Wall clock time and date at job start Mon Mar 30 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.35357 * 124.73526 * 217.15747 * 3 2 1 5 5 C 1.39780 * 115.42678 * 179.97438 * 4 3 2 6 6 C 1.42307 * 128.35486 * 179.97438 * 5 4 3 7 7 C 1.35030 * 120.88025 * 180.02562 * 6 5 4 8 8 C 1.41388 * 120.40018 * 359.63511 * 7 6 5 9 9 C 1.40863 * 120.18487 * 180.33150 * 8 7 6 10 10 H 1.07993 * 119.99686 * 205.89800 * 9 8 7 11 11 C 1.40022 * 119.99568 * 25.90712 * 9 8 7 12 12 N 1.30789 * 120.00449 * 15.25413 * 11 9 8 13 13 Si 1.86806 * 119.99569 * 195.25648 * 11 9 8 14 14 H 1.48505 * 109.46975 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.46763 * 119.99872 * 13 11 9 16 16 H 1.48498 * 109.47208 * 239.99994 * 13 11 9 17 17 C 1.40349 * 119.62826 * 0.64983 * 8 7 6 18 18 C 1.50700 * 119.98360 * 179.68399 * 17 8 7 19 19 O 1.42899 * 109.47368 * 269.72488 * 18 17 8 20 20 C 1.38966 * 120.02649 * 359.40614 * 17 8 7 21 21 S 1.75462 * 124.74280 * 37.14053 * 3 2 1 22 22 H 1.07994 * 122.28685 * 359.96140 * 4 3 2 23 23 H 1.08000 * 119.55768 * 0.03815 * 6 5 4 24 24 H 1.07995 * 119.80331 * 179.97438 * 7 6 5 25 25 H 0.96996 * 120.00135 * 180.02562 * 12 11 9 26 26 H 1.09001 * 109.47417 * 149.72521 * 18 17 8 27 27 H 1.09001 * 109.47239 * 29.72395 * 18 17 8 28 28 H 0.96700 * 114.00021 * 59.99502 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.3388 0.8875 0.6719 5 6 4.7183 0.7076 0.5358 6 6 5.7699 1.4721 1.1144 7 6 7.0628 1.1619 0.8790 8 6 7.3962 0.0619 0.0556 9 6 8.7465 -0.2619 -0.1813 10 1 9.0258 -0.7857 -1.0834 11 6 9.7263 0.0952 0.7531 12 7 9.3779 0.4523 1.9620 13 14 11.5312 0.0616 0.2727 14 1 11.6591 -0.3748 -1.1410 15 1 12.1096 1.4207 0.4260 16 1 12.2597 -0.8884 1.1513 17 6 6.3742 -0.7015 -0.5298 18 6 6.7205 -1.8713 -1.4145 19 8 6.8306 -1.4282 -2.7687 20 6 5.0432 -0.3826 -0.2893 21 16 3.5684 -1.1483 -0.8705 22 1 2.9169 1.6801 1.2719 23 1 5.5306 2.3115 1.7504 24 1 7.8470 1.7542 1.3267 25 1 10.0566 0.7001 2.6091 26 1 5.9376 -2.6262 -1.3418 27 1 7.6700 -2.3004 -1.0944 28 1 7.5098 -0.7542 -2.9080 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396229889.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:10 Heat of formation + Delta-G solvation = 1.433603 kcal Electronic energy + Delta-G solvation = -15943.443119 eV Core-core repulsion = 13242.967296 eV Total energy + Delta-G solvation = -2700.475823 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.041 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.77188 -36.63452 -35.82288 -35.01368 -33.08643 -30.61966 -29.34281 -26.34861 -25.03856 -23.03577 -21.43325 -19.90628 -18.36864 -17.43272 -16.22003 -16.06937 -15.23312 -14.72205 -14.39147 -13.91919 -13.69357 -13.45206 -13.26353 -12.70433 -12.50354 -12.36892 -12.17843 -11.80259 -11.54101 -11.39675 -11.02686 -11.02107 -10.49741 -10.36348 -10.11766 -9.72548 -9.52435 -9.11952 -8.71890 -7.62179 -7.42183 -6.92386 -4.89742 1.17001 2.03584 2.49491 2.56884 2.70738 2.78186 2.83265 2.98168 3.49195 3.50136 3.79284 4.17217 4.58366 5.01557 5.34853 5.63745 5.88092 6.04849 6.15545 6.22867 6.41295 6.47643 6.54452 6.58071 6.87234 6.96582 7.34844 7.36623 7.50330 7.63353 7.96412 7.98162 8.20385 8.32741 8.33753 9.52189 Molecular weight = 259.04amu Principal moments of inertia in cm(-1) A = 0.034055 B = 0.006099 C = 0.005302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.993688 B = 4589.906411 C = 5279.532532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.305 3.695 3 C -0.235 4.235 4 C 0.011 3.989 5 C -0.216 4.216 6 C -0.058 4.058 7 C -0.139 4.139 8 C 0.147 3.853 9 C -0.417 4.417 10 H 0.092 0.908 11 C 0.071 3.929 12 N -0.758 5.758 13 Si 0.919 3.081 14 H -0.254 1.254 15 H -0.266 1.266 16 H -0.269 1.269 17 C -0.248 4.248 18 C 0.139 3.861 19 O -0.575 6.575 20 C -0.023 4.023 21 S 0.082 5.918 22 H 0.129 0.871 23 H 0.101 0.899 24 H 0.129 0.871 25 H 0.293 0.707 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 0.595 -0.938 3.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.141 5.141 2 C -0.008 4.008 3 C -0.352 4.352 4 C -0.024 4.024 5 C -0.221 4.221 6 C -0.079 4.079 7 C -0.158 4.158 8 C 0.140 3.860 9 C -0.444 4.444 10 H 0.110 0.890 11 C -0.153 4.153 12 N -0.380 5.380 13 Si 0.742 3.258 14 H -0.177 1.177 15 H -0.191 1.191 16 H -0.193 1.193 17 C -0.258 4.258 18 C 0.062 3.938 19 O -0.381 6.381 20 C -0.139 4.139 21 S 0.345 5.655 22 H 0.147 0.853 23 H 0.120 0.880 24 H 0.147 0.853 25 H 0.104 0.896 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.859 -0.995 -1.690 2.141 hybrid contribution 1.908 1.642 1.167 2.774 sum 2.767 0.647 -0.523 2.889 Atomic orbital electron populations 1.81171 1.11557 1.09898 1.11449 1.24581 0.91227 0.92686 0.92307 1.19024 0.87896 1.09780 1.18533 1.20178 0.92106 0.95625 0.94480 1.17590 0.92000 1.02862 1.09600 1.20431 0.92108 0.97529 0.97804 1.21044 0.95076 0.98229 1.01423 1.17462 0.92033 0.88560 0.87934 1.19898 0.91049 1.28823 1.04653 0.88971 1.26189 1.03139 0.91996 0.93973 1.69762 1.37772 1.27276 1.03220 0.86041 0.79700 0.79404 0.80677 1.17711 1.19091 1.19344 1.19536 0.89648 1.03962 1.12653 1.20743 1.00029 0.93077 0.79949 1.86434 1.62020 1.61636 1.28002 1.22297 0.95858 0.97323 0.98469 1.83740 0.95185 1.33626 1.52946 0.85310 0.88049 0.85335 0.89585 0.91004 0.92685 0.78026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.99 18.54 41.84 0.78 -8.21 15 2 C 0.30 5.69 15.77 -22.47 -0.35 5.33 15 3 C -0.23 -4.36 6.23 -38.68 -0.24 -4.60 15 4 C 0.01 0.20 10.05 -40.03 -0.40 -0.21 15 5 C -0.22 -4.35 5.87 -106.90 -0.63 -4.98 15 6 C -0.06 -1.15 9.99 -39.16 -0.39 -1.54 15 7 C -0.14 -2.95 8.57 -39.52 -0.34 -3.28 15 8 C 0.15 3.18 5.56 -106.91 -0.59 2.58 15 9 C -0.42 -8.60 8.10 -37.92 -0.31 -8.91 15 10 H 0.09 1.77 6.72 -52.49 -0.35 1.42 15 11 C 0.07 1.40 5.18 -17.33 -0.09 1.31 15 12 N -0.76 -15.66 10.88 55.55 0.60 -15.06 15 13 Si 0.92 14.83 29.59 -169.99 -5.03 9.80 15 14 H -0.25 -4.07 7.11 56.52 0.40 -3.66 15 15 H -0.27 -4.28 7.11 56.52 0.40 -3.88 15 16 H -0.27 -4.37 7.11 56.52 0.40 -3.97 15 17 C -0.25 -5.20 5.56 -103.56 -0.58 -5.78 15 18 C 0.14 2.64 6.42 36.01 0.23 2.87 15 19 O -0.58 -10.61 13.67 -35.23 -0.48 -11.09 15 20 C -0.02 -0.48 6.29 -38.45 -0.24 -0.72 15 21 S 0.08 1.55 22.49 -107.50 -2.42 -0.87 15 22 H 0.13 1.99 8.06 -52.49 -0.42 1.57 15 23 H 0.10 1.74 8.06 -52.49 -0.42 1.31 15 24 H 0.13 2.75 6.14 -52.49 -0.32 2.42 15 25 H 0.29 5.41 8.29 -40.82 -0.34 5.07 15 26 H 0.07 1.33 7.57 -51.93 -0.39 0.94 15 27 H 0.05 1.01 6.73 -51.93 -0.35 0.66 15 28 H 0.37 5.89 8.97 45.56 0.41 6.29 15 LS Contribution 270.62 15.07 4.08 4.08 Total: -1.00 -23.69 270.62 -7.39 -31.08 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -0.99 Total: 8.17 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -3.93 Total: -17.91 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 1.38 Total: -23.27 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.48 Total: -11.09 kcal Atomic # 14 Polarization: 14.83 SS G_CDS: -5.03 Total: 9.80 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.42 Total: -0.87 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -23.69 -7.39 -31.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396229889.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.512 kcal (2) G-P(sol) polarization free energy of solvation -23.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds