * 11 10 9 13 13 C 1.40318 * 119.99922 * 0.02562 * 11 10 9 14 14 N 1.30672 * 119.99685 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99838 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47214 * 60.00260 * 15 13 11 17 17 H 1.48494 * 109.46917 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47163 * 300.00113 * 15 13 11 19 19 C 1.37130 * 110.32673 * 359.97438 * 10 9 7 20 20 C 1.50699 * 122.45767 * 180.02562 * 19 10 9 21 21 O 1.42903 * 109.47152 * 90.02914 * 20 19 10 22 22 H 1.08003 * 119.75232 * 0.02562 * 4 3 2 23 23 H 1.07999 * 119.64803 * 179.97438 * 5 4 3 24 24 H 1.08006 * 119.91144 * 180.28092 * 8 7 6 25 25 H 0.97003 * 119.99646 * 179.97438 * 14 13 11 26 26 H 1.08997 * 109.47198 * 330.02592 * 20 19 10 27 27 H 1.09008 * 109.47393 * 210.02309 * 20 19 10 28 28 H 0.96700 * 114.00311 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2707 1.1753 -0.3141 5 6 4.6251 1.1858 -0.3173 6 6 5.3611 0.0121 0.0037 7 6 4.6580 -1.1652 0.3124 8 6 3.2658 -1.1632 0.3113 9 16 5.7902 -2.4670 0.6613 10 6 7.1677 -1.4170 0.3809 11 6 8.5053 -1.8092 0.4870 12 1 9.2938 -1.0961 0.2969 13 6 8.8234 -3.1293 0.8405 14 7 7.8693 -3.9922 1.0700 15 14 10.6108 -3.6531 0.9829 16 1 11.2864 -2.8315 2.0192 17 1 10.6776 -5.0863 1.3657 18 1 11.2894 -3.4580 -0.3234 19 6 6.7453 -0.1570 0.0429 20 6 7.7059 0.9646 -0.2576 21 8 8.0093 0.9706 -1.6541 22 1 2.7270 2.0769 -0.5549 23 1 5.1517 2.0966 -0.5613 24 1 2.7258 -2.0668 0.5529 25 1 8.0893 -4.9049 1.3141 26 1 8.6232 0.8200 0.3129 27 1 7.2517 1.9161 0.0195 28 1 8.6241 1.6680 -1.9200 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396229721.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:58 Heat of formation + Delta-G solvation = -25.850826 kcal Electronic energy + Delta-G solvation = -15845.914856 eV Core-core repulsion = 13144.255891 eV Total energy + Delta-G solvation = -2701.658965 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.23417 -38.15212 -37.11594 -36.46101 -34.84153 -31.77184 -31.14582 -28.56587 -26.55674 -24.33626 -23.05207 -20.57174 -20.01618 -19.20324 -18.02443 -17.34636 -17.03859 -16.12932 -15.82079 -15.03239 -14.92516 -14.80975 -14.66436 -14.18616 -14.02871 -13.81407 -13.60482 -13.40910 -13.11844 -12.92310 -12.66895 -12.25037 -11.97524 -11.92119 -11.40111 -11.03616 -10.90948 -10.61308 -10.25961 -9.24403 -8.99162 -8.27886 -6.60340 -0.07527 0.71804 1.12131 1.34075 1.38505 1.54002 1.67655 1.77244 1.90329 2.12442 2.24939 2.87327 3.19755 3.23063 4.06114 4.19299 4.27752 4.56008 4.66351 4.73135 4.78560 4.86973 5.08351 5.22352 5.28219 5.44274 5.62950 5.70687 5.88034 6.03496 6.19407 6.42372 6.50403 6.64350 7.24622 7.85025 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.028329 B = 0.006516 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.134244 B = 4295.829998 C = 5205.396017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.299 3.701 3 C -0.133 4.133 4 C -0.048 4.048 5 C -0.159 4.159 6 C 0.041 3.959 7 C -0.298 4.298 8 C 0.009 3.991 9 S 0.121 5.879 10 C 0.042 3.958 11 C -0.375 4.375 12 H 0.111 0.889 13 C 0.016 3.984 14 N -0.781 5.781 15 Si 1.010 2.990 16 H -0.250 1.250 17 H -0.261 1.261 18 H -0.256 1.256 19 C -0.362 4.362 20 C 0.176 3.824 21 O -0.592 6.592 22 H 0.144 0.856 23 H 0.130 0.870 24 H 0.123 0.877 25 H 0.317 0.683 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.862 2.898 0.336 6.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.013 4.013 3 C -0.139 4.139 4 C -0.070 4.070 5 C -0.178 4.178 6 C 0.032 3.968 7 C -0.413 4.413 8 C -0.016 4.016 9 S 0.383 5.617 10 C -0.078 4.078 11 C -0.408 4.408 12 H 0.129 0.871 13 C -0.206 4.206 14 N -0.406 5.406 15 Si 0.828 3.172 16 H -0.174 1.174 17 H -0.185 1.185 18 H -0.180 1.180 19 C -0.368 4.368 20 C 0.098 3.902 21 O -0.399 6.399 22 H 0.161 0.839 23 H 0.148 0.852 24 H 0.141 0.859 25 H 0.131 0.869 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 3.444 0.651 0.819 3.599 hybrid contribution 1.374 1.466 -0.308 2.033 sum 4.818 2.117 0.511 5.288 Atomic orbital electron populations 1.81147 1.12809 1.09598 1.13553 1.25755 0.92432 0.91874 0.91254 1.15469 0.83151 0.96574 1.18727 1.20449 0.93541 0.96274 0.96778 1.20595 0.93464 0.97142 1.06641 1.18268 0.92685 0.93102 0.92696 1.23562 0.98099 1.01857 1.17738 1.20303 0.91007 0.96401 0.93924 1.84762 0.93366 1.09186 1.74423 1.21730 0.97302 0.94533 0.94228 1.19844 0.92039 0.96567 1.32340 0.87079 1.27382 1.06341 0.95375 0.91459 1.68623 1.37183 1.06946 1.27805 0.84747 0.73401 0.78494 0.80531 1.17374 1.18480 1.17961 1.18488 0.92281 0.96719 1.29287 1.20079 0.94940 0.94390 0.80784 1.86672 1.68774 1.58312 1.26191 0.83863 0.85234 0.85872 0.86935 0.94102 0.93565 0.77143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -18.63 18.54 19.00 0.35 -18.28 15 2 C 0.30 10.66 15.32 88.33 1.35 12.01 15 3 C -0.13 -4.80 5.74 -21.26 -0.12 -4.92 15 4 C -0.05 -1.63 9.65 22.16 0.21 -1.42 15 5 C -0.16 -5.91 9.60 22.61 0.22 -5.69 15 6 C 0.04 1.80 5.84 -21.42 -0.13 1.68 15 7 C -0.30 -13.24 6.46 23.07 0.15 -13.09 15 8 C 0.01 0.34 9.77 22.74 0.22 0.56 15 9 S 0.12 5.61 20.13 -56.49 -1.14 4.48 15 10 C 0.04 2.03 6.11 22.38 0.14 2.17 15 11 C -0.37 -16.81 8.83 23.15 0.20 -16.61 15 12 H 0.11 4.66 6.67 -2.91 -0.02 4.64 15 13 C 0.02 0.66 5.50 85.37 0.47 1.13 15 14 N -0.78 -33.17 10.58 21.89 0.23 -32.94 15 15 Si 1.01 30.17 29.56 68.60 2.03 32.20 15 16 H -0.25 -7.17 7.11 99.48 0.71 -6.46 15 17 H -0.26 -7.33 7.11 99.48 0.71 -6.63 15 18 H -0.26 -7.58 7.11 99.48 0.71 -6.87 15 19 C -0.36 -16.52 5.57 -19.82 -0.11 -16.63 15 20 C 0.18 6.68 6.74 71.24 0.48 7.16 15 21 O -0.59 -21.77 13.64 -148.98 -2.03 -23.80 15 22 H 0.14 3.85 8.06 -2.91 -0.02 3.83 15 23 H 0.13 4.24 7.36 -2.91 -0.02 4.22 15 24 H 0.12 4.39 8.06 -2.91 -0.02 4.37 15 25 H 0.32 11.84 8.29 -92.71 -0.77 11.07 15 26 H 0.04 1.48 6.89 -2.39 -0.02 1.46 15 27 H 0.05 1.55 7.30 -2.38 -0.02 1.53 15 28 H 0.38 9.22 9.12 -74.06 -0.68 8.54 15 Total: -1.00 -55.36 270.66 3.09 -52.27 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: 0.56 Total: 19.71 kcal Atomic # 6 Polarization: -36.73 SS G_CDS: 3.09 Total: -33.65 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: 0.58 Total: -51.22 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -2.03 Total: -23.80 kcal Atomic # 14 Polarization: 30.17 SS G_CDS: 2.03 Total: 32.20 kcal Atomic # 16 Polarization: 5.61 SS G_CDS: -1.14 Total: 4.48 kcal Total: -55.36 3.09 -52.27 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229721.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.424 kcal (2) G-P(sol) polarization free energy of solvation -55.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds